Wall clock time and date at job start Mon Mar 30 2020 23:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99971 * 2 1 4 4 H 1.48491 * 109.47300 * 240.00208 * 3 2 1 5 5 H 1.48504 * 109.46915 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46808 * 120.00032 * 3 2 1 7 7 C 1.38811 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99493 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00409 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00137 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46896 * 180.02562 * 10 9 7 12 12 C 1.31003 * 119.99784 * 127.00830 * 11 10 9 13 13 C 1.50695 * 119.99993 * 7.55518 * 12 11 10 14 14 N 1.46503 * 109.47314 * 127.16120 * 13 12 11 15 15 C 1.34770 * 120.00159 * 180.27475 * 14 13 12 16 16 O 1.21279 * 120.00257 * 359.72428 * 15 14 13 17 17 C 1.50705 * 119.99671 * 179.72069 * 15 14 13 18 18 C 1.50702 * 109.46626 * 180.02562 * 17 15 14 19 19 C 1.29445 * 117.95980 * 94.73775 * 18 17 15 20 20 C 1.50069 * 124.07641 * 180.22888 * 19 18 17 21 21 C 1.53023 * 110.20060 * 343.32320 * 20 19 18 22 22 C 1.53401 * 108.44007 * 49.24399 * 21 20 19 23 23 C 1.50065 * 117.96301 * 274.99771 * 18 17 15 24 24 H 0.97004 * 119.99879 * 0.02562 * 1 2 3 25 25 H 0.97007 * 119.99797 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47066 * 60.00065 * 10 9 7 27 27 H 1.09003 * 109.47004 * 299.99725 * 10 9 7 28 28 H 1.08005 * 120.00273 * 307.00497 * 11 10 9 29 29 H 1.07997 * 119.99749 * 187.56130 * 12 11 10 30 30 H 1.09000 * 109.47307 * 7.15352 * 13 12 11 31 31 H 1.09001 * 109.47375 * 247.15813 * 13 12 11 32 32 H 0.97007 * 119.99258 * 359.97438 * 14 13 12 33 33 H 1.08993 * 109.47098 * 299.99844 * 17 15 14 34 34 H 1.08997 * 109.46840 * 60.00492 * 17 15 14 35 35 H 1.08001 * 117.96621 * 0.46692 * 19 18 17 36 36 H 1.08994 * 109.48841 * 223.00182 * 20 19 18 37 37 H 1.09004 * 109.17592 * 103.44535 * 20 19 18 38 38 H 1.08997 * 109.64394 * 289.56282 * 21 20 19 39 39 H 1.09003 * 109.81830 * 169.02734 * 21 20 19 40 40 H 1.08999 * 109.64462 * 172.87963 * 22 21 20 41 41 H 1.09000 * 109.64320 * 52.24496 * 22 21 20 42 42 H 1.09001 * 109.36194 * 283.05465 * 23 18 17 43 43 H 1.09004 * 109.35840 * 42.78335 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1726 -5.7436 -0.9073 13 6 2.3549 -5.7754 -1.8412 14 7 2.9766 -7.1013 -1.7971 15 6 4.0620 -7.3621 -2.5522 16 8 4.5211 -6.5008 -3.2721 17 6 4.7051 -8.7241 -2.5020 18 6 5.8911 -8.7540 -3.4313 19 6 7.0595 -8.5062 -2.9324 20 6 8.3298 -8.4946 -3.7315 21 6 8.1177 -9.2029 -5.0712 22 6 6.8478 -8.6399 -5.7220 23 6 5.6432 -9.0635 -4.8787 24 1 -0.4850 0.8401 -0.0004 25 1 0.3556 -2.3880 -0.0005 26 1 2.6848 -3.7145 0.8894 27 1 2.6848 -3.7145 -0.8906 28 1 0.2997 -4.8470 0.7454 29 1 0.4026 -6.4968 -0.9851 30 1 3.0812 -5.0231 -1.5337 31 1 2.0212 -5.5643 -2.8572 32 1 2.6095 -7.7901 -1.2210 33 1 5.0360 -8.9324 -1.4845 34 1 3.9820 -9.4790 -2.8107 35 1 7.1249 -8.2984 -1.8746 36 1 9.1150 -9.0046 -3.1735 37 1 8.6298 -7.4624 -3.9120 38 1 8.0003 -10.2737 -4.9051 39 1 8.9731 -9.0247 -5.7229 40 1 6.7462 -9.0377 -6.7318 41 1 6.9057 -7.5520 -5.7576 42 1 5.4787 -10.1346 -4.9962 43 1 4.7595 -8.5228 -5.2175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716275848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:31 Heat of formation + Delta-G solvation = -8.136162 kcal Electronic energy + Delta-G solvation = -20657.383499 eV Core-core repulsion = 17509.819530 eV Total energy + Delta-G solvation = -3147.563969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.98833 -38.39257 -36.51905 -34.46337 -33.16277 -32.69061 -30.92366 -30.44658 -28.13935 -26.06449 -24.69432 -23.43093 -22.47465 -21.98745 -20.44362 -18.73595 -17.75119 -17.20037 -16.58733 -16.37038 -15.85336 -15.36285 -14.91342 -14.49208 -14.37212 -13.95136 -13.80963 -13.44528 -13.35307 -13.21091 -12.89022 -12.63037 -12.44179 -12.37483 -12.29701 -11.84303 -11.68324 -10.98333 -10.94872 -10.77613 -10.65663 -10.43943 -10.41136 -10.05290 -9.95887 -9.76235 -9.14875 -9.01425 -8.89625 -8.57829 -6.91501 -5.76062 -3.05287 2.00778 2.32002 2.68477 3.46372 3.49051 3.50329 3.52244 4.37476 4.49297 4.62382 4.72483 4.83188 4.93789 5.00768 5.10049 5.14954 5.22787 5.30952 5.37996 5.39937 5.43247 5.56949 5.62951 5.70701 5.73165 5.77313 5.87754 5.91074 5.97007 5.99196 6.15349 6.26255 6.36559 6.48047 6.54981 6.59991 6.84664 6.88066 7.15197 7.54120 7.70564 8.27646 8.42457 9.53696 10.09522 10.45013 11.46696 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.002774 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.374778 B =10089.913067 C =10923.131638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.162 3.838 11 C -0.110 4.110 12 C -0.199 4.199 13 C 0.140 3.860 14 N -0.727 5.727 15 C 0.509 3.491 16 O -0.531 6.531 17 C -0.109 4.109 18 C -0.101 4.101 19 C -0.146 4.146 20 C -0.088 4.088 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.079 4.079 24 H 0.256 0.744 25 H 0.385 0.615 26 H 0.028 0.972 27 H 0.036 0.964 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.398 0.602 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 -24.421 -6.489 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.129 4.129 12 C -0.218 4.218 13 C 0.018 3.982 14 N -0.379 5.379 15 C 0.294 3.706 16 O -0.407 6.407 17 C -0.149 4.149 18 C -0.102 4.102 19 C -0.165 4.165 20 C -0.125 4.125 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.116 4.116 24 H 0.066 0.934 25 H 0.218 0.782 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.231 0.769 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.320 -23.636 -7.018 27.130 hybrid contribution -0.322 0.648 0.490 0.874 sum 10.998 -22.988 -6.529 26.306 Atomic orbital electron populations 1.69659 1.05141 1.25839 1.57582 1.24759 0.95565 0.97754 1.02855 0.86230 0.78512 0.83308 0.77938 1.21135 1.21632 1.21212 1.19206 0.91074 0.84005 1.42978 0.91121 1.42262 1.05891 0.99498 1.89537 1.20009 0.92990 0.84769 0.98732 1.23296 0.99083 0.94765 0.95780 1.22595 0.98844 1.02070 0.98336 1.20544 0.94001 0.84187 0.99440 1.46083 1.30636 1.15315 1.45844 1.20594 0.80155 0.89885 0.79917 1.90738 1.62492 1.47851 1.39587 1.20856 0.97612 0.95439 1.01013 1.20263 0.93314 1.01412 0.95192 1.21867 0.94120 1.00742 0.99726 1.20406 0.95616 1.01127 0.95372 1.21597 0.97913 0.99859 0.96331 1.21585 0.94351 1.01556 0.98216 1.20330 0.99002 1.00602 0.91622 0.93420 0.78164 0.95467 0.94668 0.86911 0.87098 0.89420 0.91220 0.76853 0.88537 0.88529 0.88108 0.91281 0.90800 0.91947 0.91864 0.91866 0.91345 0.91297 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.73 -19.03 5.59 -61.08 -0.34 -19.38 16 10 C 0.16 3.35 6.35 -5.19 -0.03 3.32 16 11 C -0.11 -1.80 9.63 -36.03 -0.35 -2.15 16 12 C -0.20 -2.73 9.63 -36.03 -0.35 -3.07 16 13 C 0.14 2.04 5.76 -5.19 -0.03 2.01 16 14 N -0.73 -8.34 5.55 -61.47 -0.34 -8.68 16 15 C 0.51 6.50 7.82 -10.99 -0.09 6.41 16 16 O -0.53 -9.25 16.03 5.56 0.09 -9.16 16 17 C -0.11 -0.96 5.71 -29.03 -0.17 -1.13 16 18 C -0.10 -1.02 4.33 -100.94 -0.44 -1.46 16 19 C -0.15 -1.46 9.37 -35.90 -0.34 -1.80 16 20 C -0.09 -0.76 6.11 -28.18 -0.17 -0.93 16 21 C -0.12 -0.93 6.01 -26.51 -0.16 -1.09 16 22 C -0.12 -1.07 6.01 -26.51 -0.16 -1.23 16 23 C -0.08 -0.73 5.80 -28.18 -0.16 -0.90 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.38 10.49 7.66 -40.82 -0.31 10.18 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.75 5.29 -51.93 -0.27 0.48 16 28 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.09 1.49 5.30 -51.93 -0.28 1.22 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.40 3.25 8.46 -40.82 -0.35 2.90 16 33 H 0.10 0.68 7.80 -51.93 -0.40 0.27 16 34 H 0.10 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.10 0.96 7.74 -52.49 -0.41 0.55 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -33.79 353.13 -9.31 -43.11 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.06 Total: 8.56 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.68 Total: -9.62 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.04 Total: -56.06 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.79 -9.31 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716275848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.969 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds