Wall clock time and date at job start Tue Mar 31 2020 00:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99938 * 2 1 4 4 H 1.48494 * 109.47428 * 89.99511 * 3 2 1 5 5 H 1.48506 * 109.46890 * 209.99697 * 3 2 1 6 6 H 1.48499 * 109.47242 * 329.99512 * 3 2 1 7 7 C 1.38812 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99939 * 12.63864 * 7 2 1 9 9 N 1.36938 * 119.99489 * 192.62910 * 7 2 1 10 10 C 1.47067 * 136.06136 * 8.36483 * 9 7 2 11 11 C 1.53749 * 87.88927 * 152.95764 * 10 9 7 12 12 C 1.53009 * 114.57471 * 272.66292 * 11 10 9 13 13 N 1.46497 * 109.46772 * 268.67023 * 12 11 10 14 14 C 1.34781 * 119.99527 * 179.97438 * 13 12 11 15 15 O 1.21618 * 120.00196 * 0.02562 * 14 13 12 16 16 C 1.47104 * 120.00074 * 180.02562 * 14 13 12 17 17 C 1.32990 * 120.00197 * 187.20855 * 16 14 13 18 18 C 1.51270 * 120.84992 * 15.90209 * 17 16 14 19 19 C 1.53659 * 108.31017 * 128.61795 * 18 17 16 20 20 C 1.52954 * 109.32389 * 54.86317 * 19 18 17 21 21 C 1.52963 * 109.81665 * 296.26994 * 20 19 18 22 22 C 1.51264 * 120.85078 * 196.18104 * 17 16 14 23 23 C 1.47068 * 136.05294 * 188.72746 * 9 7 2 24 24 H 0.97001 * 120.00149 * 174.90867 * 1 2 3 25 25 H 1.08994 * 113.46713 * 267.69378 * 10 9 7 26 26 H 1.09002 * 113.46477 * 38.12960 * 10 9 7 27 27 H 1.09003 * 114.08980 * 139.78128 * 11 10 9 28 28 H 1.08997 * 109.46863 * 28.67247 * 12 11 10 29 29 H 1.08999 * 109.46890 * 148.67253 * 12 11 10 30 30 H 0.96989 * 120.00398 * 0.02562 * 13 12 11 31 31 H 1.07998 * 119.99588 * 7.20840 * 16 14 13 32 32 H 1.08999 * 109.62694 * 248.39051 * 18 17 16 33 33 H 1.09002 * 109.62504 * 8.95532 * 18 17 16 34 34 H 1.08999 * 109.63037 * 294.83856 * 19 18 17 35 35 H 1.09003 * 109.42324 * 174.76049 * 19 18 17 36 36 H 1.08999 * 109.41285 * 176.16664 * 20 19 18 37 37 H 1.08997 * 109.41605 * 56.37620 * 20 19 18 38 38 H 1.08994 * 109.48047 * 303.61839 * 21 20 19 39 39 H 1.08996 * 109.48056 * 183.57996 * 21 20 19 40 40 H 1.09000 * 109.63043 * 351.04204 * 22 17 16 41 41 H 1.09006 * 109.62621 * 111.60790 * 22 17 16 42 42 H 1.08999 * 113.46992 * 321.86414 * 23 9 7 43 43 H 1.08999 * 113.46844 * 92.25197 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4898 -2.1262 -0.2037 9 7 3.3547 -1.2164 0.2598 10 6 4.3558 -0.2400 0.7152 11 6 5.1572 -1.4171 1.2948 12 6 4.7657 -1.8130 2.7200 13 7 5.5977 -1.0789 3.6766 14 6 5.4289 -1.2679 5.0003 15 8 4.5863 -2.0482 5.4007 16 6 6.2639 -0.5304 5.9610 17 6 6.1991 -0.8195 7.2575 18 6 5.5668 -2.1083 7.7342 19 6 6.5525 -2.8074 8.6833 20 6 6.9433 -1.8449 9.8059 21 6 7.6880 -0.6429 9.2226 22 6 6.7503 0.1350 8.2935 23 6 4.4343 -2.2133 0.1994 24 1 -0.4850 -0.8367 -0.0745 25 1 4.8654 0.2719 -0.1011 26 1 3.9792 0.4461 1.4739 27 1 6.2346 -1.3356 1.1509 28 1 3.7168 -1.5701 2.8893 29 1 4.9169 -2.8841 2.8540 30 1 6.2694 -0.4563 3.3573 31 1 6.9295 0.2458 5.6134 32 1 4.6394 -1.8875 8.2627 33 1 5.3599 -2.7526 6.8797 34 1 7.4445 -3.1037 8.1314 35 1 6.0791 -3.6914 9.1106 36 1 7.5886 -2.3606 10.5171 37 1 6.0444 -1.5008 10.3174 38 1 8.5532 -0.9904 8.6580 39 1 8.0193 0.0073 10.0322 40 1 7.3042 0.9327 7.7986 41 1 5.9305 0.5598 8.8728 42 1 4.1247 -3.2084 0.5188 43 1 4.9640 -2.2223 -0.7532 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713892968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:06 Heat of formation + Delta-G solvation = 0.713383 kcal Electronic energy + Delta-G solvation = -21494.752489 eV Core-core repulsion = 18347.572266 eV Total energy + Delta-G solvation = -3147.180223 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.14093 -40.23292 -38.81202 -35.74877 -34.51730 -33.63611 -31.87163 -30.84849 -28.56404 -26.92821 -26.75988 -23.93029 -23.72444 -22.56159 -21.46532 -20.79569 -19.65115 -19.20907 -17.83695 -17.33171 -17.01021 -16.43737 -16.18795 -15.82252 -15.57171 -15.24068 -15.17717 -15.06840 -14.45379 -14.38456 -13.99652 -13.54461 -13.48138 -13.34629 -13.03480 -12.89097 -12.78542 -12.55965 -12.03198 -11.99138 -11.87215 -11.76263 -11.59790 -11.36768 -11.17705 -11.02230 -10.88165 -10.53731 -10.05558 -9.77058 -9.22285 -8.62651 -5.46810 0.38640 1.37182 1.50040 1.64927 2.23792 2.34546 2.55293 3.07990 3.16305 3.47370 3.74381 3.79800 3.86266 4.05336 4.07172 4.21287 4.34405 4.42947 4.47154 4.48356 4.51000 4.64744 4.68804 4.71764 4.75164 4.80558 4.85015 4.96218 5.01425 5.04622 5.14523 5.19073 5.20200 5.24091 5.30101 5.39577 5.45073 5.54527 5.61689 5.73270 5.95600 6.67217 6.70176 7.34253 7.34734 8.29178 8.89028 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.003440 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.642757 B = 8137.631872 C = 8331.257536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.092 4.092 3 Si 1.105 2.895 4 H -0.285 1.285 5 H -0.239 1.239 6 H -0.305 1.305 7 C -0.289 4.289 8 H 0.043 0.957 9 N -0.662 5.662 10 C 0.097 3.903 11 C -0.110 4.110 12 C 0.155 3.845 13 N -0.710 5.710 14 C 0.533 3.467 15 O -0.588 6.588 16 C -0.240 4.240 17 C -0.019 4.019 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.091 4.091 23 C 0.121 3.879 24 H 0.244 0.756 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.136 0.864 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.418 0.582 31 H 0.161 0.839 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.041 0.959 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.362 0.572 17.544 30.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.283 4.283 3 Si 0.930 3.070 4 H -0.212 1.212 5 H -0.163 1.163 6 H -0.233 1.233 7 C -0.417 4.417 8 H 0.061 0.939 9 N -0.391 5.391 10 C -0.027 4.027 11 C -0.129 4.129 12 C 0.030 3.970 13 N -0.362 5.362 14 C 0.325 3.675 15 O -0.471 6.471 16 C -0.260 4.260 17 C -0.021 4.021 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.151 4.151 22 C -0.128 4.128 23 C -0.004 4.004 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.154 0.846 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.255 0.745 31 H 0.178 0.822 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.060 0.940 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.369 1.617 17.789 29.414 hybrid contribution -0.905 -1.883 -0.778 2.230 sum 22.465 -0.266 17.011 28.180 Atomic orbital electron populations 1.71010 1.06932 1.28519 1.55568 1.27230 0.96541 1.04882 0.99614 0.83340 0.75027 0.71463 0.77218 1.21162 1.16269 1.23300 1.19983 0.82620 0.94172 1.44892 0.93899 1.46318 1.02056 1.11380 1.79345 1.23074 0.89048 0.93874 0.96698 1.22947 1.00792 0.96823 0.92359 1.20712 0.93521 0.95787 0.86944 1.45797 1.39404 1.45714 1.05257 1.19255 0.83753 0.81416 0.83090 1.90687 1.37975 1.39367 1.79098 1.22417 1.04992 1.05779 0.92828 1.22986 0.90656 0.94161 0.94261 1.21431 0.98101 0.95157 1.00814 1.21650 0.98514 0.98377 0.96496 1.21573 1.00742 0.96364 0.97338 1.21583 0.97743 0.96818 0.98984 1.21056 1.00040 0.96196 0.95467 1.22627 0.87392 0.93662 0.96721 0.94723 0.91072 0.94299 0.84597 0.95226 0.91706 0.74507 0.82156 0.91714 0.90148 0.91954 0.91596 0.90593 0.91934 0.91436 0.89700 0.88834 0.89299 0.94024 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.86 13.70 21.65 0.30 -65.56 16 2 C -0.09 -5.70 5.50 84.86 0.47 -5.23 16 3 Si 1.10 54.24 25.50 68.60 1.75 55.99 16 4 H -0.28 -13.38 7.01 99.48 0.70 -12.68 16 5 H -0.24 -9.96 5.45 99.48 0.54 -9.42 16 6 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 7 C -0.29 -17.46 11.05 84.03 0.93 -16.53 16 8 H 0.04 2.83 8.06 -2.91 -0.02 2.80 16 9 N -0.66 -32.07 3.47 -737.94 -2.56 -34.63 16 10 C 0.10 3.69 5.10 83.27 0.42 4.11 16 11 C -0.11 -3.21 4.17 -10.37 -0.04 -3.25 16 12 C 0.15 5.09 5.52 86.38 0.48 5.57 16 13 N -0.71 -18.61 5.55 -466.70 -2.59 -21.20 16 14 C 0.53 15.85 7.57 86.57 0.65 16.51 16 15 O -0.59 -22.86 13.40 -4.09 -0.05 -22.92 16 16 C -0.24 -5.02 9.64 23.43 0.23 -4.80 16 17 C -0.02 -0.37 5.36 -17.26 -0.09 -0.46 16 18 C -0.12 -2.78 5.22 30.25 0.16 -2.62 16 19 C -0.11 -1.93 5.95 30.80 0.18 -1.75 16 20 C -0.12 -1.52 5.81 30.57 0.18 -1.35 16 21 C -0.11 -1.18 5.94 30.66 0.18 -0.99 16 22 C -0.09 -1.15 6.04 30.10 0.18 -0.97 16 23 C 0.12 4.40 8.25 83.18 0.69 5.09 16 24 H 0.24 16.61 8.73 -92.71 -0.81 15.80 16 25 H 0.07 2.43 6.95 -2.39 -0.02 2.41 16 26 H 0.04 1.58 6.16 -2.39 -0.01 1.57 16 27 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.03 1.29 7.93 -2.39 -0.02 1.28 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.42 7.48 8.46 -92.72 -0.78 6.69 16 31 H 0.16 2.15 7.98 -2.91 -0.02 2.12 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 2.46 5.09 -2.48 -0.01 2.45 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.87 7.94 -2.39 -0.02 0.85 16 41 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -81.22 337.26 1.45 -79.77 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -0.01 Total: 15.21 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 4.61 Total: -6.67 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -4.85 Total: -121.39 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 54.24 SS G_CDS: 1.75 Total: 55.99 kcal Total: -81.22 1.45 -79.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713892968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.487 kcal (2) G-P(sol) polarization free energy of solvation -81.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds