Wall clock time and date at job start Tue Mar 31 2020 00:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48502 * 109.46867 * 270.00341 * 3 2 1 5 5 H 1.48502 * 109.46851 * 29.99663 * 3 2 1 6 6 H 1.48491 * 109.47372 * 149.99937 * 3 2 1 7 7 C 1.38814 * 120.00454 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99434 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00139 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99596 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46679 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.82117 * 303.11499 * 11 10 9 13 13 C 1.54894 * 110.75410 * 66.45847 * 11 10 9 14 14 C 1.54266 * 104.31305 * 156.31914 * 13 11 10 15 15 C 1.53869 * 106.60031 * 336.32486 * 14 13 11 16 16 H 1.08999 * 110.04012 * 119.28327 * 15 14 13 17 17 N 1.46506 * 110.02971 * 240.71516 * 15 14 13 18 18 C 1.34776 * 120.00008 * 273.54584 * 17 15 14 19 19 O 1.21615 * 119.99926 * 359.97438 * 18 17 15 20 20 C 1.47098 * 120.00060 * 180.02562 * 18 17 15 21 21 C 1.32991 * 120.00314 * 179.97438 * 20 18 17 22 22 C 1.51408 * 136.31326 * 359.62441 * 21 20 18 23 23 C 1.53378 * 87.51912 * 206.05687 * 22 21 20 24 24 C 1.51405 * 136.32187 * 179.97438 * 21 20 18 25 25 C 1.54266 * 106.59800 * 359.97438 * 15 14 13 26 26 H 0.96996 * 120.00515 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99924 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.47462 * 60.00382 * 10 9 7 29 29 H 1.08995 * 109.47696 * 299.99705 * 10 9 7 30 30 H 1.09002 * 110.48891 * 37.57340 * 13 11 10 31 31 H 1.08998 * 110.48494 * 275.06427 * 13 11 10 32 32 H 1.09001 * 110.03084 * 95.60669 * 14 13 11 33 33 H 1.08995 * 110.03255 * 217.03136 * 14 13 11 34 34 H 0.97005 * 120.00035 * 93.54776 * 17 15 14 35 35 H 1.08006 * 120.00127 * 359.97438 * 20 18 17 36 36 H 1.09002 * 113.55986 * 320.64180 * 22 21 20 37 37 H 1.09002 * 113.55916 * 91.36960 * 22 21 20 38 38 H 1.08992 * 113.96869 * 220.29265 * 23 22 21 39 39 H 1.09002 * 113.71071 * 88.80791 * 23 22 21 40 40 H 1.09001 * 113.56092 * 268.63148 * 24 21 20 41 41 H 1.09004 * 113.55461 * 39.29007 * 24 21 20 42 42 H 1.09005 * 110.48526 * 142.29451 * 25 15 14 43 43 H 1.09006 * 110.48581 * 264.93644 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1911 0.0011 12 1 5.8956 -1.5731 -0.8522 13 6 6.0503 -1.5220 1.3289 14 6 7.5517 -1.8549 1.4510 15 6 7.7905 -3.1224 0.6120 16 1 8.5043 -2.9139 -0.1849 17 7 8.2920 -4.2022 1.4659 18 6 9.6133 -4.3114 1.7081 19 8 10.3894 -3.5138 1.2174 20 6 10.1169 -5.3958 2.5649 21 6 11.4208 -5.5039 2.8035 22 6 12.6735 -4.7557 2.3993 23 6 13.4453 -6.0623 2.6216 24 6 12.3157 -6.4337 3.5953 25 6 6.4258 -3.5160 0.0100 26 1 -0.4851 0.8400 0.0004 27 1 3.8646 -0.3620 0.0007 28 1 3.8493 -3.0422 -0.8892 29 1 3.8486 -3.0426 0.8908 30 1 5.4966 -1.9441 2.1676 31 1 5.9015 -0.4434 1.2790 32 1 8.1496 -1.0311 1.0612 33 1 7.8089 -2.0429 2.4933 34 1 7.6730 -4.8386 1.8569 35 1 9.4277 -6.1044 3.0003 36 1 12.6680 -4.4261 1.3604 37 1 12.9503 -3.9625 3.0938 38 1 14.4142 -5.9279 3.1023 39 1 13.4927 -6.6992 1.7383 40 1 12.4944 -6.1005 4.6176 41 1 12.0160 -7.4802 3.5381 42 1 6.5511 -3.8926 -1.0053 43 1 5.9331 -4.2602 0.6358 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725628345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:51 Heat of formation + Delta-G solvation = 2.903569 kcal Electronic energy + Delta-G solvation = -20955.670612 eV Core-core repulsion = 17808.585362 eV Total energy + Delta-G solvation = -3147.085250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18872 -38.94902 -37.80077 -34.93626 -33.39571 -31.51665 -30.91838 -29.01533 -27.85906 -26.13587 -24.65547 -23.54974 -21.90210 -21.19725 -20.43548 -19.52791 -18.45887 -17.54804 -17.15860 -16.37490 -15.84173 -15.72882 -14.88868 -14.60242 -14.45840 -14.31763 -13.86014 -13.42022 -13.09883 -12.83266 -12.70095 -12.36654 -12.17169 -12.09896 -11.93869 -11.70199 -11.37510 -11.31468 -10.90358 -10.88299 -10.76904 -10.44412 -10.36068 -10.31884 -10.04968 -9.81248 -9.56952 -9.54046 -9.04185 -8.86873 -7.19995 -5.74961 -3.09858 1.10332 3.05442 3.17249 3.39206 3.42295 3.46933 4.02932 4.13340 4.37357 4.61003 4.61563 4.68770 4.72412 4.89378 4.98861 5.14169 5.24118 5.31206 5.35423 5.43308 5.50440 5.54935 5.57429 5.60926 5.66113 5.76360 5.83493 5.86554 5.90453 5.91948 6.01874 6.11745 6.23683 6.29497 6.38034 6.47911 6.56882 6.71932 6.83997 7.45267 8.01774 8.16655 8.44396 9.24069 9.96626 10.16990 11.43579 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050488 B = 0.002650 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.458575 B =10562.758439 C =10803.359379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.115 4.115 14 C -0.133 4.133 15 C 0.142 3.858 16 H 0.089 0.911 17 N -0.719 5.719 18 C 0.548 3.452 19 O -0.545 6.545 20 C -0.200 4.200 21 C -0.063 4.063 22 C -0.106 4.106 23 C -0.143 4.143 24 C -0.109 4.109 25 C -0.120 4.120 26 H 0.259 0.741 27 H 0.361 0.639 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.400 0.600 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.583 -13.480 6.520 29.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.119 4.119 12 H 0.096 0.904 13 C -0.153 4.153 14 C -0.171 4.171 15 C 0.037 3.963 16 H 0.107 0.893 17 N -0.370 5.370 18 C 0.337 3.663 19 O -0.424 6.424 20 C -0.221 4.221 21 C -0.065 4.065 22 C -0.143 4.143 23 C -0.180 4.180 24 C -0.146 4.146 25 C -0.159 4.159 26 H 0.069 0.931 27 H 0.194 0.806 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.235 0.765 35 H 0.150 0.850 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 25.893 -12.987 6.156 29.614 hybrid contribution 0.044 0.879 0.250 0.915 sum 25.936 -12.108 6.406 29.332 Atomic orbital electron populations 1.69700 1.05098 1.25786 1.57776 1.24679 0.95253 0.97227 1.02169 0.86541 0.79234 0.84953 0.77788 1.21099 1.21774 1.20271 1.19069 0.80725 0.94690 1.42751 0.89283 1.42697 1.03965 1.02317 1.91112 1.20597 0.87784 0.89243 0.98459 1.22384 0.96094 0.95421 0.98044 0.90406 1.22376 0.94033 1.00993 0.97867 1.22578 0.97301 0.97189 1.00067 1.21672 0.95743 0.86394 0.92454 0.89320 1.46123 1.07367 1.32133 1.51375 1.18436 0.82286 0.84796 0.80752 1.90768 1.56164 1.43625 1.51823 1.21632 0.94446 1.01258 1.04734 1.23472 0.93042 0.96308 0.93697 1.22220 0.91757 0.96714 1.03584 1.22734 0.97591 0.98005 0.99713 1.22361 0.94366 0.99045 0.98818 1.22675 0.93669 0.98392 1.01125 0.93102 0.80640 0.95593 0.95561 0.91192 0.91598 0.91494 0.91694 0.76530 0.85013 0.89504 0.88446 0.90401 0.89732 0.88117 0.90380 0.90919 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.67 13.97 55.49 0.78 -28.89 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 22.38 27.74 -169.99 -4.71 17.66 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 7 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 9 N -0.76 -18.03 5.25 -59.90 -0.31 -18.34 16 10 C 0.17 3.15 5.71 -4.04 -0.02 3.13 16 11 C -0.10 -1.49 2.98 -88.42 -0.26 -1.75 16 12 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.11 -1.67 5.96 -25.07 -0.15 -1.82 16 14 C -0.13 -1.70 6.59 -25.62 -0.17 -1.87 16 15 C 0.14 1.68 3.23 -66.81 -0.22 1.47 16 16 H 0.09 1.16 7.61 -51.93 -0.40 0.77 16 17 N -0.72 -7.43 4.99 -53.90 -0.27 -7.70 16 18 C 0.55 6.52 7.75 -12.67 -0.10 6.42 16 19 O -0.54 -8.35 14.83 5.26 0.08 -8.28 16 20 C -0.20 -1.82 10.03 -37.81 -0.38 -2.20 16 21 C -0.06 -0.55 6.93 -100.48 -0.70 -1.24 16 22 C -0.11 -0.90 6.99 -27.56 -0.19 -1.10 16 23 C -0.14 -0.86 8.17 -26.19 -0.21 -1.07 16 24 C -0.11 -0.63 7.96 -27.40 -0.22 -0.85 16 25 C -0.12 -1.40 5.99 -24.87 -0.15 -1.55 16 26 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 27 H 0.36 8.43 5.39 -40.82 -0.22 8.21 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.03 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.83 7.92 -51.93 -0.41 0.42 16 34 H 0.40 3.13 8.32 -40.82 -0.34 2.79 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.09 0.90 7.49 -51.93 -0.39 0.52 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.80 7.64 -51.93 -0.40 0.40 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -33.74 348.07 -9.45 -43.19 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.23 Total: 6.68 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.02 Total: -9.56 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.19 Total: -54.94 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.74 -9.45 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725628345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.096 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds