Wall clock time and date at job start Mon Mar 30 2020 23:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47625 * 274.81449 * 3 2 1 5 5 H 1.48504 * 109.47193 * 34.81584 * 3 2 1 6 6 H 1.48507 * 109.46868 * 154.81373 * 3 2 1 7 7 C 1.38809 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00136 * 187.60662 * 7 2 1 9 9 N 1.36942 * 120.00024 * 7.60624 * 7 2 1 10 10 C 1.47586 * 134.48907 * 7.05177 * 9 7 2 11 11 C 1.53949 * 86.11120 * 155.36463 * 10 9 7 12 12 C 1.47578 * 134.49275 * 187.06449 * 9 7 2 13 13 H 1.08997 * 113.87453 * 90.31894 * 12 9 7 14 14 C 1.52997 * 113.76966 * 318.93393 * 12 9 7 15 15 N 1.46497 * 109.47243 * 78.50376 * 14 12 9 16 16 C 1.34773 * 120.00407 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99750 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00318 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.46926 * 180.02562 * 18 16 15 20 20 C 1.29442 * 117.96040 * 95.02790 * 19 18 16 21 21 C 1.50065 * 124.07824 * 180.46960 * 20 19 18 22 22 C 1.52977 * 110.28548 * 342.96956 * 21 20 19 23 23 C 1.53399 * 108.45849 * 49.13751 * 22 21 20 24 24 C 1.50070 * 117.96225 * 274.99905 * 19 18 16 25 25 H 0.96995 * 119.99548 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.76637 * 41.06380 * 10 9 7 27 27 H 1.09001 * 113.76920 * 269.66562 * 10 9 7 28 28 H 1.08995 * 113.74375 * 269.26199 * 11 10 9 29 29 H 1.09003 * 113.83336 * 137.96993 * 11 10 9 30 30 H 1.09008 * 109.47261 * 318.51016 * 14 12 9 31 31 H 1.08998 * 109.47399 * 198.51401 * 14 12 9 32 32 H 0.97002 * 119.99765 * 0.02562 * 15 14 12 33 33 H 1.08999 * 109.46728 * 60.00887 * 18 16 15 34 34 H 1.08994 * 109.47088 * 300.00443 * 18 16 15 35 35 H 1.08000 * 117.96263 * 0.44045 * 20 19 18 36 36 H 1.08998 * 109.35875 * 103.04491 * 21 20 19 37 37 H 1.08997 * 109.35683 * 222.77557 * 21 20 19 38 38 H 1.08997 * 109.47505 * 289.54199 * 22 21 20 39 39 H 1.08999 * 109.79622 * 168.91624 * 22 21 20 40 40 H 1.08999 * 109.64685 * 173.07224 * 23 22 21 41 41 H 1.09007 * 109.63896 * 52.65691 * 23 22 21 42 42 H 1.08997 * 109.35693 * 42.68995 * 24 19 18 43 43 H 1.08997 * 109.24992 * 283.03118 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3960 2.1053 -1.3951 5 1 1.5022 2.6212 0.7994 6 1 3.5950 1.4129 0.5959 7 6 2.0103 -1.2021 -0.0005 8 1 3.0831 -1.2062 0.1233 9 7 1.3347 -2.3828 -0.1580 10 6 -0.0617 -2.7412 -0.4740 11 6 0.5098 -4.0673 -1.0077 12 6 1.7104 -3.8078 -0.0798 13 1 1.5984 -4.2395 0.9148 14 6 3.0638 -4.1247 -0.7191 15 7 4.1394 -3.7338 0.1953 16 6 5.4263 -3.9210 -0.1587 17 8 5.6938 -4.4127 -1.2346 18 6 6.5328 -3.5195 0.7823 19 6 7.8658 -3.8316 0.1524 20 6 8.4710 -2.8837 -0.4886 21 6 9.7957 -3.0453 -1.1750 22 6 10.5057 -4.3021 -0.6684 23 6 9.5158 -5.4728 -0.7190 24 6 8.4093 -5.2217 0.3078 25 1 -0.4849 0.8400 0.0004 26 1 -0.5123 -2.1153 -1.2443 27 1 -0.6950 -2.8579 0.4054 28 1 0.7611 -4.0417 -2.0680 29 1 -0.0775 -4.9430 -0.7312 30 1 3.1626 -3.5720 -1.6535 31 1 3.1288 -5.1939 -0.9209 32 1 3.9254 -3.3409 1.0560 33 1 6.4337 -4.0722 1.7165 34 1 6.4680 -2.4503 0.9840 35 1 7.9927 -1.9164 -0.5324 36 1 9.6374 -3.1321 -2.2499 37 1 10.4173 -2.1736 -0.9704 38 1 10.8346 -4.1446 0.3588 39 1 11.3650 -4.5213 -1.3021 40 1 10.0339 -6.4014 -0.4795 41 1 9.0813 -5.5424 -1.7163 42 1 7.6059 -5.9427 0.1568 43 1 8.8155 -5.3385 1.3125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716646482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:39 Heat of formation + Delta-G solvation = -9.589145 kcal Electronic energy + Delta-G solvation = -21737.424073 eV Core-core repulsion = 18589.797099 eV Total energy + Delta-G solvation = -3147.626975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97644 -39.77181 -38.95169 -35.44607 -34.22493 -33.79989 -31.62056 -30.07386 -29.70035 -27.66745 -25.30001 -24.21614 -23.78454 -22.59780 -21.46101 -20.78088 -18.75543 -18.47618 -17.79463 -17.25139 -17.13069 -16.37557 -16.19164 -15.77065 -15.52039 -15.15003 -14.93077 -14.67073 -14.35302 -14.34048 -13.60440 -13.49602 -13.26316 -13.10149 -13.00534 -12.98097 -12.71173 -12.64897 -12.53269 -12.26331 -11.88518 -11.63891 -11.52523 -11.36174 -11.32808 -11.10385 -10.84135 -10.78463 -9.97912 -9.65553 -8.89491 -7.89722 -5.19589 1.26222 1.42387 1.44995 1.52019 1.71092 2.39362 2.49630 3.33192 3.38062 3.66509 3.80347 3.92719 4.03595 4.08045 4.17719 4.28743 4.35102 4.37234 4.47235 4.54758 4.65042 4.70202 4.71791 4.75328 4.75970 4.87325 5.00442 5.04774 5.04941 5.09784 5.11305 5.20155 5.31125 5.32881 5.48177 5.50677 5.57945 5.73988 5.75137 5.95572 6.11592 6.62884 6.94606 7.31232 7.64576 8.60383 9.28707 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.004269 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.445804 B = 6557.177606 C = 7701.559012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.296 1.296 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.214 4.214 8 H 0.085 0.915 9 N -0.628 5.628 10 C 0.157 3.843 11 C -0.131 4.131 12 C 0.132 3.868 13 H 0.069 0.931 14 C 0.134 3.866 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.582 6.582 18 C -0.107 4.107 19 C -0.108 4.108 20 C -0.163 4.163 21 C -0.089 4.089 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.078 4.078 25 H 0.246 0.754 26 H 0.026 0.974 27 H 0.024 0.976 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.408 0.592 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.647 -11.314 2.912 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.794 3.206 4 H -0.224 1.224 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.343 4.343 8 H 0.102 0.898 9 N -0.355 5.355 10 C 0.032 3.968 11 C -0.170 4.170 12 C 0.026 3.974 13 H 0.087 0.913 14 C 0.009 3.991 15 N -0.366 5.366 16 C 0.297 3.703 17 O -0.463 6.463 18 C -0.147 4.147 19 C -0.109 4.109 20 C -0.181 4.181 21 C -0.126 4.126 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.244 0.756 33 H 0.142 0.858 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.858 -11.333 2.188 20.431 hybrid contribution -0.509 1.697 0.266 1.792 sum 16.349 -9.636 2.454 19.136 Atomic orbital electron populations 1.70009 1.06342 1.25285 1.58734 1.25524 0.96342 1.00572 1.03741 0.85253 0.78156 0.80215 0.76931 1.22366 1.22282 1.18928 1.19316 0.91059 0.83296 1.40628 0.89762 1.46521 1.06996 1.00036 1.81931 1.22037 0.87305 0.91713 0.95760 1.23568 0.96332 0.97756 0.99320 1.22652 0.92669 0.84704 0.97389 0.91349 1.21479 0.85923 0.99234 0.92474 1.46013 1.05494 1.63439 1.21690 1.21138 0.84034 0.77525 0.87601 1.90651 1.84107 1.46166 1.25350 1.20913 0.90498 1.04312 0.98971 1.20485 0.94218 0.96340 0.99834 1.22071 0.98292 0.98681 0.99069 1.20436 0.93528 0.99404 0.99223 1.21586 0.97719 0.93823 1.02083 1.21578 0.96346 0.99128 0.98592 1.20360 0.97993 0.92726 1.00390 0.94549 0.95522 0.95851 0.90277 0.88699 0.94317 0.90441 0.75643 0.85811 0.87781 0.89047 0.91755 0.89974 0.90955 0.90406 0.90127 0.93629 0.92314 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.46 11.76 21.65 0.25 -57.21 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 3 Si 0.96 45.72 29.56 68.60 2.03 47.75 16 4 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.21 -11.47 10.49 84.03 0.88 -10.59 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 9 N -0.63 -30.35 3.56 -694.18 -2.47 -32.82 16 10 C 0.16 7.23 7.31 86.48 0.63 7.86 16 11 C -0.13 -4.50 7.86 31.26 0.25 -4.25 16 12 C 0.13 4.81 4.33 45.09 0.20 5.00 16 13 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 14 C 0.13 4.66 5.54 86.38 0.48 5.14 16 15 N -0.72 -22.88 5.51 -463.07 -2.55 -25.44 16 16 C 0.51 16.34 7.82 87.66 0.69 17.03 16 17 O -0.58 -23.02 16.03 -3.04 -0.05 -23.07 16 18 C -0.11 -2.56 5.71 29.10 0.17 -2.40 16 19 C -0.11 -2.62 4.33 -15.09 -0.07 -2.69 16 20 C -0.16 -3.99 9.37 27.04 0.25 -3.74 16 21 C -0.09 -1.76 6.11 29.64 0.18 -1.58 16 22 C -0.11 -1.88 6.02 30.72 0.18 -1.69 16 23 C -0.12 -2.24 6.00 30.74 0.18 -2.06 16 24 C -0.08 -1.61 5.81 29.66 0.17 -1.44 16 25 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.03 1.38 7.69 -2.39 -0.02 1.36 16 27 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.41 12.09 8.47 -92.71 -0.79 11.31 16 33 H 0.12 2.22 8.11 -2.39 -0.02 2.20 16 34 H 0.10 2.35 7.79 -2.39 -0.02 2.33 16 35 H 0.09 2.35 7.74 -2.91 -0.02 2.33 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.04 1.04 8.13 -2.38 -0.02 1.02 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -69.70 349.78 2.06 -67.64 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.19 Total: 21.96 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 4.66 Total: 1.19 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -4.77 Total: -115.47 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.05 Total: -23.07 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.70 2.06 -67.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716646482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.050 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds