Wall clock time and date at job start Tue Mar 31 2020 00:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99683 * 2 1 4 4 H 1.48502 * 109.47100 * 269.99812 * 3 2 1 5 5 H 1.48494 * 109.47608 * 30.00187 * 3 2 1 6 6 H 1.48504 * 109.46869 * 150.00216 * 3 2 1 7 7 C 1.38807 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99910 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00042 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00159 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47233 * 180.02562 * 10 9 7 12 12 C 1.31002 * 120.00109 * 127.28794 * 11 10 9 13 13 C 1.50697 * 119.99898 * 7.70605 * 12 11 10 14 14 N 1.46506 * 109.47058 * 127.21075 * 13 12 11 15 15 C 1.34773 * 120.00136 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99915 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99591 * 180.02562 * 15 14 13 18 18 H 1.09004 * 110.09704 * 325.00231 * 17 15 14 19 19 C 1.54389 * 110.06458 * 203.49570 * 17 15 14 20 20 C 1.54926 * 104.21835 * 217.20109 * 19 17 15 21 21 C 1.54986 * 102.82402 * 37.72498 * 20 19 17 22 22 C 1.53476 * 110.07262 * 86.52901 * 17 15 14 23 23 C 1.52556 * 121.08491 * 335.16115 * 22 17 15 24 24 C 1.52579 * 121.04918 * 263.45276 * 22 17 15 25 25 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99998 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.47050 * 60.00472 * 10 9 7 28 28 H 1.09007 * 109.46948 * 300.00706 * 10 9 7 29 29 H 1.08001 * 119.99833 * 307.28000 * 11 10 9 30 30 H 1.08000 * 120.00043 * 187.71425 * 12 11 10 31 31 H 1.09001 * 109.47253 * 7.21524 * 13 12 11 32 32 H 1.08996 * 109.47732 * 247.21014 * 13 12 11 33 33 H 0.97000 * 119.99552 * 0.02562 * 14 13 12 34 34 H 1.08996 * 110.48468 * 335.88009 * 19 17 15 35 35 H 1.08997 * 110.48669 * 98.51594 * 19 17 15 36 36 H 1.09004 * 110.74525 * 279.39244 * 20 19 17 37 37 H 1.09005 * 110.90266 * 156.13234 * 20 19 17 38 38 H 1.08999 * 110.51586 * 203.78809 * 21 20 19 39 39 H 1.09005 * 110.62676 * 81.12988 * 21 20 19 40 40 H 1.08998 * 117.50633 * 357.03831 * 23 22 17 41 41 H 1.09002 * 117.50606 * 142.11162 * 23 22 17 42 42 H 1.09003 * 117.50570 * 217.93947 * 24 22 17 43 43 H 1.08997 * 117.50828 * 3.02458 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.5938 -2.1954 0.0000 12 6 6.3634 -2.7514 0.9026 13 6 5.8019 -3.7979 1.8302 14 7 6.6422 -4.9970 1.7794 15 6 6.3305 -6.0707 2.5320 16 8 5.3547 -6.0442 3.2516 17 6 7.1953 -7.3038 2.4801 18 1 7.5836 -7.4468 1.4716 19 6 6.3802 -8.5410 2.9143 20 6 7.3899 -9.3995 3.7167 21 6 8.2152 -8.3341 4.4822 22 6 8.3545 -7.1766 3.4779 23 6 8.8614 -5.8094 3.9262 24 6 9.7304 -6.6940 3.0284 25 1 -0.4850 0.8401 -0.0004 26 1 3.8647 -0.3620 -0.0004 27 1 3.8486 -3.0425 -0.8898 28 1 3.8491 -3.0422 0.8902 29 1 6.0212 -1.5397 -0.7442 30 1 7.4002 -2.4597 0.9820 31 1 4.7880 -4.0515 1.5207 32 1 5.7845 -3.4094 2.8484 33 1 7.4229 -5.0180 1.2041 34 1 5.5443 -8.2441 3.5476 35 1 6.0233 -9.0881 2.0417 36 1 8.0285 -9.9731 3.0449 37 1 6.8722 -10.0599 4.4124 38 1 9.1957 -8.7291 4.7482 39 1 7.6826 -8.0038 5.3741 40 1 8.4032 -4.9296 3.4744 41 1 9.1617 -5.7008 4.9684 42 1 10.6022 -7.1673 3.4800 43 1 9.8437 -6.3961 1.9861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716310842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:18 Heat of formation + Delta-G solvation = -7.695840 kcal Electronic energy + Delta-G solvation = -21235.298020 eV Core-core repulsion = 18087.753146 eV Total energy + Delta-G solvation = -3147.544875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.52711 -39.18091 -38.02120 -36.25454 -35.02887 -34.39194 -32.85378 -30.53229 -28.25008 -26.93513 -26.07054 -24.06629 -23.37981 -22.38946 -21.41890 -20.71048 -19.96809 -18.90677 -17.88089 -17.54667 -16.91133 -16.68003 -16.28834 -15.92572 -15.69158 -15.42332 -14.97455 -14.86059 -14.47146 -14.34921 -14.17351 -13.77693 -13.47205 -13.38823 -13.07796 -12.76183 -12.55183 -12.37377 -12.22326 -11.97383 -11.89822 -11.81887 -11.67860 -11.52967 -11.22089 -11.15279 -11.07670 -10.52840 -10.29453 -9.97717 -9.29796 -8.06857 -5.42206 0.99995 1.36049 1.41132 1.48767 1.60306 2.28687 2.46044 2.88025 3.24092 3.40506 3.60737 3.71759 3.81825 3.85844 3.88402 4.07719 4.09992 4.28269 4.29523 4.33988 4.48658 4.56028 4.65916 4.78936 4.80313 4.81871 4.86672 4.93548 5.01702 5.03333 5.08119 5.16018 5.18275 5.24341 5.27364 5.36357 5.48460 5.52627 5.67878 5.83680 6.16802 6.55399 7.02979 7.25706 7.76822 7.98716 9.14745 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032522 B = 0.003005 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.761217 B = 9316.845302 C = 9792.614735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.249 1.249 7 C -0.244 4.244 8 H 0.051 0.949 9 N -0.753 5.753 10 C 0.162 3.838 11 C -0.138 4.138 12 C -0.153 4.153 13 C 0.137 3.863 14 N -0.709 5.709 15 C 0.514 3.486 16 O -0.587 6.587 17 C -0.071 4.071 18 H 0.120 0.880 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.089 4.089 22 C -0.131 4.131 23 C -0.191 4.191 24 C -0.138 4.138 25 H 0.260 0.740 26 H 0.369 0.631 27 H 0.029 0.971 28 H 0.031 0.969 29 H 0.136 0.864 30 H 0.155 0.845 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.416 0.584 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.915 -16.769 4.785 32.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.174 1.174 7 C -0.375 4.375 8 H 0.069 0.931 9 N -0.399 5.399 10 C 0.037 3.963 11 C -0.157 4.157 12 C -0.172 4.172 13 C 0.013 3.987 14 N -0.361 5.361 15 C 0.302 3.698 16 O -0.467 6.467 17 C -0.092 4.092 18 H 0.138 0.862 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.228 4.228 24 C -0.174 4.174 25 H 0.069 0.931 26 H 0.203 0.797 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.154 0.846 30 H 0.173 0.827 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.253 0.747 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 27.006 -16.853 5.287 32.269 hybrid contribution -0.394 1.280 -0.143 1.347 sum 26.612 -15.573 5.144 31.260 Atomic orbital electron populations 1.69908 1.07328 1.26979 1.59218 1.25626 0.96255 1.01726 1.02084 0.85286 0.78601 0.78745 0.78402 1.19806 1.22092 1.17373 1.19034 0.82727 0.93537 1.42220 0.93114 1.42592 1.02330 1.03963 1.91024 1.20047 0.89785 0.87890 0.98575 1.23065 0.93690 1.00485 0.98470 1.22828 1.01542 0.97671 0.95202 1.20383 0.94380 0.84742 0.99176 1.45927 1.30722 1.13734 1.45689 1.21196 0.84851 0.85333 0.78397 1.90690 1.30618 1.83408 1.41995 1.21492 0.94185 0.91713 1.01835 0.86217 1.22385 0.98185 0.94278 1.00881 1.22439 0.96975 0.96792 0.98792 1.21893 1.00942 0.93478 0.96271 1.21605 0.94971 0.96942 0.99629 1.23098 1.04963 0.93651 1.01100 1.23162 0.92430 1.01059 1.00777 0.93132 0.79717 0.95353 0.95091 0.84597 0.82739 0.92417 0.92249 0.74683 0.92606 0.90197 0.89360 0.90861 0.89547 0.92760 0.89369 0.88759 0.86996 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.93 13.97 21.65 0.30 -64.62 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.96 46.08 27.74 68.60 1.90 47.98 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.25 -10.68 6.52 99.48 0.65 -10.04 16 7 C -0.24 -14.64 10.47 84.03 0.88 -13.76 16 8 H 0.05 3.36 8.06 -2.91 -0.02 3.33 16 9 N -0.75 -36.59 5.40 -347.18 -1.87 -38.46 16 10 C 0.16 6.41 6.34 85.63 0.54 6.95 16 11 C -0.14 -3.81 9.63 25.64 0.25 -3.56 16 12 C -0.15 -3.39 9.63 25.64 0.25 -3.14 16 13 C 0.14 3.67 5.75 85.63 0.49 4.16 16 14 N -0.71 -14.80 4.66 -466.79 -2.18 -16.97 16 15 C 0.51 13.03 5.92 87.66 0.52 13.55 16 16 O -0.59 -21.34 15.57 -3.02 -0.05 -21.39 16 17 C -0.07 -1.22 3.16 -10.91 -0.03 -1.25 16 18 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 19 C -0.12 -2.19 6.31 31.72 0.20 -1.99 16 20 C -0.11 -1.46 6.91 31.93 0.22 -1.24 16 21 C -0.09 -1.22 6.58 31.57 0.21 -1.02 16 22 C -0.13 -1.89 2.26 -52.01 -0.12 -2.00 16 23 C -0.19 -2.85 9.63 30.48 0.29 -2.56 16 24 C -0.14 -1.28 10.23 30.48 0.31 -0.97 16 25 H 0.26 16.19 8.31 -92.70 -0.77 15.42 16 26 H 0.37 16.68 5.52 -92.71 -0.51 16.16 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 1.32 5.31 -2.38 -0.01 1.30 16 29 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.06 1.96 5.31 -2.39 -0.01 1.94 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.42 5.51 8.46 -92.71 -0.78 4.72 16 34 H 0.06 1.42 6.80 -2.39 -0.02 1.40 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.09 0.85 8.11 -2.39 -0.02 0.83 16 39 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.09 1.50 6.61 -2.39 -0.02 1.48 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -78.42 346.42 2.24 -76.18 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.35 Total: 27.63 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 4.48 Total: -10.35 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -3.75 Total: -120.06 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.90 Total: 47.98 kcal Total: -78.42 2.24 -76.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716310842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.488 kcal (2) G-P(sol) polarization free energy of solvation -78.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds