Wall clock time and date at job start Mon Mar 30 2020 23:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48492 * 109.47106 * 239.99635 * 3 2 1 5 5 H 1.48506 * 109.46917 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46826 * 119.99411 * 3 2 1 7 7 C 1.38806 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99936 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46856 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.50135 * 305.05829 * 11 10 9 13 13 C 1.53043 * 109.49314 * 184.99877 * 11 10 9 14 14 C 1.53042 * 109.52382 * 178.65632 * 13 11 10 15 15 C 1.53164 * 109.32836 * 61.37767 * 14 13 11 16 16 N 1.46932 * 108.76550 * 305.35353 * 15 14 13 17 17 C 1.34774 * 120.62853 * 233.63333 * 16 15 14 18 18 O 1.21615 * 120.00057 * 171.68969 * 17 16 15 19 19 C 1.47102 * 120.00174 * 351.69260 * 17 16 15 20 20 C 1.32612 * 124.62096 * 171.44966 * 19 17 16 21 21 C 1.51114 * 110.75786 * 179.84343 * 20 19 17 22 22 C 1.54571 * 104.90275 * 343.80949 * 21 20 19 23 23 C 1.51114 * 124.62115 * 351.75745 * 19 17 16 24 24 C 1.46924 * 118.73727 * 53.60746 * 16 15 14 25 25 H 0.96998 * 119.99808 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00427 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46844 * 59.99626 * 10 9 7 28 28 H 1.08999 * 109.46906 * 299.99900 * 10 9 7 29 29 H 1.09004 * 109.46474 * 298.67106 * 13 11 10 30 30 H 1.09001 * 109.46229 * 58.64535 * 13 11 10 31 31 H 1.09009 * 109.49757 * 181.30859 * 14 13 11 32 32 H 1.08992 * 109.50274 * 301.40572 * 14 13 11 33 33 H 1.08998 * 109.58916 * 185.57001 * 15 14 13 34 34 H 1.08999 * 109.71211 * 65.20366 * 15 14 13 35 35 H 1.08002 * 124.62339 * 0.02562 * 20 19 17 36 36 H 1.09004 * 110.51723 * 224.85274 * 21 20 19 37 37 H 1.08997 * 110.24158 * 102.62445 * 21 20 19 38 38 H 1.09003 * 110.98303 * 266.70773 * 22 21 20 39 39 H 1.08997 * 111.01774 * 142.92660 * 22 21 20 40 40 H 1.09003 * 110.36002 * 315.43978 * 23 19 17 41 41 H 1.08996 * 110.36438 * 77.75588 * 23 19 17 42 42 H 1.09004 * 109.58027 * 186.60814 * 24 16 15 43 43 H 1.09001 * 109.70279 * 66.25228 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.3785 -4.7129 0.8407 13 6 1.8243 -6.1419 0.1256 14 6 0.8285 -7.3035 0.1587 15 6 0.0326 -7.3264 -1.1497 16 7 -0.5847 -6.0083 -1.3506 17 6 -1.9103 -5.8966 -1.5670 18 8 -2.4338 -4.7990 -1.5813 19 6 -2.7239 -7.1024 -1.7859 20 6 -4.0486 -7.1168 -1.8458 21 6 -4.5587 -8.5190 -2.0853 22 6 -3.3261 -9.3119 -2.5764 23 6 -2.1645 -8.4945 -1.9667 24 6 0.2705 -4.8142 -1.3105 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 2.6848 -3.7145 0.8905 28 1 2.6847 -3.7145 -0.8895 29 1 2.4915 -6.2597 -0.7283 30 1 2.4090 -6.1385 1.0455 31 1 1.3693 -8.2432 0.2716 32 1 0.1453 -7.1733 0.9980 33 1 -0.7443 -8.0887 -1.0916 34 1 0.7003 -7.5478 -1.9823 35 1 -4.6771 -6.2448 -1.7409 36 1 -5.3373 -8.5172 -2.8482 37 1 -4.9390 -8.9456 -1.1572 38 1 -3.2722 -9.3147 -3.6651 39 1 -3.3347 -10.3294 -2.1856 40 1 -1.3145 -8.4761 -2.6489 41 1 -1.8704 -8.9130 -1.0042 42 1 -0.3496 -3.9190 -1.3585 43 1 0.9595 -4.8272 -2.1550 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713226934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:04 Heat of formation + Delta-G solvation = 4.026211 kcal Electronic energy + Delta-G solvation = -22105.204877 eV Core-core repulsion = 18958.168309 eV Total energy + Delta-G solvation = -3147.036568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48220 -38.28757 -37.22650 -34.88742 -32.86962 -31.65676 -30.15919 -29.47650 -28.57090 -25.53951 -25.36260 -23.13273 -21.82631 -21.20608 -20.91838 -19.56529 -18.34767 -17.06886 -16.52540 -16.01721 -15.88500 -15.08491 -14.73977 -14.56630 -14.20958 -13.75477 -13.47799 -13.19649 -13.00171 -12.91462 -12.65959 -12.47106 -12.23330 -12.18819 -11.90140 -11.74905 -11.52307 -11.09396 -11.00540 -10.80910 -10.70892 -10.45426 -10.27190 -10.19334 -9.95414 -9.61227 -9.49501 -9.11060 -8.79854 -8.35111 -6.83405 -5.66043 -2.95985 1.35916 3.18010 3.39647 3.49898 3.53537 3.55474 4.22786 4.30185 4.61736 4.66289 4.70162 4.87311 4.96904 5.00537 5.15010 5.25864 5.29062 5.35833 5.41208 5.43352 5.51177 5.60239 5.66882 5.70543 5.74384 5.83423 5.89492 5.90803 6.01463 6.15097 6.19648 6.19986 6.27069 6.39291 6.46134 6.61871 6.77376 6.84264 6.94817 7.64022 7.76972 8.40517 8.51610 9.62329 10.20912 10.55344 11.56164 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.003968 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.660730 B = 7054.147662 C = 7974.763286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.106 4.106 12 H 0.073 0.927 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.067 3.933 16 N -0.605 5.605 17 C 0.559 3.441 18 O -0.531 6.531 19 C -0.190 4.190 20 C -0.079 4.079 21 C -0.106 4.106 22 C -0.127 4.127 23 C -0.093 4.093 24 C 0.120 3.880 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.139 0.861 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.309 -24.250 -3.689 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.126 4.126 12 H 0.091 0.909 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.055 4.055 16 N -0.337 5.337 17 C 0.348 3.652 18 O -0.409 6.409 19 C -0.193 4.193 20 C -0.098 4.098 21 C -0.143 4.143 22 C -0.165 4.165 23 C -0.129 4.129 24 C -0.002 4.002 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.446 -23.526 -3.708 24.228 hybrid contribution 0.345 1.049 0.082 1.108 sum -4.101 -22.477 -3.626 23.134 Atomic orbital electron populations 1.69673 1.05051 1.25712 1.57337 1.24761 0.95489 0.97650 1.03018 0.86279 0.78491 0.83706 0.77756 1.21314 1.21704 1.21342 1.19165 0.90931 0.84228 1.43087 0.91302 1.42419 1.05976 0.99928 1.89463 1.20632 0.92977 0.85232 0.97899 1.21673 0.97938 0.95061 0.97936 0.90853 1.21524 0.97478 0.93907 1.02139 1.21914 0.98577 0.98953 0.97750 1.22829 0.98983 0.86181 0.97503 1.47981 1.06905 1.07982 1.70862 1.18031 0.81681 0.88481 0.76978 1.90861 1.71388 1.27725 1.50922 1.21868 0.95489 0.94569 1.07409 1.24049 0.95104 0.98260 0.92434 1.21467 0.98566 0.92421 1.01870 1.22521 0.94170 0.98750 1.01036 1.21608 0.98705 0.91703 1.00901 1.21715 0.93293 0.88115 0.97062 0.93451 0.78043 0.96128 0.96330 0.91865 0.91651 0.91057 0.91648 0.86607 0.91800 0.84375 0.90274 0.89757 0.90790 0.90527 0.90089 0.89357 0.87925 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.60 13.06 55.49 0.72 -28.88 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -7.10 9.99 -15.06 -0.15 -7.25 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.59 5.38 -59.91 -0.32 -19.91 16 10 C 0.16 3.36 5.65 -4.04 -0.02 3.34 16 11 C -0.11 -1.84 2.37 -90.50 -0.21 -2.05 16 12 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.11 -1.45 5.17 -26.69 -0.14 -1.59 16 14 C -0.13 -1.40 6.08 -26.62 -0.16 -1.56 16 15 C 0.07 0.71 5.16 -3.72 -0.02 0.69 16 16 N -0.60 -9.17 2.97 -174.18 -0.52 -9.68 16 17 C 0.56 9.38 7.64 -12.67 -0.10 9.28 16 18 O -0.53 -11.53 16.22 5.26 0.09 -11.44 16 19 C -0.19 -2.32 5.93 -102.73 -0.61 -2.93 16 20 C -0.08 -0.86 10.44 -36.01 -0.38 -1.24 16 21 C -0.11 -0.77 6.80 -26.86 -0.18 -0.95 16 22 C -0.13 -0.81 7.16 -25.08 -0.18 -0.99 16 23 C -0.09 -0.75 4.38 -26.85 -0.12 -0.87 16 24 C 0.12 2.15 5.53 -3.71 -0.02 2.13 16 25 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 26 H 0.39 11.05 6.90 -40.82 -0.28 10.77 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.12 0.98 2.50 -68.86 -0.17 0.81 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.14 1.62 8.04 -52.49 -0.42 1.20 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.62 6.90 -51.93 -0.36 0.26 16 41 H 0.09 0.59 6.68 -51.93 -0.35 0.25 16 42 H 0.10 2.29 6.21 -51.93 -0.32 1.97 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -34.99 335.54 -9.33 -44.32 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.95 Total: 6.82 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.39 Total: -4.47 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.12 Total: -58.47 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.99 -9.33 -44.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713226934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.345 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds