Wall clock time and date at job start Tue Mar 31 2020 00:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 119.99769 * 2 1 4 4 H 1.48500 * 109.47199 * 269.99568 * 3 2 1 5 5 H 1.48496 * 109.47316 * 30.00184 * 3 2 1 6 6 H 1.48503 * 109.46805 * 150.00388 * 3 2 1 7 7 C 1.38810 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99910 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00194 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47399 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.88164 * 308.87555 * 11 10 9 13 13 C 1.55404 * 111.03856 * 72.67697 * 11 10 9 14 14 C 1.54326 * 102.82520 * 153.47944 * 13 11 10 15 15 N 1.47019 * 107.39986 * 337.97288 * 14 13 11 16 16 C 1.34782 * 125.64587 * 178.90830 * 15 14 13 17 17 O 1.21277 * 120.00017 * 354.95462 * 16 15 14 18 18 C 1.50697 * 119.99997 * 174.96328 * 16 15 14 19 19 H 1.09003 * 109.64460 * 27.06737 * 18 16 15 20 20 C 1.53022 * 109.64264 * 266.43041 * 18 16 15 21 21 C 1.50066 * 110.14712 * 190.87954 * 20 18 16 22 22 C 1.29448 * 124.07637 * 17.13015 * 21 20 18 23 23 C 1.50061 * 124.07667 * 359.52955 * 22 21 20 24 24 C 1.53029 * 110.14676 * 17.13493 * 23 22 21 25 25 C 1.47419 * 108.70923 * 358.86539 * 15 14 13 26 26 H 0.97007 * 120.00125 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99912 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47385 * 59.99264 * 10 9 7 29 29 H 1.09007 * 109.46843 * 299.99330 * 10 9 7 30 30 H 1.08995 * 110.69457 * 35.18403 * 13 11 10 31 31 H 1.09000 * 110.84702 * 271.83354 * 13 11 10 32 32 H 1.09000 * 109.87619 * 218.48224 * 14 13 11 33 33 H 1.08998 * 109.88445 * 97.47007 * 14 13 11 34 34 H 1.09001 * 109.35707 * 311.08608 * 20 18 16 35 35 H 1.08998 * 109.35842 * 70.67415 * 20 18 16 36 36 H 1.08000 * 117.96366 * 197.15382 * 21 20 18 37 37 H 1.07999 * 117.96057 * 179.50694 * 22 21 20 38 38 H 1.08997 * 109.35881 * 256.92824 * 23 22 21 39 39 H 1.09000 * 109.35943 * 137.33304 * 23 22 21 40 40 H 1.09004 * 109.64440 * 190.88431 * 24 23 22 41 41 H 1.08999 * 109.81891 * 70.34848 * 24 23 22 42 42 H 1.09003 * 110.37102 * 142.96461 * 25 15 14 43 43 H 1.09001 * 110.37335 * 265.18359 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0639 -4.8197 0.0021 12 1 0.3252 -4.6991 0.7946 13 6 0.3736 -4.9640 -1.3828 14 6 0.0018 -6.4612 -1.4258 15 7 0.8820 -7.1602 -0.4781 16 6 0.8563 -8.4808 -0.2098 17 8 -0.0014 -9.1830 -0.7019 18 6 1.8933 -9.0848 0.7017 19 1 2.2520 -8.3289 1.4003 20 6 3.0614 -9.6184 -0.1303 21 6 3.9688 -10.4512 0.7271 22 6 3.6329 -10.9391 1.8781 23 6 2.2927 -10.7317 2.5205 24 6 1.2774 -10.2548 1.4796 25 6 1.7981 -6.1778 0.1292 26 1 -0.4851 0.8401 -0.0004 27 1 0.3556 -2.3880 0.0005 28 1 2.6842 -3.7141 0.8921 29 1 2.6854 -3.7149 -0.8879 30 1 1.0667 -4.7155 -2.1864 31 1 -0.5204 -4.3429 -1.4372 32 1 0.1548 -6.8523 -2.4316 33 1 -1.0393 -6.5932 -1.1312 34 1 2.6747 -10.2288 -0.9463 35 1 3.6232 -8.7806 -0.5433 36 1 4.9641 -10.6560 0.3613 37 1 4.3625 -11.5327 2.4089 38 1 2.3815 -9.9833 3.3080 39 1 1.9507 -11.6712 2.9546 40 1 0.3676 -9.9233 1.9802 41 1 1.0423 -11.0680 0.7930 42 1 1.9714 -6.4186 1.1781 43 1 2.7424 -6.1528 -0.4146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731651808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:40 Heat of formation + Delta-G solvation = -41.493392 kcal Electronic energy + Delta-G solvation = -21620.089963 eV Core-core repulsion = 18471.079516 eV Total energy + Delta-G solvation = -3149.010447 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48792 -39.43036 -38.24784 -36.39012 -33.88389 -32.68049 -31.79896 -31.40160 -30.26904 -27.07401 -25.43792 -24.35973 -24.01536 -22.97235 -21.33398 -20.20118 -19.15828 -18.94661 -18.02643 -17.53254 -16.92963 -16.50744 -16.24658 -15.45999 -15.31369 -14.95718 -14.83723 -14.66759 -14.58591 -14.10728 -13.92872 -13.91524 -13.59337 -13.37184 -13.19168 -12.98397 -12.89814 -12.72009 -12.24309 -12.12946 -11.97084 -11.80313 -11.74242 -11.64362 -11.58651 -11.35349 -10.89897 -10.71476 -9.86633 -9.72329 -8.96151 -7.92659 -5.20821 1.41190 1.50187 1.51227 1.54227 1.59641 1.91785 2.58374 3.32735 3.40763 3.49238 3.69552 3.73707 3.85541 3.87698 4.13276 4.21260 4.29677 4.31799 4.38986 4.41148 4.42647 4.60746 4.62215 4.64681 4.70291 4.79172 4.85392 4.90062 4.95367 5.01076 5.04711 5.07410 5.22601 5.23774 5.26009 5.35025 5.41453 5.53679 5.77894 6.06939 6.29642 6.46183 7.06766 7.36631 8.13323 8.35079 9.30937 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.003210 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.546632 B = 8719.808123 C = 9253.100809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.242 4.242 8 H 0.078 0.922 9 N -0.745 5.745 10 C 0.165 3.835 11 C -0.099 4.099 12 H 0.075 0.925 13 C -0.114 4.114 14 C 0.109 3.891 15 N -0.616 5.616 16 C 0.529 3.471 17 O -0.586 6.586 18 C -0.099 4.099 19 H 0.109 0.891 20 C -0.075 4.075 21 C -0.161 4.161 22 C -0.156 4.156 23 C -0.090 4.090 24 C -0.102 4.102 25 C 0.113 3.887 26 H 0.250 0.750 27 H 0.374 0.626 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.931 -21.615 3.044 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.388 5.388 10 C 0.038 3.962 11 C -0.119 4.119 12 H 0.094 0.906 13 C -0.152 4.152 14 C -0.013 4.013 15 N -0.348 5.348 16 C 0.320 3.680 17 O -0.466 6.466 18 C -0.120 4.120 19 H 0.127 0.873 20 C -0.112 4.112 21 C -0.179 4.179 22 C -0.174 4.174 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.009 4.009 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.654 -21.975 2.803 23.438 hybrid contribution -0.438 1.254 -0.269 1.356 sum 7.216 -20.721 2.534 22.087 Atomic orbital electron populations 1.69812 1.06623 1.25981 1.59698 1.25543 0.96341 1.01072 1.03906 0.85170 0.77795 0.79632 0.77351 1.21565 1.22495 1.19242 1.19647 0.91609 0.85281 1.40840 0.90361 1.42537 1.05681 1.01133 1.89415 1.20695 0.93207 0.83812 0.98459 1.22442 0.97869 0.93800 0.97742 0.90645 1.22615 1.01480 0.93517 0.97622 1.21916 0.94234 0.92029 0.93151 1.48674 1.36520 1.06941 1.42687 1.20905 0.85643 0.80020 0.81470 1.90659 1.39994 1.61001 1.54994 1.21428 0.94383 0.99192 0.97004 0.87274 1.20305 0.93967 0.99631 0.97327 1.22040 0.99935 0.99542 0.96416 1.22265 0.98003 1.00169 0.96953 1.20503 0.92182 1.02559 0.97395 1.21454 0.98256 0.96555 0.97714 1.22415 0.92919 0.85749 0.99854 0.94117 0.79434 0.95172 0.95283 0.90269 0.90863 0.91366 0.92363 0.91601 0.89584 0.86126 0.86107 0.89585 0.89482 0.92014 0.92235 0.88418 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -35.85 5.55 -343.45 -1.91 -37.75 16 10 C 0.16 5.84 5.72 86.38 0.49 6.34 16 11 C -0.10 -2.82 3.05 -9.31 -0.03 -2.84 16 12 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 13 C -0.11 -3.21 6.39 31.87 0.20 -3.01 16 14 C 0.11 2.91 6.86 86.73 0.60 3.51 16 15 N -0.62 -15.51 3.33 -811.80 -2.70 -18.21 16 16 C 0.53 14.10 6.86 87.66 0.60 14.70 16 17 O -0.59 -20.20 16.72 -3.02 -0.05 -20.25 16 18 C -0.10 -1.92 2.26 -11.40 -0.03 -1.94 16 19 H 0.11 1.77 6.42 -2.39 -0.02 1.75 16 20 C -0.07 -1.27 5.42 29.66 0.16 -1.11 16 21 C -0.16 -2.28 9.80 27.03 0.27 -2.01 16 22 C -0.16 -2.03 9.80 27.03 0.26 -1.77 16 23 C -0.09 -1.19 6.12 29.66 0.18 -1.01 16 24 C -0.10 -1.91 4.82 30.74 0.15 -1.76 16 25 C 0.11 2.45 6.04 86.86 0.52 2.97 16 26 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 27 H 0.37 19.33 7.67 -92.71 -0.71 18.62 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.03 1.02 7.98 -2.38 -0.02 1.00 16 30 H 0.08 2.22 7.92 -2.39 -0.02 2.20 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.12 1.36 8.06 -2.91 -0.02 1.33 16 37 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.06 1.29 8.07 -2.39 -0.02 1.28 16 42 H 0.10 1.74 6.87 -2.39 -0.02 1.73 16 43 H 0.09 1.70 8.04 -2.39 -0.02 1.69 16 Total: -1.00 -67.35 344.74 2.61 -64.74 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.27 Total: 26.43 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 4.69 Total: -3.95 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.32 Total: -114.15 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -67.35 2.61 -64.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731651808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.246 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds