Wall clock time and date at job start Tue Mar 31 2020 00:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99683 * 2 1 4 4 H 1.48502 * 109.47100 * 269.99812 * 3 2 1 5 5 H 1.48494 * 109.47608 * 30.00187 * 3 2 1 6 6 H 1.48504 * 109.46869 * 150.00216 * 3 2 1 7 7 C 1.38807 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99910 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00042 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00159 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47233 * 180.02562 * 10 9 7 12 12 C 1.31002 * 120.00109 * 127.28794 * 11 10 9 13 13 C 1.50697 * 119.99898 * 7.70605 * 12 11 10 14 14 N 1.46506 * 109.47058 * 127.21075 * 13 12 11 15 15 C 1.34773 * 120.00136 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99915 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99591 * 180.02562 * 15 14 13 18 18 H 1.09004 * 110.09704 * 325.00231 * 17 15 14 19 19 C 1.54389 * 110.06458 * 203.49570 * 17 15 14 20 20 C 1.54926 * 104.21835 * 217.20109 * 19 17 15 21 21 C 1.54986 * 102.82402 * 37.72498 * 20 19 17 22 22 C 1.53476 * 110.07262 * 86.52901 * 17 15 14 23 23 C 1.52556 * 121.08491 * 335.16115 * 22 17 15 24 24 C 1.52579 * 121.04918 * 263.45276 * 22 17 15 25 25 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99998 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.47050 * 60.00472 * 10 9 7 28 28 H 1.09007 * 109.46948 * 300.00706 * 10 9 7 29 29 H 1.08001 * 119.99833 * 307.28000 * 11 10 9 30 30 H 1.08000 * 120.00043 * 187.71425 * 12 11 10 31 31 H 1.09001 * 109.47253 * 7.21524 * 13 12 11 32 32 H 1.08996 * 109.47732 * 247.21014 * 13 12 11 33 33 H 0.97000 * 119.99552 * 0.02562 * 14 13 12 34 34 H 1.08996 * 110.48468 * 335.88009 * 19 17 15 35 35 H 1.08997 * 110.48669 * 98.51594 * 19 17 15 36 36 H 1.09004 * 110.74525 * 279.39244 * 20 19 17 37 37 H 1.09005 * 110.90266 * 156.13234 * 20 19 17 38 38 H 1.08999 * 110.51586 * 203.78809 * 21 20 19 39 39 H 1.09005 * 110.62676 * 81.12988 * 21 20 19 40 40 H 1.08998 * 117.50633 * 357.03831 * 23 22 17 41 41 H 1.09002 * 117.50606 * 142.11162 * 23 22 17 42 42 H 1.09003 * 117.50570 * 217.93947 * 24 22 17 43 43 H 1.08997 * 117.50828 * 3.02458 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.5938 -2.1954 0.0000 12 6 6.3634 -2.7514 0.9026 13 6 5.8019 -3.7979 1.8302 14 7 6.6422 -4.9970 1.7794 15 6 6.3305 -6.0707 2.5320 16 8 5.3547 -6.0442 3.2516 17 6 7.1953 -7.3038 2.4801 18 1 7.5836 -7.4468 1.4716 19 6 6.3802 -8.5410 2.9143 20 6 7.3899 -9.3995 3.7167 21 6 8.2152 -8.3341 4.4822 22 6 8.3545 -7.1766 3.4779 23 6 8.8614 -5.8094 3.9262 24 6 9.7304 -6.6940 3.0284 25 1 -0.4850 0.8401 -0.0004 26 1 3.8647 -0.3620 -0.0004 27 1 3.8486 -3.0425 -0.8898 28 1 3.8491 -3.0422 0.8902 29 1 6.0212 -1.5397 -0.7442 30 1 7.4002 -2.4597 0.9820 31 1 4.7880 -4.0515 1.5207 32 1 5.7845 -3.4094 2.8484 33 1 7.4229 -5.0180 1.2041 34 1 5.5443 -8.2441 3.5476 35 1 6.0233 -9.0881 2.0417 36 1 8.0285 -9.9731 3.0449 37 1 6.8722 -10.0599 4.4124 38 1 9.1957 -8.7291 4.7482 39 1 7.6826 -8.0038 5.3741 40 1 8.4032 -4.9296 3.4744 41 1 9.1617 -5.7008 4.9684 42 1 10.6022 -7.1673 3.4800 43 1 9.8437 -6.3961 1.9861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716310842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:19 Heat of formation + Delta-G solvation = 15.062670 kcal Electronic energy + Delta-G solvation = -21234.311137 eV Core-core repulsion = 18087.753146 eV Total energy + Delta-G solvation = -3146.557992 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.65655 -38.31386 -36.66135 -34.81106 -34.22423 -32.84978 -30.91772 -29.69411 -26.91203 -25.92904 -24.87738 -22.81914 -22.07222 -21.52142 -20.63553 -19.56596 -18.58947 -17.44081 -16.84054 -16.37192 -16.09475 -15.55216 -15.08373 -14.78741 -14.45330 -13.95614 -13.79675 -13.60436 -13.21437 -13.05099 -12.77202 -12.72223 -12.50305 -12.00607 -11.85933 -11.78481 -11.34852 -11.22675 -11.16506 -10.86703 -10.85421 -10.57854 -10.54095 -10.34057 -10.12302 -9.68763 -9.59927 -9.23128 -9.06279 -8.66388 -7.22834 -5.76733 -3.13088 2.13082 2.60113 3.18174 3.37752 3.40256 3.45469 3.55764 4.05313 4.26300 4.49969 4.52029 4.59128 4.72872 4.88093 4.93941 5.01632 5.14473 5.18241 5.30524 5.31042 5.43197 5.51777 5.53791 5.56436 5.59026 5.63255 5.66657 5.75826 5.78418 5.80157 5.83258 5.89761 6.07547 6.13394 6.27871 6.43792 6.49431 6.75432 7.01320 7.47159 7.98946 8.21752 8.41850 9.20242 9.92116 10.11642 11.41485 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032522 B = 0.003005 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.761217 B = 9316.845302 C = 9792.614735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.751 5.751 10 C 0.166 3.834 11 C -0.119 4.119 12 C -0.193 4.193 13 C 0.138 3.862 14 N -0.725 5.725 15 C 0.519 3.481 16 O -0.533 6.533 17 C -0.077 4.077 18 H 0.092 0.908 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.087 4.087 22 C -0.119 4.119 23 C -0.173 4.173 24 C -0.165 4.165 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.411 -16.941 5.446 29.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.397 5.397 10 C 0.040 3.960 11 C -0.138 4.138 12 C -0.212 4.212 13 C 0.016 3.984 14 N -0.377 5.377 15 C 0.305 3.695 16 O -0.409 6.409 17 C -0.098 4.098 18 H 0.111 0.889 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.210 4.210 24 C -0.202 4.202 25 H 0.070 0.930 26 H 0.194 0.806 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 22.419 -16.993 5.975 28.759 hybrid contribution 1.051 1.489 -0.405 1.867 sum 23.470 -15.504 5.570 28.674 Atomic orbital electron populations 1.69708 1.05099 1.25879 1.57377 1.24678 0.95258 0.97254 1.01906 0.86523 0.79252 0.84882 0.77750 1.21045 1.21647 1.20287 1.19071 0.80413 0.94886 1.43236 0.89108 1.42618 1.03957 1.01881 1.91211 1.19970 0.86499 0.89959 0.99560 1.23311 0.96800 0.97766 0.95936 1.22635 1.00144 1.00344 0.98124 1.20571 0.95112 0.83251 0.99495 1.46122 1.30719 1.14921 1.45892 1.20470 0.85321 0.84284 0.79471 1.90708 1.28103 1.82385 1.39675 1.21434 0.94483 0.93981 0.99914 0.88943 1.22372 0.98498 0.93512 1.00721 1.22448 0.97444 0.97077 0.98774 1.21879 1.00146 0.93438 0.96984 1.21553 0.94111 0.96823 0.99461 1.23087 1.03468 0.93881 1.00577 1.23047 0.93362 1.03509 1.00276 0.92995 0.80555 0.94557 0.93912 0.86936 0.87036 0.89213 0.91086 0.76927 0.89182 0.91131 0.91392 0.91099 0.91471 0.90891 0.88251 0.88544 0.88497 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.81 13.97 55.49 0.78 -29.03 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 22.37 27.74 -169.99 -4.71 17.66 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.25 -7.16 10.47 -15.06 -0.16 -7.32 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.75 -18.30 5.40 -61.09 -0.33 -18.63 16 10 C 0.17 3.27 6.34 -5.20 -0.03 3.23 16 11 C -0.12 -1.79 9.63 -36.03 -0.35 -2.14 16 12 C -0.19 -2.44 9.63 -36.03 -0.35 -2.79 16 13 C 0.14 1.89 5.75 -5.19 -0.03 1.86 16 14 N -0.73 -8.07 4.66 -61.47 -0.29 -8.36 16 15 C 0.52 6.60 5.92 -10.99 -0.07 6.53 16 16 O -0.53 -9.17 15.57 5.56 0.09 -9.09 16 17 C -0.08 -0.72 3.16 -90.80 -0.29 -1.00 16 18 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 19 C -0.11 -1.06 6.31 -24.99 -0.16 -1.22 16 20 C -0.12 -0.88 6.91 -24.67 -0.17 -1.05 16 21 C -0.09 -0.67 6.58 -25.23 -0.17 -0.84 16 22 C -0.12 -0.98 2.26 -154.25 -0.35 -1.33 16 23 C -0.17 -1.46 9.63 -26.91 -0.26 -1.72 16 24 C -0.17 -1.09 10.23 -26.90 -0.28 -1.36 16 25 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 26 H 0.36 8.53 5.52 -40.82 -0.23 8.31 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.87 5.31 -51.92 -0.28 0.59 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.09 1.46 5.31 -51.93 -0.28 1.18 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 3.26 8.46 -40.82 -0.35 2.92 16 34 H 0.09 1.07 6.80 -51.93 -0.35 0.71 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.43 8.11 -51.93 -0.42 0.00 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.93 6.61 -51.93 -0.34 0.59 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -34.01 346.42 -8.89 -42.90 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.90 Total: 8.41 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.74 Total: -9.07 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.16 Total: -56.02 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.01 -8.89 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716310842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.962 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds