Wall clock time and date at job start Tue Mar 31 2020 00:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48496 * 109.47363 * 240.00362 * 3 2 1 5 5 H 1.48503 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47305 * 119.99756 * 3 2 1 7 7 C 1.38814 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99657 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46872 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.54096 * 56.16043 * 11 10 9 13 13 C 1.54882 * 110.48812 * 293.54860 * 11 10 9 14 14 C 1.54897 * 102.74839 * 203.38054 * 13 11 10 15 15 C 1.54268 * 104.19359 * 37.94171 * 14 13 11 16 16 H 1.08998 * 110.02839 * 95.67999 * 15 14 13 17 17 N 1.46504 * 110.02713 * 217.10303 * 15 14 13 18 18 C 1.34769 * 120.00109 * 273.54634 * 17 15 14 19 19 O 1.21614 * 120.00180 * 0.02562 * 18 17 15 20 20 C 1.47103 * 120.00094 * 180.02562 * 18 17 15 21 21 C 1.32990 * 120.00457 * 180.02562 * 20 18 17 22 22 C 1.51407 * 136.31425 * 359.62846 * 21 20 18 23 23 C 1.53378 * 87.51736 * 206.05523 * 22 21 20 24 24 C 1.51403 * 136.32040 * 179.97438 * 21 20 18 25 25 C 1.53876 * 106.59992 * 336.38989 * 15 14 13 26 26 H 0.97000 * 120.00029 * 359.97438 * 1 2 3 27 27 H 0.96993 * 119.99934 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.46690 * 60.00325 * 10 9 7 29 29 H 1.08997 * 109.46868 * 300.00559 * 10 9 7 30 30 H 1.08994 * 110.76048 * 85.06728 * 13 11 10 31 31 H 1.09004 * 110.75771 * 321.69122 * 13 11 10 32 32 H 1.08999 * 110.48266 * 156.62203 * 14 13 11 33 33 H 1.08999 * 110.48462 * 279.12630 * 14 13 11 34 34 H 0.97002 * 119.99734 * 93.55094 * 17 15 14 35 35 H 1.08002 * 119.99644 * 359.97438 * 20 18 17 36 36 H 1.09007 * 113.56015 * 320.63955 * 22 21 20 37 37 H 1.09001 * 113.56268 * 91.37136 * 22 21 20 38 38 H 1.09001 * 113.96699 * 220.28809 * 23 22 21 39 39 H 1.09006 * 113.59706 * 88.79527 * 23 22 21 40 40 H 1.08998 * 113.56371 * 268.62952 * 24 21 20 41 41 H 1.09001 * 113.55768 * 39.36460 * 24 21 20 42 42 H 1.08994 * 110.02975 * 119.28475 * 25 15 14 43 43 H 1.08998 * 110.02933 * 240.72065 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3837 -4.7408 -0.8492 13 6 0.2706 -4.8553 1.3285 14 6 -0.1834 -6.3337 1.4161 15 6 1.0183 -7.1315 0.8690 16 1 1.6450 -7.4740 1.6923 17 7 0.5459 -8.2768 0.0870 18 6 0.2619 -9.4417 0.7022 19 8 0.3972 -9.5421 1.9066 20 6 -0.2118 -10.5919 -0.0831 21 6 -0.4927 -11.7413 0.5240 22 6 -0.4561 -12.2674 1.9433 23 6 -0.2785 -13.6697 1.3480 24 6 -0.9857 -13.1097 0.1037 25 6 1.8114 -6.1689 -0.0322 26 1 -0.4850 0.8400 0.0004 27 1 0.3557 -2.3880 -0.0005 28 1 2.6848 -3.7144 0.8895 29 1 2.6849 -3.7144 -0.8905 30 1 -0.5906 -4.1889 1.2826 31 1 0.9146 -4.5986 2.1697 32 1 -0.3854 -6.6100 2.4510 33 1 -1.0665 -6.4987 0.7989 34 1 0.4377 -8.1966 -0.8737 35 1 -0.3324 -10.5025 -1.1526 36 1 0.4079 -11.9248 2.5128 37 1 -1.3957 -12.1378 2.4804 38 1 -0.8444 -14.4449 1.8645 39 1 0.7630 -13.9427 1.1774 40 1 -2.0704 -13.2111 0.1365 41 1 -0.5560 -13.4581 -0.8355 42 1 2.8230 -6.0442 0.3538 43 1 1.8448 -6.5538 -1.0514 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725628339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:45 Heat of formation + Delta-G solvation = -21.633833 kcal Electronic energy + Delta-G solvation = -20875.512301 eV Core-core repulsion = 17727.363030 eV Total energy + Delta-G solvation = -3148.149271 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07253 -39.71371 -38.78150 -36.43386 -34.72265 -33.00610 -31.76317 -30.15752 -28.87870 -26.67024 -26.23305 -24.31519 -23.91356 -21.95146 -21.35103 -20.96271 -19.21173 -19.01796 -18.07879 -17.24055 -16.75232 -16.43841 -16.08787 -15.94563 -15.58069 -15.28648 -15.12588 -14.92877 -14.54476 -14.35497 -13.53064 -13.33230 -13.15751 -12.92939 -12.89368 -12.75826 -12.63093 -12.39817 -12.20166 -12.09158 -11.90836 -11.77414 -11.62881 -11.54550 -11.49653 -11.43137 -10.89807 -10.66330 -10.27519 -9.87971 -8.97571 -7.94146 -5.22433 0.40335 1.47099 1.50413 1.56479 2.24223 2.34710 2.56901 3.38882 3.41447 3.58172 3.60012 3.63312 3.84492 3.89448 4.17094 4.22289 4.27317 4.43488 4.50340 4.52358 4.61325 4.62560 4.70965 4.75252 4.77057 4.85994 4.87778 4.95379 5.04898 5.05600 5.08494 5.15352 5.23874 5.28091 5.36233 5.37528 5.48107 5.54964 5.63779 5.70042 6.28445 6.66698 7.33162 7.34581 8.12314 8.35400 9.29297 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.066304 B = 0.002426 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.192916 B =11536.871635 C =11591.358784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.157 3.843 11 C -0.088 4.088 12 H 0.074 0.926 13 C -0.109 4.109 14 C -0.122 4.122 15 C 0.150 3.850 16 H 0.075 0.925 17 N -0.708 5.708 18 C 0.541 3.459 19 O -0.588 6.588 20 C -0.210 4.210 21 C -0.072 4.072 22 C -0.120 4.120 23 C -0.135 4.135 24 C -0.096 4.096 25 C -0.109 4.109 26 H 0.251 0.749 27 H 0.374 0.626 28 H 0.018 0.982 29 H 0.022 0.978 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.415 0.585 35 H 0.163 0.837 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 -28.461 -2.392 28.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.031 3.969 11 C -0.107 4.107 12 H 0.093 0.907 13 C -0.147 4.147 14 C -0.161 4.161 15 C 0.044 3.956 16 H 0.093 0.907 17 N -0.359 5.359 18 C 0.332 3.668 19 O -0.470 6.470 20 C -0.231 4.231 21 C -0.074 4.074 22 C -0.157 4.157 23 C -0.172 4.172 24 C -0.132 4.132 25 C -0.147 4.147 26 H 0.060 0.940 27 H 0.206 0.794 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.253 0.747 35 H 0.180 0.820 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.080 -28.423 -1.561 28.487 hybrid contribution -0.022 1.567 -0.140 1.574 sum -1.102 -26.856 -1.701 26.932 Atomic orbital electron populations 1.69812 1.06587 1.26111 1.59560 1.25587 0.96446 1.01154 1.03826 0.85197 0.77183 0.79107 0.78187 1.20280 1.22142 1.20507 1.19623 0.91502 0.85520 1.41159 0.90756 1.42561 1.05672 1.01163 1.89318 1.20873 0.93793 0.84752 0.97467 1.22020 0.96841 0.93859 0.97944 0.90741 1.22368 0.99350 0.95627 0.97349 1.22674 0.98216 0.94279 1.00952 1.21449 0.94767 0.85270 0.94074 0.90712 1.46012 1.67127 1.10847 1.11961 1.19006 0.76731 0.83822 0.87272 1.90751 1.55141 1.84625 1.16522 1.21739 1.09071 0.91034 1.01209 1.23919 0.90693 0.94016 0.98811 1.22330 1.02647 0.96243 0.94518 1.22733 1.01717 0.95743 0.96999 1.22382 1.02052 0.89148 0.99642 1.22320 0.99039 0.92605 1.00757 0.94026 0.79386 0.96432 0.96010 0.92914 0.92418 0.92396 0.90915 0.74748 0.81998 0.92289 0.88386 0.88722 0.89662 0.86542 0.88721 0.90171 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -38.39 5.44 -343.46 -1.87 -40.26 16 10 C 0.16 6.27 5.54 86.38 0.48 6.75 16 11 C -0.09 -2.72 2.93 -9.72 -0.03 -2.74 16 12 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 13 C -0.11 -3.50 6.01 31.89 0.19 -3.31 16 14 C -0.12 -3.34 6.52 31.67 0.21 -3.14 16 15 C 0.15 3.64 3.22 45.72 0.15 3.79 16 16 H 0.07 2.08 7.61 -2.39 -0.02 2.06 16 17 N -0.71 -14.28 5.05 -442.69 -2.23 -16.51 16 18 C 0.54 12.96 7.75 86.57 0.67 13.63 16 19 O -0.59 -18.99 14.83 -4.07 -0.06 -19.05 16 20 C -0.21 -3.59 10.03 23.43 0.23 -3.36 16 21 C -0.07 -1.18 6.93 -17.17 -0.12 -1.30 16 22 C -0.12 -2.10 6.99 30.06 0.21 -1.89 16 23 C -0.13 -1.42 8.17 30.95 0.25 -1.17 16 24 C -0.10 -0.88 7.96 30.16 0.24 -0.64 16 25 C -0.11 -2.53 6.14 31.32 0.19 -2.33 16 26 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.37 20.46 7.52 -92.71 -0.70 19.76 16 28 H 0.02 0.72 8.10 -2.39 -0.02 0.70 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.98 8.02 -2.38 -0.02 1.96 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 34 H 0.42 5.75 8.28 -92.71 -0.77 4.98 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.06 1.34 7.49 -2.38 -0.02 1.33 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 1.85 7.84 -2.39 -0.02 1.84 16 43 H 0.09 1.73 7.60 -2.39 -0.02 1.71 16 Total: -1.00 -71.94 350.92 1.66 -70.28 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.47 Total: 29.64 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 3.98 Total: -12.97 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -3.82 Total: -116.65 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.06 Total: -19.05 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -71.94 1.66 -70.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725628339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.641 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds