Wall clock time and date at job start Mon Mar 30 2020 23:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99971 * 2 1 4 4 H 1.48491 * 109.47300 * 240.00208 * 3 2 1 5 5 H 1.48504 * 109.46915 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46808 * 120.00032 * 3 2 1 7 7 C 1.38811 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99493 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00409 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00137 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46896 * 180.02562 * 10 9 7 12 12 C 1.31003 * 119.99784 * 127.00830 * 11 10 9 13 13 C 1.50695 * 119.99993 * 7.55518 * 12 11 10 14 14 N 1.46503 * 109.47314 * 127.16120 * 13 12 11 15 15 C 1.34770 * 120.00159 * 180.27475 * 14 13 12 16 16 O 1.21279 * 120.00257 * 359.72428 * 15 14 13 17 17 C 1.50705 * 119.99671 * 179.72069 * 15 14 13 18 18 C 1.50702 * 109.46626 * 180.02562 * 17 15 14 19 19 C 1.29445 * 117.95980 * 94.73775 * 18 17 15 20 20 C 1.50069 * 124.07641 * 180.22888 * 19 18 17 21 21 C 1.53023 * 110.20060 * 343.32320 * 20 19 18 22 22 C 1.53401 * 108.44007 * 49.24399 * 21 20 19 23 23 C 1.50065 * 117.96301 * 274.99771 * 18 17 15 24 24 H 0.97004 * 119.99879 * 0.02562 * 1 2 3 25 25 H 0.97007 * 119.99797 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47066 * 60.00065 * 10 9 7 27 27 H 1.09003 * 109.47004 * 299.99725 * 10 9 7 28 28 H 1.08005 * 120.00273 * 307.00497 * 11 10 9 29 29 H 1.07997 * 119.99749 * 187.56130 * 12 11 10 30 30 H 1.09000 * 109.47307 * 7.15352 * 13 12 11 31 31 H 1.09001 * 109.47375 * 247.15813 * 13 12 11 32 32 H 0.97007 * 119.99258 * 359.97438 * 14 13 12 33 33 H 1.08993 * 109.47098 * 299.99844 * 17 15 14 34 34 H 1.08997 * 109.46840 * 60.00492 * 17 15 14 35 35 H 1.08001 * 117.96621 * 0.46692 * 19 18 17 36 36 H 1.08994 * 109.48841 * 223.00182 * 20 19 18 37 37 H 1.09004 * 109.17592 * 103.44535 * 20 19 18 38 38 H 1.08997 * 109.64394 * 289.56282 * 21 20 19 39 39 H 1.09003 * 109.81830 * 169.02734 * 21 20 19 40 40 H 1.08999 * 109.64462 * 172.87963 * 22 21 20 41 41 H 1.09000 * 109.64320 * 52.24496 * 22 21 20 42 42 H 1.09001 * 109.36194 * 283.05465 * 23 18 17 43 43 H 1.09004 * 109.35840 * 42.78335 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1726 -5.7436 -0.9073 13 6 2.3549 -5.7754 -1.8412 14 7 2.9766 -7.1013 -1.7971 15 6 4.0620 -7.3621 -2.5522 16 8 4.5211 -6.5008 -3.2721 17 6 4.7051 -8.7241 -2.5020 18 6 5.8911 -8.7540 -3.4313 19 6 7.0595 -8.5062 -2.9324 20 6 8.3298 -8.4946 -3.7315 21 6 8.1177 -9.2029 -5.0712 22 6 6.8478 -8.6399 -5.7220 23 6 5.6432 -9.0635 -4.8787 24 1 -0.4850 0.8401 -0.0004 25 1 0.3556 -2.3880 -0.0005 26 1 2.6848 -3.7145 0.8894 27 1 2.6848 -3.7145 -0.8906 28 1 0.2997 -4.8470 0.7454 29 1 0.4026 -6.4968 -0.9851 30 1 3.0812 -5.0231 -1.5337 31 1 2.0212 -5.5643 -2.8572 32 1 2.6095 -7.7901 -1.2210 33 1 5.0360 -8.9324 -1.4845 34 1 3.9820 -9.4790 -2.8107 35 1 7.1249 -8.2984 -1.8746 36 1 9.1150 -9.0046 -3.1735 37 1 8.6298 -7.4624 -3.9120 38 1 8.0003 -10.2737 -4.9051 39 1 8.9731 -9.0247 -5.7229 40 1 6.7462 -9.0377 -6.7318 41 1 6.9057 -7.5520 -5.7576 42 1 5.4787 -10.1346 -4.9962 43 1 4.7595 -8.5228 -5.2175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716275848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:30 Heat of formation + Delta-G solvation = -30.210159 kcal Electronic energy + Delta-G solvation = -20658.340699 eV Core-core repulsion = 17509.819530 eV Total energy + Delta-G solvation = -3148.521169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96655 -39.20095 -37.93108 -36.08136 -34.43812 -33.75917 -32.33216 -31.61924 -29.13645 -27.54759 -26.10317 -24.41709 -24.14077 -22.73464 -21.45324 -20.12916 -19.01839 -18.47784 -17.75225 -17.56571 -16.87441 -16.51914 -16.25059 -15.81016 -15.45813 -15.18099 -15.07662 -14.67741 -14.60484 -14.29221 -14.20824 -13.89436 -13.51699 -13.23625 -13.10904 -12.99965 -12.91336 -12.72350 -12.54560 -12.23931 -11.92190 -11.67744 -11.65899 -11.33334 -11.12035 -11.05521 -10.99025 -10.32488 -9.92867 -9.63986 -9.01969 -7.99692 -5.29476 1.01332 1.31743 1.44937 1.48426 1.54736 1.68856 2.50019 2.55838 3.33429 3.66193 3.78992 3.81240 4.03023 4.07520 4.12744 4.15601 4.29299 4.33426 4.36638 4.47939 4.56566 4.62150 4.70235 4.74619 4.77033 4.85276 4.88807 5.00060 5.03508 5.07171 5.09916 5.19370 5.32754 5.40822 5.43340 5.46996 5.56938 5.76420 5.85187 6.11645 6.22948 6.62475 7.28797 7.32483 8.02288 8.27448 9.23501 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.002774 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.374778 B =10089.913067 C =10923.131638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.976 3.024 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.254 4.254 8 H 0.072 0.928 9 N -0.741 5.741 10 C 0.161 3.839 11 C -0.136 4.136 12 C -0.157 4.157 13 C 0.141 3.859 14 N -0.712 5.712 15 C 0.505 3.495 16 O -0.585 6.585 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.158 4.158 20 C -0.092 4.092 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.080 4.080 24 H 0.254 0.746 25 H 0.376 0.624 26 H 0.024 0.976 27 H 0.030 0.970 28 H 0.125 0.875 29 H 0.152 0.848 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.418 0.582 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.276 -26.719 -6.362 29.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.384 5.384 10 C 0.036 3.964 11 C -0.156 4.156 12 C -0.176 4.176 13 C 0.017 3.983 14 N -0.365 5.365 15 C 0.293 3.707 16 O -0.465 6.465 17 C -0.140 4.140 18 C -0.116 4.116 19 C -0.176 4.176 20 C -0.129 4.129 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.117 4.117 24 H 0.062 0.938 25 H 0.208 0.792 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.143 0.857 29 H 0.169 0.831 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.256 0.744 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.748 -25.998 -6.861 29.343 hybrid contribution -0.400 1.266 0.402 1.387 sum 11.349 -24.732 -6.459 27.967 Atomic orbital electron populations 1.69809 1.06564 1.26380 1.59008 1.25610 0.96512 1.01184 1.03251 0.85181 0.77270 0.78898 0.78239 1.20552 1.21627 1.20150 1.19596 0.91448 0.85419 1.42068 0.90977 1.42467 1.05689 1.00769 1.89490 1.20074 0.93786 0.84498 0.98083 1.23040 0.99519 0.94607 0.98394 1.22802 0.98223 1.01256 0.95322 1.20317 0.93850 0.85230 0.98880 1.45887 1.30219 1.14521 1.45848 1.21372 0.79742 0.90879 0.78726 1.90723 1.64001 1.49858 1.41878 1.20902 0.97593 0.93254 1.02263 1.20514 0.93816 1.01470 0.95785 1.22087 0.94793 1.00639 1.00116 1.20464 0.95639 1.00731 0.96075 1.21585 0.97562 1.00280 0.95821 1.21600 0.95144 0.99999 0.99235 1.20362 0.98271 1.01690 0.91335 0.93765 0.79203 0.95844 0.95222 0.85676 0.83055 0.92414 0.92385 0.74433 0.86163 0.85463 0.88002 0.89692 0.92110 0.90712 0.90883 0.90513 0.93991 0.89058 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 3 Si 0.98 47.44 29.55 68.60 2.03 49.46 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -39.52 5.59 -347.17 -1.94 -41.47 16 10 C 0.16 6.78 6.35 85.63 0.54 7.32 16 11 C -0.14 -4.32 9.63 25.64 0.25 -4.07 16 12 C -0.16 -3.93 9.63 25.64 0.25 -3.68 16 13 C 0.14 3.97 5.76 85.63 0.49 4.46 16 14 N -0.71 -14.94 5.55 -466.79 -2.59 -17.53 16 15 C 0.50 12.33 7.82 87.66 0.69 13.02 16 16 O -0.58 -20.77 16.03 -3.03 -0.05 -20.82 16 17 C -0.10 -1.53 5.71 29.10 0.17 -1.36 16 18 C -0.12 -2.16 4.33 -15.10 -0.07 -2.23 16 19 C -0.16 -3.00 9.37 27.04 0.25 -2.75 16 20 C -0.09 -1.52 6.11 29.66 0.18 -1.33 16 21 C -0.12 -1.63 6.01 30.74 0.18 -1.45 16 22 C -0.12 -2.11 6.01 30.74 0.18 -1.93 16 23 C -0.08 -1.40 5.80 29.66 0.17 -1.22 16 24 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 25 H 0.38 20.96 7.66 -92.70 -0.71 20.25 16 26 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.03 1.30 5.29 -2.39 -0.01 1.29 16 28 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.06 2.01 5.30 -2.39 -0.01 2.00 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.42 5.39 8.46 -92.70 -0.78 4.60 16 33 H 0.12 1.28 7.80 -2.39 -0.02 1.26 16 34 H 0.13 1.17 8.11 -2.39 -0.02 1.15 16 35 H 0.10 1.84 7.74 -2.91 -0.02 1.81 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -75.15 353.13 1.83 -73.32 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.49 Total: 30.28 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.60 Total: -13.10 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -4.25 Total: -119.15 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.46 kcal Total: -75.15 1.83 -73.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716275848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.110 kcal (2) G-P(sol) polarization free energy of solvation -75.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds