Wall clock time and date at job start Tue Mar 31 2020 00:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99938 * 2 1 4 4 H 1.48494 * 109.47428 * 89.99511 * 3 2 1 5 5 H 1.48506 * 109.46890 * 209.99697 * 3 2 1 6 6 H 1.48499 * 109.47242 * 329.99512 * 3 2 1 7 7 C 1.38812 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99939 * 12.63864 * 7 2 1 9 9 N 1.36938 * 119.99489 * 192.62910 * 7 2 1 10 10 C 1.47067 * 136.06136 * 8.36483 * 9 7 2 11 11 C 1.53749 * 87.88927 * 152.95764 * 10 9 7 12 12 C 1.53009 * 114.57471 * 272.66292 * 11 10 9 13 13 N 1.46497 * 109.46772 * 268.67023 * 12 11 10 14 14 C 1.34781 * 119.99527 * 179.97438 * 13 12 11 15 15 O 1.21618 * 120.00196 * 0.02562 * 14 13 12 16 16 C 1.47104 * 120.00074 * 180.02562 * 14 13 12 17 17 C 1.32990 * 120.00197 * 187.20855 * 16 14 13 18 18 C 1.51270 * 120.84992 * 15.90209 * 17 16 14 19 19 C 1.53659 * 108.31017 * 128.61795 * 18 17 16 20 20 C 1.52954 * 109.32389 * 54.86317 * 19 18 17 21 21 C 1.52963 * 109.81665 * 296.26994 * 20 19 18 22 22 C 1.51264 * 120.85078 * 196.18104 * 17 16 14 23 23 C 1.47068 * 136.05294 * 188.72746 * 9 7 2 24 24 H 0.97001 * 120.00149 * 174.90867 * 1 2 3 25 25 H 1.08994 * 113.46713 * 267.69378 * 10 9 7 26 26 H 1.09002 * 113.46477 * 38.12960 * 10 9 7 27 27 H 1.09003 * 114.08980 * 139.78128 * 11 10 9 28 28 H 1.08997 * 109.46863 * 28.67247 * 12 11 10 29 29 H 1.08999 * 109.46890 * 148.67253 * 12 11 10 30 30 H 0.96989 * 120.00398 * 0.02562 * 13 12 11 31 31 H 1.07998 * 119.99588 * 7.20840 * 16 14 13 32 32 H 1.08999 * 109.62694 * 248.39051 * 18 17 16 33 33 H 1.09002 * 109.62504 * 8.95532 * 18 17 16 34 34 H 1.08999 * 109.63037 * 294.83856 * 19 18 17 35 35 H 1.09003 * 109.42324 * 174.76049 * 19 18 17 36 36 H 1.08999 * 109.41285 * 176.16664 * 20 19 18 37 37 H 1.08997 * 109.41605 * 56.37620 * 20 19 18 38 38 H 1.08994 * 109.48047 * 303.61839 * 21 20 19 39 39 H 1.08996 * 109.48056 * 183.57996 * 21 20 19 40 40 H 1.09000 * 109.63043 * 351.04204 * 22 17 16 41 41 H 1.09006 * 109.62621 * 111.60790 * 22 17 16 42 42 H 1.08999 * 113.46992 * 321.86414 * 23 9 7 43 43 H 1.08999 * 113.46844 * 92.25197 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4898 -2.1262 -0.2037 9 7 3.3547 -1.2164 0.2598 10 6 4.3558 -0.2400 0.7152 11 6 5.1572 -1.4171 1.2948 12 6 4.7657 -1.8130 2.7200 13 7 5.5977 -1.0789 3.6766 14 6 5.4289 -1.2679 5.0003 15 8 4.5863 -2.0482 5.4007 16 6 6.2639 -0.5304 5.9610 17 6 6.1991 -0.8195 7.2575 18 6 5.5668 -2.1083 7.7342 19 6 6.5525 -2.8074 8.6833 20 6 6.9433 -1.8449 9.8059 21 6 7.6880 -0.6429 9.2226 22 6 6.7503 0.1350 8.2935 23 6 4.4343 -2.2133 0.1994 24 1 -0.4850 -0.8367 -0.0745 25 1 4.8654 0.2719 -0.1011 26 1 3.9792 0.4461 1.4739 27 1 6.2346 -1.3356 1.1509 28 1 3.7168 -1.5701 2.8893 29 1 4.9169 -2.8841 2.8540 30 1 6.2694 -0.4563 3.3573 31 1 6.9295 0.2458 5.6134 32 1 4.6394 -1.8875 8.2627 33 1 5.3599 -2.7526 6.8797 34 1 7.4445 -3.1037 8.1314 35 1 6.0791 -3.6914 9.1106 36 1 7.5886 -2.3606 10.5171 37 1 6.0444 -1.5008 10.3174 38 1 8.5532 -0.9904 8.6580 39 1 8.0193 0.0073 10.0322 40 1 7.3042 0.9327 7.7986 41 1 5.9305 0.5598 8.8728 42 1 4.1247 -3.2084 0.5188 43 1 4.9640 -2.2223 -0.7532 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713892968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:06 Heat of formation + Delta-G solvation = 24.707406 kcal Electronic energy + Delta-G solvation = -21493.712030 eV Core-core repulsion = 18347.572266 eV Total energy + Delta-G solvation = -3146.139765 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.95095 -38.79390 -37.88517 -34.37103 -32.83377 -32.34269 -31.16912 -29.17607 -27.28155 -25.46592 -25.28344 -23.14634 -22.09783 -21.50614 -20.43983 -19.35024 -18.37927 -17.38854 -16.72032 -16.13971 -15.44641 -15.27925 -14.89278 -14.53982 -14.44073 -14.16037 -13.72232 -13.58896 -13.34142 -13.19399 -12.84088 -12.56093 -12.48862 -12.08454 -11.71923 -11.55329 -11.33305 -11.10875 -11.03514 -10.83046 -10.75595 -10.51728 -10.39807 -10.06640 -9.42973 -9.40870 -9.12206 -9.01212 -8.72318 -8.66351 -7.14729 -6.26257 -3.19530 1.31782 3.38030 3.42433 3.45508 3.48457 3.63490 4.47566 4.49275 4.62305 4.66106 4.78318 4.81466 4.93552 5.00411 5.11026 5.17918 5.19679 5.27548 5.35758 5.40846 5.48807 5.63192 5.70500 5.76749 5.78024 5.81097 5.87337 5.96095 6.07220 6.15027 6.18487 6.25486 6.33615 6.39984 6.41812 6.44151 6.59372 6.71234 6.90993 7.16633 7.74773 8.27885 8.45927 9.01360 9.54435 10.40708 11.23685 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.003440 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.642757 B = 8137.631872 C = 8331.257536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.025 4.025 3 Si 1.063 2.937 4 H -0.294 1.294 5 H -0.280 1.280 6 H -0.296 1.296 7 C -0.303 4.303 8 H 0.082 0.918 9 N -0.624 5.624 10 C 0.105 3.895 11 C -0.146 4.146 12 C 0.147 3.853 13 N -0.723 5.723 14 C 0.543 3.457 15 O -0.541 6.541 16 C -0.230 4.230 17 C -0.024 4.024 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.093 4.093 23 C 0.127 3.873 24 H 0.261 0.739 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.703 -1.079 16.538 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.224 4.224 3 Si 0.895 3.105 4 H -0.222 1.222 5 H -0.207 1.207 6 H -0.224 1.224 7 C -0.430 4.430 8 H 0.099 0.901 9 N -0.353 5.353 10 C -0.020 4.020 11 C -0.166 4.166 12 C 0.024 3.976 13 N -0.373 5.373 14 C 0.333 3.667 15 O -0.421 6.421 16 C -0.251 4.251 17 C -0.026 4.026 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.130 4.130 23 C 0.000 4.000 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.232 0.768 31 H 0.143 0.857 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.617 -0.015 16.790 25.070 hybrid contribution 0.549 -1.169 -0.531 1.397 sum 19.167 -1.184 16.260 25.162 Atomic orbital electron populations 1.70889 1.05422 1.29507 1.51845 1.25779 0.96542 1.00909 0.99170 0.83789 0.74520 0.75829 0.76388 1.22198 1.20690 1.22384 1.20153 0.79599 0.95727 1.47490 0.90080 1.46240 1.02437 1.07824 1.78762 1.22788 0.89791 0.93243 0.96218 1.23181 0.98338 1.00653 0.94450 1.21029 0.95773 0.95350 0.85470 1.45983 1.39616 1.45734 1.05919 1.18523 0.83866 0.81907 0.82420 1.90685 1.35820 1.37272 1.78338 1.22345 1.04260 1.04957 0.93525 1.22665 0.91879 0.94505 0.93553 1.21503 0.97509 0.94483 1.01467 1.21679 0.99317 0.98060 0.96394 1.21566 1.00336 0.96326 0.97886 1.21574 0.98165 0.97048 0.98650 1.20973 0.99543 0.96426 0.96058 1.22331 0.88757 0.94509 0.94401 0.92874 0.93548 0.93107 0.90390 0.89950 0.91696 0.76844 0.85689 0.90577 0.86904 0.92079 0.91580 0.92052 0.91821 0.91767 0.91655 0.90804 0.89698 0.93466 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.17 13.70 55.49 0.76 -29.41 16 2 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 3 Si 1.06 27.00 25.50 -169.99 -4.34 22.67 16 4 H -0.29 -7.24 7.01 56.52 0.40 -6.85 16 5 H -0.28 -6.50 5.45 56.52 0.31 -6.19 16 6 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 7 C -0.30 -8.89 11.05 -15.06 -0.17 -9.06 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 9 N -0.62 -15.37 3.47 -184.60 -0.64 -16.01 16 10 C 0.11 2.17 5.10 -8.37 -0.04 2.13 16 11 C -0.15 -2.41 4.17 -89.97 -0.37 -2.78 16 12 C 0.15 2.49 5.52 -4.04 -0.02 2.47 16 13 N -0.72 -10.21 5.55 -61.49 -0.34 -10.56 16 14 C 0.54 8.25 7.57 -12.66 -0.10 8.16 16 15 O -0.54 -10.12 13.40 5.26 0.07 -10.05 16 16 C -0.23 -2.67 9.64 -37.81 -0.36 -3.03 16 17 C -0.02 -0.26 5.36 -100.61 -0.54 -0.80 16 18 C -0.11 -1.32 5.22 -27.26 -0.14 -1.46 16 19 C -0.12 -1.05 5.95 -26.41 -0.16 -1.21 16 20 C -0.12 -0.91 5.81 -26.77 -0.16 -1.07 16 21 C -0.12 -0.81 5.94 -26.64 -0.16 -0.97 16 22 C -0.09 -0.74 6.04 -27.49 -0.17 -0.91 16 23 C 0.13 2.45 8.25 -8.50 -0.07 2.38 16 24 H 0.26 8.33 8.73 -40.82 -0.36 7.98 16 25 H 0.05 0.93 6.95 -51.93 -0.36 0.57 16 26 H 0.05 1.10 6.16 -51.93 -0.32 0.78 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 1.76 7.93 -51.93 -0.41 1.34 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.40 4.37 8.46 -40.82 -0.35 4.02 16 31 H 0.13 1.10 7.98 -52.49 -0.42 0.69 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.11 1.63 5.09 -51.93 -0.26 1.37 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.51 7.94 -51.93 -0.41 0.10 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -34.39 337.26 -9.23 -43.62 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.28 Total: 1.66 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.55 Total: -7.00 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.22 Total: -55.98 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 27.00 SS G_CDS: -4.34 Total: 22.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.39 -9.23 -43.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713892968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.326 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds