Wall clock time and date at job start Tue Mar 31 2020 00:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00247 * 2 1 4 4 H 1.48491 * 109.47408 * 269.99951 * 3 2 1 5 5 H 1.48507 * 109.47034 * 30.00282 * 3 2 1 6 6 H 1.48500 * 109.47239 * 149.99474 * 3 2 1 7 7 C 1.38814 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00336 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99606 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99397 * 180.02562 * 9 7 2 11 11 C 1.50710 * 109.46991 * 180.02562 * 10 9 7 12 12 C 1.30999 * 120.00155 * 124.99628 * 11 10 9 13 13 C 1.50698 * 119.99713 * 180.02562 * 12 11 10 14 14 N 1.46492 * 109.47113 * 125.00320 * 13 12 11 15 15 C 1.34776 * 120.00013 * 179.97438 * 14 13 12 16 16 O 1.21276 * 120.00159 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99940 * 179.97438 * 15 14 13 18 18 H 1.09003 * 110.05489 * 336.86059 * 17 15 14 19 19 C 1.54389 * 110.07060 * 215.37313 * 17 15 14 20 20 C 1.54922 * 104.22304 * 217.21822 * 19 17 15 21 21 C 1.54983 * 102.82049 * 37.72256 * 20 19 17 22 22 C 1.53481 * 110.07074 * 98.40536 * 17 15 14 23 23 C 1.52554 * 121.08968 * 335.14714 * 22 17 15 24 24 C 1.52569 * 121.05322 * 263.43214 * 22 17 15 25 25 H 0.97006 * 119.99698 * 0.02562 * 1 2 3 26 26 H 0.96994 * 120.00333 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47447 * 60.00295 * 10 9 7 28 28 H 1.08997 * 109.47465 * 299.99827 * 10 9 7 29 29 H 1.08000 * 119.99525 * 305.00119 * 11 10 9 30 30 H 1.07995 * 119.99464 * 0.02562 * 12 11 10 31 31 H 1.08995 * 109.47360 * 4.99842 * 13 12 11 32 32 H 1.09003 * 109.46796 * 245.00260 * 13 12 11 33 33 H 0.97004 * 120.00172 * 359.97438 * 14 13 12 34 34 H 1.08997 * 110.48087 * 335.90354 * 19 17 15 35 35 H 1.09000 * 110.47739 * 98.53506 * 19 17 15 36 36 H 1.09005 * 110.74159 * 156.05518 * 20 19 17 37 37 H 1.08994 * 110.74710 * 279.20411 * 20 19 17 38 38 H 1.09007 * 110.51444 * 81.07093 * 21 20 19 39 39 H 1.09008 * 110.51290 * 203.64142 * 21 20 19 40 40 H 1.09005 * 117.50572 * 357.03057 * 23 22 17 41 41 H 1.08998 * 117.51539 * 142.11385 * 23 22 17 42 42 H 1.09003 * 117.51436 * 217.94102 * 24 22 17 43 43 H 1.09003 * 117.50984 * 3.02464 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0786 -4.8023 -0.0035 12 6 1.1486 -5.7224 -0.9334 13 6 0.1689 -6.8674 -0.9355 14 7 -0.5056 -6.9305 -2.2344 15 6 -1.4304 -7.8828 -2.4679 16 8 -1.7044 -8.6872 -1.6027 17 6 -2.1247 -7.9473 -3.8039 18 1 -2.0890 -6.9729 -4.2912 19 6 -3.5910 -8.3932 -3.6180 20 6 -3.8716 -9.2994 -4.8428 21 6 -2.5325 -10.0587 -5.0227 22 6 -1.4590 -9.0067 -4.6928 23 6 -0.0049 -9.4147 -4.4778 24 6 -0.4031 -8.6187 -5.7234 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3881 -0.0023 27 1 2.6839 -3.7150 0.8889 28 1 2.6853 -3.7142 -0.8911 29 1 0.3191 -4.8646 0.7618 30 1 1.9084 -5.6602 -1.6984 31 1 -0.5703 -6.7147 -0.1492 32 1 0.7015 -7.8016 -0.7569 33 1 -0.2867 -6.2869 -2.9264 34 1 -3.7036 -8.9576 -2.6923 35 1 -4.2558 -7.5294 -3.6224 36 1 -4.6840 -9.9945 -4.6308 37 1 -4.0994 -8.6988 -5.7233 38 1 -2.4722 -10.8968 -4.3283 39 1 -2.4259 -10.4069 -6.0502 40 1 0.5557 -8.8909 -3.7035 41 1 0.2482 -10.4664 -4.6120 42 1 -0.4120 -9.1468 -6.6769 43 1 -0.1045 -7.5713 -5.7685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716310843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:21 Heat of formation + Delta-G solvation = 0.843513 kcal Electronic energy + Delta-G solvation = -20929.955802 eV Core-core repulsion = 17782.781222 eV Total energy + Delta-G solvation = -3147.174581 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.61443 -38.26721 -36.25934 -34.78853 -34.28843 -32.83518 -30.75719 -29.59214 -27.13249 -25.92590 -24.12687 -22.77049 -22.09708 -21.35384 -20.67594 -19.74915 -18.82348 -17.19898 -17.01851 -16.24689 -15.95385 -15.22554 -15.00958 -14.83422 -14.46698 -13.86146 -13.75389 -13.46351 -13.29122 -13.09732 -12.74944 -12.71131 -12.03967 -11.93082 -11.80914 -11.72521 -11.33604 -11.14308 -11.05023 -10.86061 -10.84612 -10.64607 -10.52718 -10.30965 -10.09382 -9.83033 -9.67217 -9.22858 -8.99639 -8.72313 -6.97222 -5.80151 -3.09849 2.26693 2.58301 3.22515 3.41461 3.46550 3.48451 3.61066 4.07588 4.31251 4.55185 4.56554 4.57520 4.77378 4.91827 4.96481 5.04765 5.17189 5.24989 5.33594 5.38266 5.46108 5.52929 5.56643 5.60099 5.62069 5.70207 5.75966 5.80737 5.83524 5.86186 5.91401 5.98977 6.11428 6.12167 6.36503 6.45662 6.55365 6.88742 7.12879 7.48935 7.66070 8.19878 8.38154 9.49455 10.05641 10.40977 11.42553 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025778 B = 0.002735 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.940518 B =10235.269332 C =10431.176193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.173 3.827 11 C -0.107 4.107 12 C -0.202 4.202 13 C 0.155 3.845 14 N -0.724 5.724 15 C 0.521 3.479 16 O -0.541 6.541 17 C -0.078 4.078 18 H 0.092 0.908 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.086 4.086 22 C -0.117 4.117 23 C -0.170 4.170 24 C -0.165 4.165 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.031 0.969 28 H 0.025 0.975 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.402 0.598 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 -20.484 -11.684 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.046 3.954 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.032 3.968 14 N -0.376 5.376 15 C 0.307 3.693 16 O -0.418 6.418 17 C -0.099 4.099 18 H 0.110 0.890 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.207 4.207 24 C -0.202 4.202 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.237 0.763 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.307 -20.932 -11.020 24.044 hybrid contribution 0.407 1.393 -0.287 1.479 sum -3.899 -19.539 -11.306 22.909 Atomic orbital electron populations 1.69670 1.05147 1.25753 1.57509 1.24770 0.95565 0.97776 1.02845 0.86157 0.78648 0.83643 0.77543 1.21658 1.21696 1.20700 1.19246 0.91074 0.84016 1.43035 0.91071 1.42301 1.05950 0.99566 1.89596 1.19825 0.92609 0.84583 0.98422 1.23338 0.98261 0.94000 0.97001 1.22689 1.00968 0.97083 1.01354 1.20303 0.93889 0.97496 0.85124 1.46180 1.41303 1.33146 1.16937 1.20487 0.79210 0.80327 0.89233 1.90665 1.64085 1.40387 1.46660 1.21435 0.96275 0.99657 0.92560 0.88968 1.22365 0.92711 0.99991 0.99909 1.22445 0.96990 0.98326 0.97969 1.21867 0.92834 0.96514 1.01119 1.21516 0.90683 0.98525 1.01029 1.23000 0.96423 1.01068 1.00199 1.23066 1.02060 1.01172 0.93897 0.93437 0.78136 0.95139 0.95701 0.87287 0.86814 0.91281 0.91250 0.76343 0.89605 0.91037 0.91150 0.91255 0.90931 0.91451 0.88611 0.88562 0.88454 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.64 5.60 -61.08 -0.34 -18.98 16 10 C 0.17 3.46 6.70 -5.19 -0.03 3.42 16 11 C -0.11 -1.74 9.24 -36.02 -0.33 -2.07 16 12 C -0.20 -2.75 9.24 -36.03 -0.33 -3.08 16 13 C 0.15 1.99 6.11 -5.20 -0.03 1.96 16 14 N -0.72 -8.56 5.40 -61.48 -0.33 -8.89 16 15 C 0.52 6.66 5.51 -10.98 -0.06 6.60 16 16 O -0.54 -8.83 15.85 5.56 0.09 -8.74 16 17 C -0.08 -0.78 3.16 -90.79 -0.29 -1.07 16 18 H 0.09 0.80 8.11 -51.93 -0.42 0.38 16 19 C -0.11 -1.07 6.33 -24.99 -0.16 -1.23 16 20 C -0.12 -0.91 6.91 -24.67 -0.17 -1.08 16 21 C -0.09 -0.69 6.58 -25.23 -0.17 -0.86 16 22 C -0.12 -1.05 2.26 -154.25 -0.35 -1.40 16 23 C -0.17 -1.55 9.63 -26.91 -0.26 -1.81 16 24 C -0.17 -1.27 10.24 -26.91 -0.28 -1.54 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.39 10.35 7.66 -40.82 -0.31 10.03 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 29 H 0.11 1.76 7.84 -52.49 -0.41 1.34 16 30 H 0.11 1.46 7.84 -52.49 -0.41 1.05 16 31 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.40 4.09 8.44 -40.82 -0.34 3.74 16 34 H 0.09 0.99 6.97 -51.93 -0.36 0.63 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.45 8.11 -51.92 -0.42 0.03 16 40 H 0.10 0.98 7.18 -51.93 -0.37 0.60 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -32.21 355.31 -9.45 -41.66 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.22 Total: 9.43 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -2.70 Total: -9.61 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.05 Total: -55.40 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.21 -9.45 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716310843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.506 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds