Wall clock time and date at job start Mon Mar 30 2020 23:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47625 * 274.81449 * 3 2 1 5 5 H 1.48504 * 109.47193 * 34.81584 * 3 2 1 6 6 H 1.48507 * 109.46868 * 154.81373 * 3 2 1 7 7 C 1.38809 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00136 * 187.60662 * 7 2 1 9 9 N 1.36942 * 120.00024 * 7.60624 * 7 2 1 10 10 C 1.47586 * 134.48907 * 7.05177 * 9 7 2 11 11 C 1.53949 * 86.11120 * 155.36463 * 10 9 7 12 12 C 1.47578 * 134.49275 * 187.06449 * 9 7 2 13 13 H 1.08997 * 113.87453 * 90.31894 * 12 9 7 14 14 C 1.52997 * 113.76966 * 318.93393 * 12 9 7 15 15 N 1.46497 * 109.47243 * 78.50376 * 14 12 9 16 16 C 1.34773 * 120.00407 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99750 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00318 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.46926 * 180.02562 * 18 16 15 20 20 C 1.29442 * 117.96040 * 95.02790 * 19 18 16 21 21 C 1.50065 * 124.07824 * 180.46960 * 20 19 18 22 22 C 1.52977 * 110.28548 * 342.96956 * 21 20 19 23 23 C 1.53399 * 108.45849 * 49.13751 * 22 21 20 24 24 C 1.50070 * 117.96225 * 274.99905 * 19 18 16 25 25 H 0.96995 * 119.99548 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.76637 * 41.06380 * 10 9 7 27 27 H 1.09001 * 113.76920 * 269.66562 * 10 9 7 28 28 H 1.08995 * 113.74375 * 269.26199 * 11 10 9 29 29 H 1.09003 * 113.83336 * 137.96993 * 11 10 9 30 30 H 1.09008 * 109.47261 * 318.51016 * 14 12 9 31 31 H 1.08998 * 109.47399 * 198.51401 * 14 12 9 32 32 H 0.97002 * 119.99765 * 0.02562 * 15 14 12 33 33 H 1.08999 * 109.46728 * 60.00887 * 18 16 15 34 34 H 1.08994 * 109.47088 * 300.00443 * 18 16 15 35 35 H 1.08000 * 117.96263 * 0.44045 * 20 19 18 36 36 H 1.08998 * 109.35875 * 103.04491 * 21 20 19 37 37 H 1.08997 * 109.35683 * 222.77557 * 21 20 19 38 38 H 1.08997 * 109.47505 * 289.54199 * 22 21 20 39 39 H 1.08999 * 109.79622 * 168.91624 * 22 21 20 40 40 H 1.08999 * 109.64685 * 173.07224 * 23 22 21 41 41 H 1.09007 * 109.63896 * 52.65691 * 23 22 21 42 42 H 1.08997 * 109.35693 * 42.68995 * 24 19 18 43 43 H 1.08997 * 109.24992 * 283.03118 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3960 2.1053 -1.3951 5 1 1.5022 2.6212 0.7994 6 1 3.5950 1.4129 0.5959 7 6 2.0103 -1.2021 -0.0005 8 1 3.0831 -1.2062 0.1233 9 7 1.3347 -2.3828 -0.1580 10 6 -0.0617 -2.7412 -0.4740 11 6 0.5098 -4.0673 -1.0077 12 6 1.7104 -3.8078 -0.0798 13 1 1.5984 -4.2395 0.9148 14 6 3.0638 -4.1247 -0.7191 15 7 4.1394 -3.7338 0.1953 16 6 5.4263 -3.9210 -0.1587 17 8 5.6938 -4.4127 -1.2346 18 6 6.5328 -3.5195 0.7823 19 6 7.8658 -3.8316 0.1524 20 6 8.4710 -2.8837 -0.4886 21 6 9.7957 -3.0453 -1.1750 22 6 10.5057 -4.3021 -0.6684 23 6 9.5158 -5.4728 -0.7190 24 6 8.4093 -5.2217 0.3078 25 1 -0.4849 0.8400 0.0004 26 1 -0.5123 -2.1153 -1.2443 27 1 -0.6950 -2.8579 0.4054 28 1 0.7611 -4.0417 -2.0680 29 1 -0.0775 -4.9430 -0.7312 30 1 3.1626 -3.5720 -1.6535 31 1 3.1288 -5.1939 -0.9209 32 1 3.9254 -3.3409 1.0560 33 1 6.4337 -4.0722 1.7165 34 1 6.4680 -2.4503 0.9840 35 1 7.9927 -1.9164 -0.5324 36 1 9.6374 -3.1321 -2.2499 37 1 10.4173 -2.1736 -0.9704 38 1 10.8346 -4.1446 0.3588 39 1 11.3650 -4.5213 -1.3021 40 1 10.0339 -6.4014 -0.4795 41 1 9.0813 -5.5424 -1.7163 42 1 7.6059 -5.9427 0.1568 43 1 8.8155 -5.3385 1.3125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716646482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:40 Heat of formation + Delta-G solvation = 9.527014 kcal Electronic energy + Delta-G solvation = -21736.595134 eV Core-core repulsion = 18589.797099 eV Total energy + Delta-G solvation = -3146.798036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.70147 -38.38178 -37.67906 -33.97441 -32.86272 -32.18871 -30.77009 -28.63444 -27.87984 -26.44661 -23.37951 -23.31093 -22.36893 -21.56952 -20.11231 -19.08839 -17.57164 -17.07578 -16.28555 -16.06352 -15.40273 -15.14599 -14.80928 -14.43024 -14.03986 -13.81308 -13.66901 -13.52630 -13.07427 -12.94545 -12.58040 -12.24289 -12.16880 -11.94835 -11.54085 -11.37638 -11.15683 -11.04045 -10.85570 -10.77152 -10.53232 -10.50555 -10.25468 -10.06443 -9.76547 -9.63719 -9.35073 -8.77881 -8.67812 -8.53097 -6.91040 -5.80082 -3.10806 2.25791 3.02231 3.36572 3.41655 3.43850 3.71827 4.42200 4.58455 4.66368 4.84631 5.07049 5.10919 5.18819 5.27362 5.35148 5.39335 5.42768 5.54237 5.56367 5.60506 5.69672 5.73421 5.76913 5.87255 5.90243 5.91729 6.02025 6.09809 6.14189 6.26979 6.31404 6.39465 6.60734 6.68103 6.73842 6.93755 7.06077 7.20783 7.39742 7.53982 7.94927 7.96216 8.63276 9.02360 9.69192 10.58859 11.37951 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.004269 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.445804 B = 6557.177606 C = 7701.559012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.166 3.834 11 C -0.157 4.157 12 C 0.125 3.875 13 H 0.049 0.951 14 C 0.125 3.875 15 N -0.717 5.717 16 C 0.511 3.489 17 O -0.546 6.546 18 C -0.113 4.113 19 C -0.097 4.097 20 C -0.151 4.151 21 C -0.086 4.086 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.078 4.078 25 H 0.253 0.747 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.402 0.598 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.684 -9.978 1.897 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.040 3.960 11 C -0.196 4.196 12 C 0.017 3.983 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.367 5.367 16 C 0.297 3.703 17 O -0.424 6.424 18 C -0.152 4.152 19 C -0.097 4.097 20 C -0.169 4.169 21 C -0.123 4.123 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.115 4.115 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.236 0.764 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.870 -9.968 1.153 17.939 hybrid contribution 0.105 1.351 0.603 1.483 sum 14.975 -8.617 1.755 17.366 Atomic orbital electron populations 1.69845 1.04999 1.25318 1.56346 1.24790 0.95575 0.97524 1.02427 0.86190 0.78619 0.83851 0.77597 1.21613 1.21750 1.20686 1.18964 0.90548 0.82123 1.43209 0.90349 1.46169 1.06159 0.98586 1.81850 1.22064 0.87764 0.89453 0.96681 1.23770 0.97340 0.99011 0.99461 1.22491 0.91742 0.87806 0.96220 0.93415 1.21710 0.85970 0.98650 0.93686 1.46009 1.05515 1.63485 1.21724 1.20489 0.83590 0.78591 0.87626 1.90666 1.83626 1.44474 1.23591 1.20870 0.91980 1.03572 0.98824 1.20264 0.94263 0.95491 0.99687 1.21862 0.97163 0.98969 0.98949 1.20379 0.94136 0.97905 0.99922 1.21592 0.97742 0.95134 1.01217 1.21566 0.96275 0.97685 1.00044 1.20322 0.98075 0.94161 0.98904 0.93682 0.92164 0.95031 0.90569 0.92718 0.91204 0.92354 0.76351 0.88698 0.88466 0.88032 0.90971 0.91389 0.91955 0.91951 0.92017 0.91480 0.90941 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 11.76 55.49 0.65 -26.30 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.00 29.56 -169.99 -5.02 16.97 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.22 -5.92 10.49 -15.06 -0.16 -6.08 16 8 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 9 N -0.60 -14.63 3.56 -170.77 -0.61 -15.24 16 10 C 0.17 3.80 7.31 -2.97 -0.02 3.77 16 11 C -0.16 -2.85 7.86 -25.80 -0.20 -3.06 16 12 C 0.12 2.40 4.33 -66.86 -0.29 2.11 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.12 2.26 5.54 -4.05 -0.02 2.24 16 15 N -0.72 -12.04 5.51 -60.30 -0.33 -12.37 16 16 C 0.51 8.52 7.82 -10.99 -0.09 8.44 16 17 O -0.55 -10.91 16.03 5.55 0.09 -10.82 16 18 C -0.11 -1.45 5.71 -29.03 -0.17 -1.62 16 19 C -0.10 -1.24 4.33 -100.94 -0.44 -1.68 16 20 C -0.15 -1.93 9.37 -35.90 -0.34 -2.27 16 21 C -0.09 -0.92 6.11 -28.20 -0.17 -1.09 16 22 C -0.12 -1.12 6.02 -26.54 -0.16 -1.28 16 23 C -0.12 -1.22 6.00 -26.51 -0.16 -1.38 16 24 C -0.08 -0.88 5.81 -28.17 -0.16 -1.04 16 25 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.06 1.52 7.69 -51.93 -0.40 1.12 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.40 6.36 8.47 -40.82 -0.35 6.02 16 33 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 34 H 0.10 1.19 7.79 -51.93 -0.40 0.79 16 35 H 0.10 1.33 7.74 -52.49 -0.41 0.92 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.79 8.13 -51.92 -0.42 0.37 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -31.78 349.78 -9.86 -41.64 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.44 Total: 4.05 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.47 Total: -3.19 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.29 Total: -53.92 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.78 -9.86 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716646482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.165 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds