Wall clock time and date at job start Tue Mar 31 2020 00:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99630 * 2 1 4 4 H 1.48503 * 109.46808 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46986 * 299.99682 * 3 2 1 6 6 H 1.48497 * 109.47195 * 59.99774 * 3 2 1 7 7 C 1.38812 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00129 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99617 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99973 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47575 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.43291 * 52.46077 * 11 10 9 13 13 C 1.55238 * 110.58012 * 289.87827 * 11 10 9 14 14 C 1.54894 * 102.58338 * 203.33342 * 13 11 10 15 15 C 1.54266 * 104.31305 * 37.93170 * 14 13 11 16 16 H 1.08995 * 110.03255 * 217.03136 * 15 14 13 17 17 N 1.46500 * 110.03070 * 95.65382 * 15 14 13 18 18 C 1.34780 * 120.00093 * 86.45671 * 17 15 14 19 19 O 1.21617 * 119.99848 * 359.97438 * 18 17 15 20 20 C 1.47103 * 120.00381 * 180.02562 * 18 17 15 21 21 C 1.32987 * 120.00258 * 179.97438 * 20 18 17 22 22 C 1.51409 * 136.31541 * 359.63240 * 21 20 18 23 23 C 1.53375 * 87.51724 * 206.05442 * 22 21 20 24 24 C 1.51399 * 136.31956 * 179.97438 * 21 20 18 25 25 C 1.53869 * 106.60031 * 336.32486 * 15 14 13 26 26 H 0.96996 * 120.00483 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00555 * 0.02562 * 9 7 2 28 28 H 1.09008 * 109.47079 * 60.00110 * 10 9 7 29 29 H 1.09000 * 109.47660 * 300.00470 * 10 9 7 30 30 H 1.08996 * 110.89448 * 85.04906 * 13 11 10 31 31 H 1.08993 * 110.76342 * 321.56571 * 13 11 10 32 32 H 1.09002 * 110.48891 * 279.18596 * 14 13 11 33 33 H 1.08998 * 110.48494 * 156.67683 * 14 13 11 34 34 H 0.96999 * 120.00365 * 266.45204 * 17 15 14 35 35 H 1.08004 * 119.99309 * 359.97438 * 20 18 17 36 36 H 1.08999 * 113.55984 * 320.63504 * 22 21 20 37 37 H 1.08996 * 113.56301 * 91.36675 * 22 21 20 38 38 H 1.09007 * 113.96864 * 220.29238 * 23 22 21 39 39 H 1.08996 * 113.71378 * 88.80618 * 23 22 21 40 40 H 1.09005 * 113.56141 * 268.63444 * 24 21 20 41 41 H 1.08996 * 113.56455 * 39.28674 * 24 21 20 42 42 H 1.08999 * 110.04012 * 119.28327 * 25 15 14 43 43 H 1.09003 * 110.03070 * 240.71854 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3433 -4.7048 -0.8085 13 6 0.3344 -4.9131 1.3682 14 6 -0.1146 -6.3950 1.4105 15 6 1.0580 -7.1671 0.7713 16 1 0.6777 -7.9935 0.1709 17 7 1.9523 -7.6753 1.8146 18 6 1.7011 -8.8645 2.3969 19 8 0.7319 -9.5156 2.0567 20 6 2.5987 -9.3745 3.4449 21 6 2.3506 -10.5477 4.0198 22 6 1.2932 -11.6246 3.8987 23 6 1.6059 -12.0018 5.3521 24 6 2.9959 -11.3999 5.0920 25 6 1.8074 -6.1656 -0.1247 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 -0.0002 28 1 2.6849 -3.7144 0.8906 29 1 2.6849 -3.7145 -0.8894 30 1 -0.5282 -4.2473 1.3947 31 1 1.0189 -4.6933 2.1874 32 1 -1.0256 -6.5344 0.8285 33 1 -0.2678 -6.7179 2.4403 34 1 2.7251 -7.1559 2.0862 35 1 3.4592 -8.7961 3.7472 36 1 0.2858 -11.2323 3.7592 37 1 1.5466 -12.4054 3.1817 38 1 1.6191 -13.0758 5.5379 39 1 1.0170 -11.4499 6.0847 40 1 3.7162 -12.1192 4.7021 41 1 3.3864 -10.8233 5.9306 42 1 2.8369 -6.0568 0.2165 43 1 1.7907 -6.5058 -1.1601 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725628341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:48 Heat of formation + Delta-G solvation = -1.135032 kcal Electronic energy + Delta-G solvation = -20999.468836 eV Core-core repulsion = 17852.208459 eV Total energy + Delta-G solvation = -3147.260377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.12729 -38.88942 -37.68288 -34.73093 -33.25694 -31.40113 -30.69722 -28.75550 -27.68044 -26.07897 -24.51078 -23.55006 -22.15585 -21.24624 -20.08229 -19.50828 -18.37680 -17.12560 -16.99412 -16.27103 -15.81882 -15.57472 -14.78276 -14.67724 -14.41469 -14.14337 -13.70136 -13.23755 -13.13151 -12.78478 -12.77676 -12.30708 -12.03320 -12.02363 -11.59255 -11.41910 -11.31832 -11.05359 -10.84990 -10.81356 -10.74055 -10.51224 -10.25066 -10.19406 -9.91955 -9.72596 -9.65066 -9.47211 -8.94517 -8.85100 -6.88817 -5.74639 -3.02788 1.17383 3.15040 3.24795 3.44008 3.49374 3.51806 4.10184 4.19572 4.43256 4.59602 4.73526 4.77711 4.83266 4.97238 5.10660 5.20156 5.28862 5.37581 5.48726 5.52247 5.57952 5.64298 5.66597 5.72066 5.80720 5.87971 5.90285 5.96593 5.98183 6.12362 6.18506 6.29414 6.35557 6.36792 6.55474 6.61481 6.66952 6.83697 6.96230 7.54567 7.71773 8.24872 8.44614 9.55659 10.15078 10.49629 11.48432 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037460 B = 0.002653 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.285492 B =10550.264422 C =10796.904777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.098 4.098 12 H 0.076 0.924 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.142 3.858 16 H 0.086 0.914 17 N -0.717 5.717 18 C 0.548 3.452 19 O -0.546 6.546 20 C -0.199 4.199 21 C -0.065 4.065 22 C -0.106 4.106 23 C -0.143 4.143 24 C -0.109 4.109 25 C -0.122 4.122 26 H 0.254 0.746 27 H 0.384 0.616 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.400 0.600 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 -23.553 8.256 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.117 4.117 12 H 0.095 0.905 13 C -0.148 4.148 14 C -0.171 4.171 15 C 0.038 3.962 16 H 0.104 0.896 17 N -0.368 5.368 18 C 0.337 3.663 19 O -0.426 6.426 20 C -0.219 4.219 21 C -0.066 4.066 22 C -0.142 4.142 23 C -0.180 4.180 24 C -0.146 4.146 25 C -0.160 4.160 26 H 0.064 0.936 27 H 0.218 0.782 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.235 0.765 35 H 0.150 0.850 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.739 -23.888 7.991 25.631 hybrid contribution 0.619 1.401 0.151 1.539 sum 5.358 -22.487 8.141 24.508 Atomic orbital electron populations 1.69669 1.05091 1.25478 1.58009 1.24744 0.95529 0.97681 1.03216 0.86124 0.78753 0.84203 0.77173 1.20602 1.21896 1.21906 1.19277 0.91025 0.84254 1.42295 0.91226 1.42366 1.05909 0.99969 1.89357 1.20682 0.93060 0.85403 0.97484 1.22239 0.97878 0.93656 0.97952 0.90513 1.22550 1.00399 0.94768 0.97123 1.22782 0.97546 0.95990 1.00808 1.21626 0.90109 0.96307 0.88174 0.89584 1.46129 1.29957 1.20650 1.40018 1.18425 0.85029 0.80947 0.81873 1.90761 1.29735 1.58178 1.63889 1.21648 1.01932 0.98202 1.00157 1.23449 0.96477 0.93517 0.93198 1.22210 0.99470 0.96226 0.96325 1.22735 0.96601 1.01315 0.97399 1.22355 0.97540 0.97887 0.96816 1.22445 0.99576 0.94625 0.99404 0.93597 0.78246 0.96482 0.96572 0.91053 0.91584 0.91055 0.91783 0.76494 0.85021 0.89490 0.88514 0.90446 0.89713 0.88179 0.90387 0.90964 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.60 5.49 -59.91 -0.33 -18.93 16 10 C 0.16 3.20 5.55 -4.04 -0.02 3.18 16 11 C -0.10 -1.56 2.88 -88.77 -0.26 -1.81 16 12 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.11 -1.72 6.23 -24.55 -0.15 -1.87 16 14 C -0.13 -1.81 6.52 -25.07 -0.16 -1.97 16 15 C 0.14 1.79 3.22 -66.82 -0.22 1.57 16 16 H 0.09 1.16 7.60 -51.93 -0.39 0.76 16 17 N -0.72 -8.12 5.04 -53.90 -0.27 -8.39 16 18 C 0.55 6.92 7.75 -12.66 -0.10 6.82 16 19 O -0.55 -8.66 14.83 5.26 0.08 -8.58 16 20 C -0.20 -1.96 10.03 -37.81 -0.38 -2.34 16 21 C -0.06 -0.60 6.93 -100.49 -0.70 -1.29 16 22 C -0.11 -0.95 6.99 -27.56 -0.19 -1.14 16 23 C -0.14 -0.94 8.17 -26.19 -0.21 -1.16 16 24 C -0.11 -0.70 7.96 -27.40 -0.22 -0.92 16 25 C -0.12 -1.53 6.14 -25.62 -0.16 -1.69 16 26 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.38 10.26 7.64 -40.82 -0.31 9.95 16 28 H 0.02 0.34 8.03 -51.92 -0.42 -0.07 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.05 7.98 -51.93 -0.41 0.64 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.90 8.04 -51.93 -0.42 0.49 16 34 H 0.40 3.70 8.28 -40.82 -0.34 3.36 16 35 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 36 H 0.09 0.96 7.49 -51.93 -0.39 0.57 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.84 7.30 -51.93 -0.38 0.46 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -32.74 351.14 -9.80 -42.54 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.26 Total: 8.33 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -3.01 Total: -10.02 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.12 Total: -55.08 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.74 -9.80 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725628341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.404 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds