Wall clock time and date at job start Mon Mar 30 2020 23:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48492 * 109.47106 * 239.99635 * 3 2 1 5 5 H 1.48506 * 109.46917 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46826 * 119.99411 * 3 2 1 7 7 C 1.38806 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99936 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46856 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.50135 * 305.05829 * 11 10 9 13 13 C 1.53043 * 109.49314 * 184.99877 * 11 10 9 14 14 C 1.53042 * 109.52382 * 178.65632 * 13 11 10 15 15 C 1.53164 * 109.32836 * 61.37767 * 14 13 11 16 16 N 1.46932 * 108.76550 * 305.35353 * 15 14 13 17 17 C 1.34774 * 120.62853 * 233.63333 * 16 15 14 18 18 O 1.21615 * 120.00057 * 171.68969 * 17 16 15 19 19 C 1.47102 * 120.00174 * 351.69260 * 17 16 15 20 20 C 1.32612 * 124.62096 * 171.44966 * 19 17 16 21 21 C 1.51114 * 110.75786 * 179.84343 * 20 19 17 22 22 C 1.54571 * 104.90275 * 343.80949 * 21 20 19 23 23 C 1.51114 * 124.62115 * 351.75745 * 19 17 16 24 24 C 1.46924 * 118.73727 * 53.60746 * 16 15 14 25 25 H 0.96998 * 119.99808 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00427 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46844 * 59.99626 * 10 9 7 28 28 H 1.08999 * 109.46906 * 299.99900 * 10 9 7 29 29 H 1.09004 * 109.46474 * 298.67106 * 13 11 10 30 30 H 1.09001 * 109.46229 * 58.64535 * 13 11 10 31 31 H 1.09009 * 109.49757 * 181.30859 * 14 13 11 32 32 H 1.08992 * 109.50274 * 301.40572 * 14 13 11 33 33 H 1.08998 * 109.58916 * 185.57001 * 15 14 13 34 34 H 1.08999 * 109.71211 * 65.20366 * 15 14 13 35 35 H 1.08002 * 124.62339 * 0.02562 * 20 19 17 36 36 H 1.09004 * 110.51723 * 224.85274 * 21 20 19 37 37 H 1.08997 * 110.24158 * 102.62445 * 21 20 19 38 38 H 1.09003 * 110.98303 * 266.70773 * 22 21 20 39 39 H 1.08997 * 111.01774 * 142.92660 * 22 21 20 40 40 H 1.09003 * 110.36002 * 315.43978 * 23 19 17 41 41 H 1.08996 * 110.36438 * 77.75588 * 23 19 17 42 42 H 1.09004 * 109.58027 * 186.60814 * 24 16 15 43 43 H 1.09001 * 109.70279 * 66.25228 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.3785 -4.7129 0.8407 13 6 1.8243 -6.1419 0.1256 14 6 0.8285 -7.3035 0.1587 15 6 0.0326 -7.3264 -1.1497 16 7 -0.5847 -6.0083 -1.3506 17 6 -1.9103 -5.8966 -1.5670 18 8 -2.4338 -4.7990 -1.5813 19 6 -2.7239 -7.1024 -1.7859 20 6 -4.0486 -7.1168 -1.8458 21 6 -4.5587 -8.5190 -2.0853 22 6 -3.3261 -9.3119 -2.5764 23 6 -2.1645 -8.4945 -1.9667 24 6 0.2705 -4.8142 -1.3105 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 2.6848 -3.7145 0.8905 28 1 2.6847 -3.7145 -0.8895 29 1 2.4915 -6.2597 -0.7283 30 1 2.4090 -6.1385 1.0455 31 1 1.3693 -8.2432 0.2716 32 1 0.1453 -7.1733 0.9980 33 1 -0.7443 -8.0887 -1.0916 34 1 0.7003 -7.5478 -1.9823 35 1 -4.6771 -6.2448 -1.7409 36 1 -5.3373 -8.5172 -2.8482 37 1 -4.9390 -8.9456 -1.1572 38 1 -3.2722 -9.3147 -3.6651 39 1 -3.3347 -10.3294 -2.1856 40 1 -1.3145 -8.4761 -2.6489 41 1 -1.8704 -8.9130 -1.0042 42 1 -0.3496 -3.9190 -1.3585 43 1 0.9595 -4.8272 -2.1550 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713226934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:03 Heat of formation + Delta-G solvation = -19.477587 kcal Electronic energy + Delta-G solvation = -22106.224078 eV Core-core repulsion = 18958.168309 eV Total energy + Delta-G solvation = -3148.055770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60982 -39.28362 -38.45679 -36.64753 -34.51363 -33.09308 -31.76516 -30.32926 -29.49602 -27.08962 -26.68360 -24.88540 -22.96973 -22.29632 -21.91808 -20.81951 -19.36572 -19.12896 -17.62621 -17.21283 -16.74202 -16.72254 -16.23849 -15.74693 -15.40631 -15.31991 -15.16641 -14.55135 -14.21040 -14.07736 -13.86572 -13.54565 -13.50310 -13.05400 -12.98851 -12.91712 -12.74935 -12.53534 -12.25790 -12.16799 -11.99333 -11.96331 -11.92584 -11.71364 -11.35645 -11.21566 -10.97137 -10.71769 -10.00361 -9.53482 -9.04551 -7.96468 -5.28018 0.36560 1.43024 1.48168 1.54458 2.00285 2.21810 2.53722 3.35862 3.42176 3.62646 3.66616 3.85755 3.90066 3.99889 4.11897 4.17638 4.23184 4.30055 4.34084 4.46719 4.61350 4.72101 4.76350 4.79094 4.81281 4.87921 4.89743 4.92990 5.00290 5.04881 5.11250 5.21161 5.23574 5.31661 5.35348 5.41535 5.44372 5.48710 5.51223 5.58805 6.23351 6.46110 7.14550 7.28436 8.04747 8.27468 9.26935 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.003968 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.660730 B = 7054.147662 C = 7974.763286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.081 4.081 3 Si 0.981 3.019 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.158 3.842 11 C -0.094 4.094 12 H 0.046 0.954 13 C -0.107 4.107 14 C -0.128 4.128 15 C 0.059 3.941 16 N -0.601 5.601 17 C 0.544 3.456 18 O -0.603 6.603 19 C -0.212 4.212 20 C -0.077 4.077 21 C -0.101 4.101 22 C -0.118 4.118 23 C -0.089 4.089 24 C 0.126 3.874 25 H 0.250 0.750 26 H 0.369 0.631 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.054 0.946 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.045 0.955 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 -28.074 -3.905 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.809 3.191 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.382 4.382 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.031 3.969 11 C -0.113 4.113 12 H 0.064 0.936 13 C -0.145 4.145 14 C -0.166 4.166 15 C -0.061 4.061 16 N -0.332 5.332 17 C 0.336 3.664 18 O -0.486 6.486 19 C -0.215 4.215 20 C -0.097 4.097 21 C -0.138 4.138 22 C -0.156 4.156 23 C -0.125 4.125 24 C 0.003 3.997 25 H 0.059 0.941 26 H 0.201 0.799 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.797 -27.437 -3.919 27.856 hybrid contribution -0.161 2.216 0.148 2.227 sum -2.957 -25.221 -3.770 25.672 Atomic orbital electron populations 1.69886 1.07016 1.26165 1.59359 1.25723 0.96369 1.01636 1.03546 0.85108 0.77068 0.78537 0.78413 1.20053 1.22274 1.19939 1.19674 0.91637 0.85322 1.41532 0.90134 1.42698 1.05500 1.01570 1.89470 1.20853 0.93584 0.84254 0.98166 1.21533 0.96954 0.96563 0.96296 0.93578 1.21527 0.97827 0.91748 1.03362 1.21935 0.97960 0.99646 0.97055 1.23313 1.00196 0.84025 0.98546 1.48103 1.06384 1.08901 1.69793 1.18958 0.82379 0.89227 0.75836 1.90816 1.72787 1.30738 1.54286 1.21909 0.95520 0.94885 1.09174 1.24384 0.94843 0.99998 0.90515 1.21548 0.99482 0.89564 1.03188 1.22542 0.92189 0.99541 1.01282 1.21666 0.99669 0.88754 1.02400 1.21382 0.92828 0.87725 0.97813 0.94103 0.79932 0.95434 0.95465 0.90255 0.90655 0.86683 0.92758 0.83837 0.89550 0.86736 0.88981 0.87930 0.90464 0.87641 0.89172 0.87208 0.93628 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.96 13.06 21.65 0.28 -64.67 16 2 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 3 Si 0.98 48.74 29.55 68.60 2.03 50.77 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 6 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.25 -14.95 9.99 84.03 0.84 -14.11 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.75 -41.92 5.38 -343.44 -1.85 -43.76 16 10 C 0.16 6.73 5.65 86.38 0.49 7.22 16 11 C -0.09 -3.31 2.37 -10.72 -0.03 -3.34 16 12 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 13 C -0.11 -2.49 5.17 30.62 0.16 -2.33 16 14 C -0.13 -2.23 6.08 30.66 0.19 -2.04 16 15 C 0.06 1.07 5.16 86.35 0.45 1.52 16 16 N -0.60 -18.53 2.97 -823.22 -2.45 -20.97 16 17 C 0.54 19.33 7.64 86.57 0.66 19.99 16 18 O -0.60 -29.01 16.22 -4.08 -0.07 -29.08 16 19 C -0.21 -5.10 5.93 -18.57 -0.11 -5.21 16 20 C -0.08 -1.69 10.44 24.66 0.26 -1.43 16 21 C -0.10 -1.17 6.80 30.51 0.21 -0.97 16 22 C -0.12 -1.00 7.16 31.67 0.23 -0.78 16 23 C -0.09 -1.11 4.38 30.52 0.13 -0.98 16 24 C 0.13 4.77 5.53 86.36 0.48 5.24 16 25 H 0.25 16.16 8.31 -92.71 -0.77 15.39 16 26 H 0.37 22.78 6.90 -92.71 -0.64 22.14 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.14 1.86 2.50 -18.29 -0.05 1.82 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.11 2.96 8.04 -2.91 -0.02 2.94 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.09 1.00 6.90 -2.39 -0.02 0.98 16 41 H 0.11 0.92 6.68 -2.39 -0.02 0.91 16 42 H 0.05 2.26 6.21 -2.38 -0.01 2.24 16 43 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -83.84 335.54 2.68 -81.16 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.32 Total: 28.28 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 4.41 Total: -1.72 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -4.01 Total: -129.41 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.07 Total: -29.08 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.77 kcal Total: -83.84 2.68 -81.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713226934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.680 kcal (2) G-P(sol) polarization free energy of solvation -83.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds