Wall clock time and date at job start Mon Mar 30 2020 23:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47207 * 180.27472 * 3 2 1 5 5 H 1.48495 * 109.47300 * 300.27886 * 3 2 1 6 6 H 1.48502 * 109.47010 * 60.27608 * 3 2 1 7 7 C 1.38815 * 120.00099 * 180.28163 * 2 1 3 8 8 H 1.07998 * 120.00366 * 179.72801 * 7 2 1 9 9 N 1.36935 * 119.99545 * 359.72021 * 7 2 1 10 10 C 1.46505 * 119.99726 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47013 * 174.90351 * 10 9 7 12 12 N 1.46508 * 110.01487 * 55.11959 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.16414 * 12 11 10 14 14 O 1.21278 * 120.00239 * 354.90004 * 13 12 11 15 15 C 1.50700 * 119.99626 * 174.90218 * 13 12 11 16 16 C 1.54626 * 111.04098 * 295.33170 * 15 13 12 17 17 C 1.51164 * 104.69943 * 217.36264 * 16 15 13 18 18 C 1.30526 * 111.11596 * 16.37856 * 17 16 15 19 19 C 1.51105 * 111.10783 * 0.03726 * 18 17 16 20 20 C 1.54263 * 110.03508 * 293.68066 * 11 10 9 21 21 C 1.54891 * 104.19537 * 217.10527 * 20 11 10 22 22 C 1.54898 * 102.74869 * 37.93932 * 21 20 11 23 23 C 1.53874 * 110.03309 * 176.50821 * 11 10 9 24 24 H 0.97001 * 119.99890 * 359.72351 * 1 2 3 25 25 H 0.97001 * 120.00428 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47436 * 294.90719 * 10 9 7 27 27 H 1.09003 * 109.46735 * 54.91102 * 10 9 7 28 28 H 0.96993 * 120.00090 * 245.15878 * 12 11 10 29 29 H 1.09006 * 110.91519 * 59.30132 * 15 13 12 30 30 H 1.09002 * 110.38519 * 336.14846 * 16 15 13 31 31 H 1.09000 * 110.39105 * 98.51903 * 16 15 13 32 32 H 1.07997 * 124.43883 * 196.40556 * 17 16 15 33 33 H 1.08005 * 124.44819 * 180.02562 * 18 17 16 34 34 H 1.09000 * 110.38757 * 224.75183 * 19 18 17 35 35 H 1.09000 * 110.48315 * 102.41901 * 19 18 17 36 36 H 1.09003 * 110.48678 * 335.77737 * 20 11 10 37 37 H 1.08999 * 110.49079 * 98.42519 * 20 11 10 38 38 H 1.08999 * 110.75915 * 279.62831 * 21 20 11 39 39 H 1.08993 * 110.76130 * 156.25324 * 21 20 11 40 40 H 1.09000 * 110.48245 * 203.38146 * 22 21 20 41 41 H 1.08995 * 110.48247 * 80.73683 * 22 21 20 42 42 H 1.08997 * 110.03607 * 238.57477 * 23 11 10 43 43 H 1.08999 * 110.02890 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0067 5 1 1.8864 2.3994 -1.2090 6 1 1.8966 2.3935 1.2159 7 6 2.0103 -1.2022 -0.0059 8 1 3.0903 -1.2022 -0.0103 9 7 1.3256 -2.3880 -0.0059 10 6 2.0581 -3.6568 -0.0116 11 6 1.0692 -4.8171 0.1177 12 7 0.0566 -4.7330 -0.9377 13 6 0.4151 -4.8791 -2.2287 14 8 1.5863 -4.9877 -2.5242 15 6 -0.6394 -4.9076 -3.3049 16 6 -1.5563 -6.1431 -3.1512 17 6 -1.8456 -6.5846 -4.5677 18 6 -1.0020 -6.0505 -5.4083 19 6 -0.0087 -5.1643 -4.6933 20 6 0.3932 -4.7834 1.5039 21 6 0.2531 -6.2756 1.8947 22 6 1.5684 -6.8941 1.3590 23 6 1.8164 -6.1592 0.0255 24 1 -0.4850 0.8401 0.0041 25 1 0.3556 -2.3880 -0.0022 26 1 2.6110 -3.7530 -0.9460 27 1 2.7546 -3.6779 0.8266 28 1 -0.8718 -4.5722 -0.7074 29 1 -1.2213 -3.9859 -3.3040 30 1 -1.0406 -6.9331 -2.6052 31 1 -2.4803 -5.8693 -2.6419 32 1 -2.6457 -7.2539 -4.8474 33 1 -1.0125 -6.2198 -6.4750 34 1 0.1189 -4.2253 -5.2319 35 1 0.9492 -5.6735 -4.5870 36 1 1.0224 -4.2583 2.2226 37 1 -0.5877 -4.3124 1.4387 38 1 -0.6117 -6.7236 1.4053 39 1 0.1867 -6.3870 2.9769 40 1 1.4450 -7.9635 1.1880 41 1 2.3873 -6.7098 2.0542 42 1 1.4251 -6.7482 -0.8039 43 1 2.8835 -5.9837 -0.1109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715088458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:30 Heat of formation + Delta-G solvation = -38.949593 kcal Electronic energy + Delta-G solvation = -22734.217341 eV Core-core repulsion = 19585.317201 eV Total energy + Delta-G solvation = -3148.900139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60482 -39.66849 -37.97967 -36.18149 -34.50588 -33.03383 -30.76287 -29.73891 -29.27216 -28.93512 -26.31132 -24.11811 -23.56759 -21.75719 -20.90313 -20.24338 -19.59303 -19.13712 -18.23806 -17.39009 -16.95651 -16.51698 -16.13563 -15.91556 -15.56029 -15.11933 -15.00690 -14.53786 -14.08138 -13.79284 -13.63507 -13.44632 -13.20195 -13.02090 -12.85286 -12.80406 -12.49708 -12.29973 -12.16982 -12.08390 -12.04511 -11.97525 -11.89649 -11.75560 -11.71021 -11.39376 -11.03602 -10.54496 -9.90331 -9.77951 -8.96481 -7.97088 -5.23302 1.38609 1.43503 1.44464 1.54438 1.76395 2.29992 2.54046 3.35308 3.49097 3.56207 3.67383 3.74407 3.87093 4.02066 4.17999 4.27235 4.38338 4.41814 4.53245 4.56973 4.64805 4.70328 4.78197 4.82204 4.84305 4.89581 4.92995 4.96663 5.06754 5.10131 5.12432 5.19701 5.20901 5.26826 5.36749 5.45737 5.50459 5.60814 5.78777 6.02850 6.25961 6.69802 7.33223 7.40569 8.07642 8.36885 9.26202 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.006099 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.520030 B = 4589.861656 C = 5976.013332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.245 4.245 8 H 0.063 0.937 9 N -0.729 5.729 10 C 0.147 3.853 11 C 0.172 3.828 12 N -0.702 5.702 13 C 0.523 3.477 14 O -0.575 6.575 15 C -0.119 4.119 16 C -0.081 4.081 17 C -0.162 4.162 18 C -0.171 4.171 19 C -0.091 4.091 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.110 4.110 24 H 0.252 0.748 25 H 0.377 0.623 26 H 0.006 0.994 27 H 0.021 0.979 28 H 0.407 0.593 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 -17.707 -2.445 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.214 1.214 7 C -0.377 4.377 8 H 0.081 0.919 9 N -0.372 5.372 10 C 0.020 3.980 11 C 0.085 3.915 12 N -0.353 5.353 13 C 0.311 3.689 14 O -0.454 6.454 15 C -0.140 4.140 16 C -0.119 4.119 17 C -0.179 4.179 18 C -0.189 4.189 19 C -0.129 4.129 20 C -0.153 4.153 21 C -0.149 4.149 22 C -0.155 4.155 23 C -0.149 4.149 24 H 0.061 0.939 25 H 0.210 0.790 26 H 0.024 0.976 27 H 0.039 0.961 28 H 0.243 0.757 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.264 -17.698 -2.629 18.651 hybrid contribution 0.127 1.668 -0.153 1.679 sum -5.137 -16.031 -2.782 17.062 Atomic orbital electron populations 1.69783 1.06189 1.25901 1.59524 1.25426 0.96457 1.00526 1.03694 0.85140 0.78000 0.80149 0.76881 1.19843 1.22039 1.21410 1.19589 0.91128 0.85768 1.41243 0.91935 1.42263 1.05480 1.00311 1.89106 1.21197 0.94088 0.85721 0.97041 1.21160 0.88388 0.94070 0.87836 1.45986 1.11502 1.72507 1.05264 1.20706 0.89708 0.74589 0.83936 1.90632 1.20893 1.51139 1.82757 1.22199 0.96172 1.01975 0.93660 1.21316 0.99017 0.94580 0.96954 1.23453 0.99891 1.00620 0.93979 1.23376 0.96313 0.98933 1.00236 1.21245 0.98907 0.99745 0.92964 1.22531 1.00534 0.98604 0.93628 1.22490 0.97862 0.92851 1.01655 1.22377 0.98164 0.99883 0.95052 1.22314 0.99516 0.94097 0.98992 0.93944 0.78978 0.97568 0.96115 0.75706 0.87789 0.90444 0.88328 0.82896 0.83877 0.91781 0.91125 0.91535 0.91043 0.90135 0.89755 0.89812 0.91249 0.91969 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.81 13.06 21.65 0.28 -58.53 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.97 47.65 29.55 68.60 2.03 49.68 16 4 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 8 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -38.46 5.27 -343.44 -1.81 -40.27 16 10 C 0.15 6.64 4.64 86.38 0.40 7.04 16 11 C 0.17 5.77 0.57 4.33 0.00 5.78 16 12 N -0.70 -22.22 4.49 -419.64 -1.88 -24.10 16 13 C 0.52 18.17 6.10 87.66 0.54 18.70 16 14 O -0.57 -24.57 12.80 -3.02 -0.04 -24.61 16 15 C -0.12 -3.27 3.55 -10.43 -0.04 -3.31 16 16 C -0.08 -1.61 6.37 30.55 0.19 -1.41 16 17 C -0.16 -2.88 10.78 26.28 0.28 -2.59 16 18 C -0.17 -3.51 10.77 26.26 0.28 -3.23 16 19 C -0.09 -2.51 6.16 30.53 0.19 -2.33 16 20 C -0.11 -3.30 5.74 31.67 0.18 -3.12 16 21 C -0.11 -2.27 6.91 31.89 0.22 -2.05 16 22 C -0.12 -2.54 6.83 31.67 0.22 -2.32 16 23 C -0.11 -3.26 5.22 31.32 0.16 -3.10 16 24 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.38 20.25 7.19 -92.71 -0.67 19.58 16 26 H 0.01 0.33 6.56 -2.39 -0.02 0.31 16 27 H 0.02 0.95 8.04 -2.39 -0.02 0.93 16 28 H 0.41 10.97 8.23 -92.71 -0.76 10.21 16 29 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 30 H 0.08 1.56 7.88 -2.39 -0.02 1.54 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.25 7.00 -2.39 -0.02 2.24 16 36 H 0.07 2.16 7.78 -2.39 -0.02 2.14 16 37 H 0.07 2.04 7.70 -2.39 -0.02 2.02 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.88 6.99 -2.39 -0.02 1.86 16 43 H 0.05 1.72 7.67 -2.39 -0.02 1.71 16 Total: -1.00 -71.74 339.93 2.09 -69.66 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.43 Total: 37.29 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 3.94 Total: -9.11 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -3.41 Total: -122.90 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.04 Total: -24.61 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -71.74 2.09 -69.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715088458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.708 kcal (2) G-P(sol) polarization free energy of solvation -71.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds