Wall clock time and date at job start Tue Mar 31 2020 00:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99630 * 2 1 4 4 H 1.48503 * 109.46808 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46986 * 299.99682 * 3 2 1 6 6 H 1.48497 * 109.47195 * 59.99774 * 3 2 1 7 7 C 1.38812 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00129 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99617 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99973 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47575 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.43291 * 52.46077 * 11 10 9 13 13 C 1.55238 * 110.58012 * 289.87827 * 11 10 9 14 14 C 1.54894 * 102.58338 * 203.33342 * 13 11 10 15 15 C 1.54266 * 104.31305 * 37.93170 * 14 13 11 16 16 H 1.08995 * 110.03255 * 217.03136 * 15 14 13 17 17 N 1.46500 * 110.03070 * 95.65382 * 15 14 13 18 18 C 1.34780 * 120.00093 * 86.45671 * 17 15 14 19 19 O 1.21617 * 119.99848 * 359.97438 * 18 17 15 20 20 C 1.47103 * 120.00381 * 180.02562 * 18 17 15 21 21 C 1.32987 * 120.00258 * 179.97438 * 20 18 17 22 22 C 1.51409 * 136.31541 * 359.63240 * 21 20 18 23 23 C 1.53375 * 87.51724 * 206.05442 * 22 21 20 24 24 C 1.51399 * 136.31956 * 179.97438 * 21 20 18 25 25 C 1.53869 * 106.60031 * 336.32486 * 15 14 13 26 26 H 0.96996 * 120.00483 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00555 * 0.02562 * 9 7 2 28 28 H 1.09008 * 109.47079 * 60.00110 * 10 9 7 29 29 H 1.09000 * 109.47660 * 300.00470 * 10 9 7 30 30 H 1.08996 * 110.89448 * 85.04906 * 13 11 10 31 31 H 1.08993 * 110.76342 * 321.56571 * 13 11 10 32 32 H 1.09002 * 110.48891 * 279.18596 * 14 13 11 33 33 H 1.08998 * 110.48494 * 156.67683 * 14 13 11 34 34 H 0.96999 * 120.00365 * 266.45204 * 17 15 14 35 35 H 1.08004 * 119.99309 * 359.97438 * 20 18 17 36 36 H 1.08999 * 113.55984 * 320.63504 * 22 21 20 37 37 H 1.08996 * 113.56301 * 91.36675 * 22 21 20 38 38 H 1.09007 * 113.96864 * 220.29238 * 23 22 21 39 39 H 1.08996 * 113.71378 * 88.80618 * 23 22 21 40 40 H 1.09005 * 113.56141 * 268.63444 * 24 21 20 41 41 H 1.08996 * 113.56455 * 39.28674 * 24 21 20 42 42 H 1.08999 * 110.04012 * 119.28327 * 25 15 14 43 43 H 1.09003 * 110.03070 * 240.71854 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3433 -4.7048 -0.8085 13 6 0.3344 -4.9131 1.3682 14 6 -0.1146 -6.3950 1.4105 15 6 1.0580 -7.1671 0.7713 16 1 0.6777 -7.9935 0.1709 17 7 1.9523 -7.6753 1.8146 18 6 1.7011 -8.8645 2.3969 19 8 0.7319 -9.5156 2.0567 20 6 2.5987 -9.3745 3.4449 21 6 2.3506 -10.5477 4.0198 22 6 1.2932 -11.6246 3.8987 23 6 1.6059 -12.0018 5.3521 24 6 2.9959 -11.3999 5.0920 25 6 1.8074 -6.1656 -0.1247 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 -0.0002 28 1 2.6849 -3.7144 0.8906 29 1 2.6849 -3.7145 -0.8894 30 1 -0.5282 -4.2473 1.3947 31 1 1.0189 -4.6933 2.1874 32 1 -1.0256 -6.5344 0.8285 33 1 -0.2678 -6.7179 2.4403 34 1 2.7251 -7.1559 2.0862 35 1 3.4592 -8.7961 3.7472 36 1 0.2858 -11.2323 3.7592 37 1 1.5466 -12.4054 3.1817 38 1 1.6191 -13.0758 5.5379 39 1 1.0170 -11.4499 6.0847 40 1 3.7162 -12.1192 4.7021 41 1 3.3864 -10.8233 5.9306 42 1 2.8369 -6.0568 0.2165 43 1 1.7907 -6.5058 -1.1601 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725628341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:47 Heat of formation + Delta-G solvation = -21.506443 kcal Electronic energy + Delta-G solvation = -21000.352207 eV Core-core repulsion = 17852.208459 eV Total energy + Delta-G solvation = -3148.143747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09402 -39.71496 -38.74948 -36.42222 -34.63604 -32.99772 -31.74519 -30.13475 -28.96148 -26.67044 -26.23657 -24.38502 -23.89148 -22.12291 -21.21231 -20.77024 -19.21846 -18.99366 -18.00518 -17.30903 -16.75160 -16.49343 -16.35701 -15.79253 -15.55068 -15.29678 -15.13360 -14.88800 -14.59444 -14.27048 -13.46276 -13.32942 -13.16998 -12.94392 -12.82496 -12.69385 -12.63225 -12.48189 -12.12387 -12.07951 -11.90756 -11.86689 -11.61227 -11.54111 -11.48447 -11.42816 -10.91005 -10.65092 -10.27418 -9.87820 -8.97349 -7.94223 -5.22545 0.40395 1.47559 1.48433 1.58530 2.25822 2.34462 2.56848 3.39353 3.42242 3.58997 3.59672 3.62723 3.84214 3.91137 4.16001 4.21630 4.27493 4.44507 4.51023 4.53759 4.60256 4.62452 4.69601 4.75084 4.78513 4.86405 4.92464 4.95978 5.01473 5.04746 5.10033 5.15370 5.23229 5.28182 5.36360 5.37428 5.48265 5.55653 5.65120 5.70358 6.28560 6.65968 7.32340 7.34502 8.12511 8.34766 9.29787 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037460 B = 0.002653 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.285492 B =10550.264422 C =10796.904777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.091 4.091 12 H 0.067 0.933 13 C -0.106 4.106 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.080 0.920 17 N -0.709 5.709 18 C 0.542 3.458 19 O -0.587 6.587 20 C -0.213 4.213 21 C -0.072 4.072 22 C -0.118 4.118 23 C -0.136 4.136 24 C -0.096 4.096 25 C -0.109 4.109 26 H 0.250 0.750 27 H 0.373 0.627 28 H 0.024 0.976 29 H 0.020 0.980 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.413 0.587 35 H 0.159 0.841 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.595 -24.699 9.041 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.388 5.388 10 C 0.034 3.966 11 C -0.110 4.110 12 H 0.085 0.915 13 C -0.144 4.144 14 C -0.163 4.163 15 C 0.044 3.956 16 H 0.098 0.902 17 N -0.360 5.360 18 C 0.333 3.667 19 O -0.469 6.469 20 C -0.233 4.233 21 C -0.074 4.074 22 C -0.155 4.155 23 C -0.173 4.173 24 C -0.133 4.133 25 C -0.147 4.147 26 H 0.059 0.941 27 H 0.205 0.795 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.249 0.751 35 H 0.177 0.823 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.101 -25.052 8.782 27.480 hybrid contribution -0.119 1.674 -0.091 1.681 sum 6.982 -23.377 8.692 25.900 Atomic orbital electron populations 1.69828 1.06665 1.25942 1.59811 1.25592 0.96415 1.01197 1.03961 0.85063 0.78283 0.79767 0.76600 1.18887 1.22131 1.22109 1.19694 0.91538 0.85416 1.40700 0.90548 1.42608 1.05672 1.01289 1.89271 1.20865 0.93655 0.84493 0.97612 1.22115 0.97169 0.94043 0.97698 0.91495 1.22447 0.99450 0.95551 0.96913 1.22693 0.98220 0.94680 1.00683 1.21447 0.89909 0.95877 0.88354 0.90158 1.46041 1.29996 1.20494 1.39440 1.18951 0.84867 0.80771 0.82101 1.90743 1.31567 1.59292 1.65299 1.21740 1.02555 0.99057 0.99959 1.23913 0.96693 0.93360 0.93398 1.22321 0.98043 0.96682 0.98452 1.22726 0.96661 1.02565 0.95330 1.22392 0.97520 0.97414 0.95977 1.22337 0.99747 0.92212 1.00394 0.94081 0.79520 0.95784 0.96186 0.93320 0.91882 0.90969 0.92311 0.75054 0.82335 0.92323 0.88036 0.88578 0.89918 0.86314 0.89001 0.89383 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 3 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 7 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.75 -38.05 5.49 -343.45 -1.89 -39.94 16 10 C 0.16 6.20 5.55 86.38 0.48 6.68 16 11 C -0.09 -2.83 2.88 -9.60 -0.03 -2.85 16 12 H 0.07 2.22 8.14 -2.38 -0.02 2.21 16 13 C -0.11 -3.29 6.23 32.01 0.20 -3.09 16 14 C -0.12 -3.35 6.52 31.67 0.21 -3.15 16 15 C 0.15 3.58 3.22 45.71 0.15 3.73 16 16 H 0.08 2.09 7.60 -2.39 -0.02 2.07 16 17 N -0.71 -15.04 5.04 -442.70 -2.23 -17.27 16 18 C 0.54 13.30 7.75 86.57 0.67 13.97 16 19 O -0.59 -18.81 14.83 -4.09 -0.06 -18.87 16 20 C -0.21 -3.87 10.03 23.43 0.23 -3.63 16 21 C -0.07 -1.22 6.93 -17.17 -0.12 -1.34 16 22 C -0.12 -2.07 6.99 30.06 0.21 -1.86 16 23 C -0.14 -1.52 8.17 30.95 0.25 -1.26 16 24 C -0.10 -0.95 7.96 30.16 0.24 -0.71 16 25 C -0.11 -2.51 6.14 31.32 0.19 -2.31 16 26 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 27 H 0.37 20.39 7.64 -92.71 -0.71 19.69 16 28 H 0.02 0.92 8.03 -2.38 -0.02 0.90 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.98 7.98 -2.39 -0.02 1.96 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.66 8.04 -2.39 -0.02 1.64 16 34 H 0.41 6.71 8.28 -92.71 -0.77 5.94 16 35 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.06 1.35 7.49 -2.39 -0.02 1.33 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 1.79 7.30 -2.39 -0.02 1.77 16 43 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -71.00 351.14 1.65 -69.35 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.48 Total: 30.97 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 3.99 Total: -12.70 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -3.84 Total: -117.16 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.06 Total: -18.87 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -71.00 1.65 -69.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725628341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.845 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds