Wall clock time and date at job start Mon Mar 30 2020 23:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47207 * 180.27472 * 3 2 1 5 5 H 1.48495 * 109.47300 * 300.27886 * 3 2 1 6 6 H 1.48502 * 109.47010 * 60.27608 * 3 2 1 7 7 C 1.38815 * 120.00099 * 180.28163 * 2 1 3 8 8 H 1.07998 * 120.00366 * 179.72801 * 7 2 1 9 9 N 1.36935 * 119.99545 * 359.72021 * 7 2 1 10 10 C 1.46505 * 119.99726 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47013 * 174.90351 * 10 9 7 12 12 N 1.46508 * 110.01487 * 55.11959 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.16414 * 12 11 10 14 14 O 1.21278 * 120.00239 * 354.90004 * 13 12 11 15 15 C 1.50700 * 119.99626 * 174.90218 * 13 12 11 16 16 C 1.54626 * 111.04098 * 295.33170 * 15 13 12 17 17 C 1.51164 * 104.69943 * 217.36264 * 16 15 13 18 18 C 1.30526 * 111.11596 * 16.37856 * 17 16 15 19 19 C 1.51105 * 111.10783 * 0.03726 * 18 17 16 20 20 C 1.54263 * 110.03508 * 293.68066 * 11 10 9 21 21 C 1.54891 * 104.19537 * 217.10527 * 20 11 10 22 22 C 1.54898 * 102.74869 * 37.93932 * 21 20 11 23 23 C 1.53874 * 110.03309 * 176.50821 * 11 10 9 24 24 H 0.97001 * 119.99890 * 359.72351 * 1 2 3 25 25 H 0.97001 * 120.00428 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47436 * 294.90719 * 10 9 7 27 27 H 1.09003 * 109.46735 * 54.91102 * 10 9 7 28 28 H 0.96993 * 120.00090 * 245.15878 * 12 11 10 29 29 H 1.09006 * 110.91519 * 59.30132 * 15 13 12 30 30 H 1.09002 * 110.38519 * 336.14846 * 16 15 13 31 31 H 1.09000 * 110.39105 * 98.51903 * 16 15 13 32 32 H 1.07997 * 124.43883 * 196.40556 * 17 16 15 33 33 H 1.08005 * 124.44819 * 180.02562 * 18 17 16 34 34 H 1.09000 * 110.38757 * 224.75183 * 19 18 17 35 35 H 1.09000 * 110.48315 * 102.41901 * 19 18 17 36 36 H 1.09003 * 110.48678 * 335.77737 * 20 11 10 37 37 H 1.08999 * 110.49079 * 98.42519 * 20 11 10 38 38 H 1.08999 * 110.75915 * 279.62831 * 21 20 11 39 39 H 1.08993 * 110.76130 * 156.25324 * 21 20 11 40 40 H 1.09000 * 110.48245 * 203.38146 * 22 21 20 41 41 H 1.08995 * 110.48247 * 80.73683 * 22 21 20 42 42 H 1.08997 * 110.03607 * 238.57477 * 23 11 10 43 43 H 1.08999 * 110.02890 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0067 5 1 1.8864 2.3994 -1.2090 6 1 1.8966 2.3935 1.2159 7 6 2.0103 -1.2022 -0.0059 8 1 3.0903 -1.2022 -0.0103 9 7 1.3256 -2.3880 -0.0059 10 6 2.0581 -3.6568 -0.0116 11 6 1.0692 -4.8171 0.1177 12 7 0.0566 -4.7330 -0.9377 13 6 0.4151 -4.8791 -2.2287 14 8 1.5863 -4.9877 -2.5242 15 6 -0.6394 -4.9076 -3.3049 16 6 -1.5563 -6.1431 -3.1512 17 6 -1.8456 -6.5846 -4.5677 18 6 -1.0020 -6.0505 -5.4083 19 6 -0.0087 -5.1643 -4.6933 20 6 0.3932 -4.7834 1.5039 21 6 0.2531 -6.2756 1.8947 22 6 1.5684 -6.8941 1.3590 23 6 1.8164 -6.1592 0.0255 24 1 -0.4850 0.8401 0.0041 25 1 0.3556 -2.3880 -0.0022 26 1 2.6110 -3.7530 -0.9460 27 1 2.7546 -3.6779 0.8266 28 1 -0.8718 -4.5722 -0.7074 29 1 -1.2213 -3.9859 -3.3040 30 1 -1.0406 -6.9331 -2.6052 31 1 -2.4803 -5.8693 -2.6419 32 1 -2.6457 -7.2539 -4.8474 33 1 -1.0125 -6.2198 -6.4750 34 1 0.1189 -4.2253 -5.2319 35 1 0.9492 -5.6735 -4.5870 36 1 1.0224 -4.2583 2.2226 37 1 -0.5877 -4.3124 1.4387 38 1 -0.6117 -6.7236 1.4053 39 1 0.1867 -6.3870 2.9769 40 1 1.4450 -7.9635 1.1880 41 1 2.3873 -6.7098 2.0542 42 1 1.4251 -6.7482 -0.8039 43 1 2.8835 -5.9837 -0.1109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715088458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:31 Heat of formation + Delta-G solvation = -18.368696 kcal Electronic energy + Delta-G solvation = -22733.324886 eV Core-core repulsion = 19585.317201 eV Total energy + Delta-G solvation = -3148.007685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.30104 -38.53560 -36.75964 -34.26046 -33.09478 -31.05872 -29.55129 -28.57408 -28.14960 -27.63480 -24.46621 -22.56158 -22.09980 -20.65519 -19.71202 -18.90731 -18.62553 -17.05457 -17.01113 -16.18699 -15.79001 -14.97389 -14.68532 -14.42889 -14.08753 -13.67800 -13.14614 -12.95629 -12.79307 -12.65444 -12.39069 -12.16962 -11.86120 -11.72060 -11.38227 -11.26522 -11.10781 -11.00546 -10.91814 -10.85581 -10.80806 -10.62719 -10.40688 -10.37991 -9.97136 -9.65039 -9.26518 -8.90996 -8.75644 -8.46869 -6.80547 -5.71128 -2.96812 2.21667 3.10815 3.46684 3.52841 3.54843 3.58594 4.54128 4.62975 4.64934 4.74983 4.88662 5.01917 5.13818 5.21730 5.33898 5.58515 5.60876 5.65303 5.66703 5.69020 5.71583 5.79324 5.82402 5.91485 5.94852 6.00789 6.03752 6.07765 6.23547 6.26633 6.33375 6.46439 6.47794 6.53104 6.58126 6.65086 6.84370 6.99184 7.21185 7.77333 7.99724 8.48852 8.72756 9.60311 10.19431 10.55483 11.52350 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.006099 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.520030 B = 4589.861656 C = 5976.013332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.229 4.229 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.145 3.855 11 C 0.169 3.831 12 N -0.709 5.709 13 C 0.530 3.470 14 O -0.534 6.534 15 C -0.117 4.117 16 C -0.087 4.087 17 C -0.175 4.175 18 C -0.159 4.159 19 C -0.087 4.087 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.116 4.116 24 H 0.252 0.748 25 H 0.381 0.619 26 H 0.038 0.962 27 H 0.024 0.976 28 H 0.396 0.604 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 -16.279 -2.938 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.360 4.360 8 H 0.087 0.913 9 N -0.370 5.370 10 C 0.017 3.983 11 C 0.083 3.917 12 N -0.360 5.360 13 C 0.316 3.684 14 O -0.410 6.410 15 C -0.139 4.139 16 C -0.124 4.124 17 C -0.193 4.193 18 C -0.177 4.177 19 C -0.125 4.125 20 C -0.155 4.155 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.155 4.155 24 H 0.062 0.938 25 H 0.215 0.785 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.230 0.770 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.729 -16.249 -3.137 16.964 hybrid contribution -0.410 1.199 0.014 1.268 sum -4.139 -15.049 -3.123 15.917 Atomic orbital electron populations 1.69657 1.05022 1.25252 1.58733 1.24674 0.95509 0.97471 1.03561 0.86137 0.78852 0.84323 0.77071 1.20638 1.22018 1.22008 1.19298 0.91052 0.84262 1.41403 0.91344 1.42209 1.05644 0.99738 1.89377 1.21160 0.93064 0.85118 0.98975 1.21228 0.88780 0.95339 0.86324 1.46021 1.11121 1.73218 1.05617 1.20082 0.89562 0.75579 0.83151 1.90650 1.18996 1.49288 1.82098 1.22179 0.96550 1.00401 0.94749 1.21293 0.98961 0.96236 0.95896 1.23199 0.99888 1.01228 0.94959 1.23350 0.96577 0.98634 0.99092 1.21268 0.98892 0.99693 0.92611 1.22582 1.01369 0.95992 0.95565 1.22529 0.97538 0.95899 1.00263 1.22388 0.97743 0.98970 0.97120 1.22395 1.01076 0.94940 0.97049 0.93798 0.78502 0.94464 0.95778 0.76994 0.87635 0.90518 0.90577 0.85884 0.85845 0.90746 0.88831 0.89712 0.91028 0.91855 0.91727 0.92141 0.91629 0.91607 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 3 Si 0.90 23.00 29.55 -169.99 -5.02 17.97 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.23 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.60 5.27 -59.90 -0.32 -18.92 16 10 C 0.15 3.14 4.64 -4.04 -0.02 3.12 16 11 C 0.17 2.82 0.57 -130.70 -0.07 2.74 16 12 N -0.71 -11.18 4.49 -46.57 -0.21 -11.39 16 13 C 0.53 8.98 6.10 -10.99 -0.07 8.91 16 14 O -0.53 -10.84 12.80 5.56 0.07 -10.77 16 15 C -0.12 -1.62 3.55 -90.06 -0.32 -1.94 16 16 C -0.09 -0.95 6.37 -26.80 -0.17 -1.12 16 17 C -0.17 -1.80 10.78 -35.67 -0.38 -2.19 16 18 C -0.16 -1.75 10.77 -35.70 -0.38 -2.13 16 19 C -0.09 -1.18 6.16 -26.82 -0.17 -1.34 16 20 C -0.12 -1.74 5.74 -25.07 -0.14 -1.88 16 21 C -0.12 -1.46 6.91 -24.73 -0.17 -1.63 16 22 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16 23 C -0.12 -1.72 5.22 -25.61 -0.13 -1.86 16 24 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.38 10.00 7.19 -40.82 -0.29 9.70 16 26 H 0.04 0.91 6.56 -51.93 -0.34 0.57 16 27 H 0.02 0.53 8.04 -51.93 -0.42 0.11 16 28 H 0.40 5.48 8.23 -40.82 -0.34 5.14 16 29 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.41 7.00 -51.93 -0.36 1.04 16 36 H 0.08 1.38 7.78 -51.93 -0.40 0.98 16 37 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.01 6.99 -51.93 -0.36 0.64 16 43 H 0.07 1.14 7.67 -51.93 -0.40 0.74 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -32.54 339.93 -9.16 -41.70 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -7.08 Total: 12.25 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.45 Total: -8.31 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.20 Total: -57.97 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.54 -9.16 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715088458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.330 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds