Wall clock time and date at job start Tue Mar 31 2020 00:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48502 * 109.46867 * 270.00341 * 3 2 1 5 5 H 1.48502 * 109.46851 * 29.99663 * 3 2 1 6 6 H 1.48491 * 109.47372 * 149.99937 * 3 2 1 7 7 C 1.38814 * 120.00454 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99434 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00139 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99596 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46679 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.82117 * 303.11499 * 11 10 9 13 13 C 1.54894 * 110.75410 * 66.45847 * 11 10 9 14 14 C 1.54266 * 104.31305 * 156.31914 * 13 11 10 15 15 C 1.53869 * 106.60031 * 336.32486 * 14 13 11 16 16 H 1.08999 * 110.04012 * 119.28327 * 15 14 13 17 17 N 1.46506 * 110.02971 * 240.71516 * 15 14 13 18 18 C 1.34776 * 120.00008 * 273.54584 * 17 15 14 19 19 O 1.21615 * 119.99926 * 359.97438 * 18 17 15 20 20 C 1.47098 * 120.00060 * 180.02562 * 18 17 15 21 21 C 1.32991 * 120.00314 * 179.97438 * 20 18 17 22 22 C 1.51408 * 136.31326 * 359.62441 * 21 20 18 23 23 C 1.53378 * 87.51912 * 206.05687 * 22 21 20 24 24 C 1.51405 * 136.32187 * 179.97438 * 21 20 18 25 25 C 1.54266 * 106.59800 * 359.97438 * 15 14 13 26 26 H 0.96996 * 120.00515 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99924 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.47462 * 60.00382 * 10 9 7 29 29 H 1.08995 * 109.47696 * 299.99705 * 10 9 7 30 30 H 1.09002 * 110.48891 * 37.57340 * 13 11 10 31 31 H 1.08998 * 110.48494 * 275.06427 * 13 11 10 32 32 H 1.09001 * 110.03084 * 95.60669 * 14 13 11 33 33 H 1.08995 * 110.03255 * 217.03136 * 14 13 11 34 34 H 0.97005 * 120.00035 * 93.54776 * 17 15 14 35 35 H 1.08006 * 120.00127 * 359.97438 * 20 18 17 36 36 H 1.09002 * 113.55986 * 320.64180 * 22 21 20 37 37 H 1.09002 * 113.55916 * 91.36960 * 22 21 20 38 38 H 1.08992 * 113.96869 * 220.29265 * 23 22 21 39 39 H 1.09002 * 113.71071 * 88.80791 * 23 22 21 40 40 H 1.09001 * 113.56092 * 268.63148 * 24 21 20 41 41 H 1.09004 * 113.55461 * 39.29007 * 24 21 20 42 42 H 1.09005 * 110.48526 * 142.29451 * 25 15 14 43 43 H 1.09006 * 110.48581 * 264.93644 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1911 0.0011 12 1 5.8956 -1.5731 -0.8522 13 6 6.0503 -1.5220 1.3289 14 6 7.5517 -1.8549 1.4510 15 6 7.7905 -3.1224 0.6120 16 1 8.5043 -2.9139 -0.1849 17 7 8.2920 -4.2022 1.4659 18 6 9.6133 -4.3114 1.7081 19 8 10.3894 -3.5138 1.2174 20 6 10.1169 -5.3958 2.5649 21 6 11.4208 -5.5039 2.8035 22 6 12.6735 -4.7557 2.3993 23 6 13.4453 -6.0623 2.6216 24 6 12.3157 -6.4337 3.5953 25 6 6.4258 -3.5160 0.0100 26 1 -0.4851 0.8400 0.0004 27 1 3.8646 -0.3620 0.0007 28 1 3.8493 -3.0422 -0.8892 29 1 3.8486 -3.0426 0.8908 30 1 5.4966 -1.9441 2.1676 31 1 5.9015 -0.4434 1.2790 32 1 8.1496 -1.0311 1.0612 33 1 7.8089 -2.0429 2.4933 34 1 7.6730 -4.8386 1.8569 35 1 9.4277 -6.1044 3.0003 36 1 12.6680 -4.4261 1.3604 37 1 12.9503 -3.9625 3.0938 38 1 14.4142 -5.9279 3.1023 39 1 13.4927 -6.6992 1.7383 40 1 12.4944 -6.1005 4.6176 41 1 12.0160 -7.4802 3.5381 42 1 6.5511 -3.8926 -1.0053 43 1 5.9331 -4.2602 0.6358 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725628345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:50 Heat of formation + Delta-G solvation = -18.837689 kcal Electronic energy + Delta-G solvation = -20956.613384 eV Core-core repulsion = 17808.585362 eV Total energy + Delta-G solvation = -3148.028022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08160 -39.71999 -38.79876 -36.57393 -34.72903 -33.30223 -31.83996 -30.33919 -29.01286 -26.67920 -26.22047 -24.29914 -23.72058 -22.02404 -21.52773 -20.73145 -19.57827 -19.14972 -17.99456 -17.33259 -16.79845 -16.50090 -16.36162 -15.93249 -15.54681 -15.41820 -15.02740 -14.94889 -14.61091 -14.20937 -13.75741 -13.53482 -13.33995 -12.94232 -12.92202 -12.78059 -12.65780 -12.54111 -12.15683 -11.97634 -11.90885 -11.81462 -11.67972 -11.57263 -11.47598 -11.45769 -10.95491 -10.67386 -10.28737 -9.89319 -9.27822 -8.02793 -5.35409 0.39440 1.37432 1.40347 1.47756 2.22975 2.33489 2.48113 3.28508 3.39340 3.50112 3.57144 3.60805 3.82105 3.84762 3.98564 4.19869 4.26336 4.38899 4.48602 4.50720 4.58440 4.61525 4.63713 4.71411 4.74453 4.85896 4.89964 4.94883 5.02214 5.04379 5.11253 5.13438 5.19084 5.27620 5.32301 5.35436 5.50626 5.63100 5.69367 5.76295 6.21727 6.65322 7.08654 7.31855 7.86077 8.04663 9.18790 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050488 B = 0.002650 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.458575 B =10562.758439 C =10803.359379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.232 4.232 8 H 0.057 0.943 9 N -0.758 5.758 10 C 0.163 3.837 11 C -0.095 4.095 12 H 0.077 0.923 13 C -0.112 4.112 14 C -0.124 4.124 15 C 0.148 3.852 16 H 0.077 0.923 17 N -0.709 5.709 18 C 0.542 3.458 19 O -0.588 6.588 20 C -0.211 4.211 21 C -0.072 4.072 22 C -0.120 4.120 23 C -0.135 4.135 24 C -0.097 4.097 25 C -0.107 4.107 26 H 0.258 0.742 27 H 0.365 0.635 28 H 0.025 0.975 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.415 0.585 35 H 0.162 0.838 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.850 -14.547 7.475 32.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.176 1.176 7 C -0.363 4.363 8 H 0.075 0.925 9 N -0.404 5.404 10 C 0.037 3.963 11 C -0.114 4.114 12 H 0.096 0.904 13 C -0.150 4.150 14 C -0.163 4.163 15 C 0.043 3.957 16 H 0.095 0.905 17 N -0.360 5.360 18 C 0.333 3.667 19 O -0.470 6.470 20 C -0.232 4.232 21 C -0.074 4.074 22 C -0.156 4.156 23 C -0.172 4.172 24 C -0.133 4.133 25 C -0.146 4.146 26 H 0.066 0.934 27 H 0.198 0.802 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.252 0.748 35 H 0.179 0.821 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 28.187 -14.108 7.123 32.316 hybrid contribution -0.655 1.127 -0.060 1.305 sum 27.532 -12.982 7.062 31.248 Atomic orbital electron populations 1.69880 1.07089 1.26643 1.59894 1.25516 0.96149 1.01270 1.02845 0.85421 0.78693 0.79672 0.78102 1.20493 1.22249 1.17607 1.19066 0.82838 0.93464 1.40981 0.92456 1.42732 1.02407 1.04374 1.90890 1.20778 0.90021 0.87203 0.98270 1.22272 0.93443 0.97408 0.98267 0.90438 1.22319 0.95088 1.00118 0.97462 1.22484 0.95896 0.97593 1.00315 1.21474 0.95515 0.86521 0.92217 0.90519 1.46001 1.07352 1.31851 1.50798 1.18972 0.82260 0.84977 0.80534 1.90751 1.57188 1.45406 1.53638 1.21745 0.95261 1.01208 1.04954 1.23914 0.93070 0.96819 0.93573 1.22322 0.93219 0.98113 1.01987 1.22727 0.98380 0.96075 1.00038 1.22387 0.92679 0.99255 0.98996 1.22582 0.92786 0.96899 1.02293 0.93370 0.80163 0.95668 0.95383 0.91592 0.92838 0.91941 0.91554 0.74812 0.82097 0.92227 0.88349 0.88752 0.89668 0.86560 0.88785 0.89695 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 3 Si 0.95 46.11 27.74 68.60 1.90 48.01 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 7 C -0.23 -13.40 10.47 84.03 0.88 -12.52 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 9 N -0.76 -35.51 5.25 -343.44 -1.80 -37.31 16 10 C 0.16 5.98 5.71 86.38 0.49 6.47 16 11 C -0.09 -2.64 2.98 -9.37 -0.03 -2.67 16 12 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 13 C -0.11 -3.08 5.96 31.67 0.19 -2.89 16 14 C -0.12 -3.00 6.59 31.32 0.21 -2.80 16 15 C 0.15 3.25 3.23 45.71 0.15 3.40 16 16 H 0.08 1.93 7.61 -2.39 -0.02 1.91 16 17 N -0.71 -13.29 4.99 -442.70 -2.21 -15.50 16 18 C 0.54 12.29 7.75 86.57 0.67 12.96 16 19 O -0.59 -18.08 14.83 -4.08 -0.06 -18.14 16 20 C -0.21 -3.44 10.03 23.43 0.23 -3.20 16 21 C -0.07 -1.12 6.93 -17.17 -0.12 -1.24 16 22 C -0.12 -1.97 6.99 30.06 0.21 -1.76 16 23 C -0.13 -1.34 8.17 30.95 0.25 -1.09 16 24 C -0.10 -0.84 7.96 30.16 0.24 -0.60 16 25 C -0.11 -2.24 5.99 31.80 0.19 -2.05 16 26 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 27 H 0.37 16.41 5.39 -92.71 -0.50 15.92 16 28 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 30 H 0.07 1.87 8.01 -2.39 -0.02 1.85 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.59 7.92 -2.39 -0.02 1.57 16 34 H 0.41 5.34 8.32 -92.70 -0.77 4.57 16 35 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.06 1.30 7.49 -2.39 -0.02 1.28 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.09 1.64 7.64 -2.38 -0.02 1.62 16 Total: -1.00 -74.26 348.07 1.83 -72.42 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.33 Total: 25.47 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 4.03 Total: -11.50 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -3.71 Total: -116.27 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.06 Total: -18.14 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.01 kcal Total: -74.26 1.83 -72.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725628345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.584 kcal (2) G-P(sol) polarization free energy of solvation -74.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds