Wall clock time and date at job start Tue Mar 31 2020 00:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 120.00101 * 2 1 4 4 H 1.48500 * 109.47068 * 270.00092 * 3 2 1 5 5 H 1.48497 * 109.46924 * 30.00305 * 3 2 1 6 6 H 1.48503 * 109.47177 * 150.00214 * 3 2 1 7 7 C 1.38812 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00128 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99874 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99754 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46992 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.89087 * 57.42678 * 11 10 9 13 13 C 1.55157 * 111.00362 * 293.54446 * 11 10 9 14 14 C 1.54321 * 102.94144 * 206.42384 * 13 11 10 15 15 N 1.47021 * 107.27342 * 22.19568 * 14 13 11 16 16 C 1.34776 * 125.65148 * 181.10602 * 15 14 13 17 17 O 1.21283 * 120.00186 * 174.89402 * 16 15 14 18 18 C 1.50705 * 119.99968 * 354.89188 * 16 15 14 19 19 H 1.09003 * 109.63968 * 334.37297 * 18 16 15 20 20 C 1.53026 * 109.64304 * 94.78724 * 18 16 15 21 21 C 1.50066 * 110.14870 * 169.12066 * 20 18 16 22 22 C 1.29444 * 124.07173 * 342.87395 * 21 20 18 23 23 C 1.50064 * 124.08261 * 0.48803 * 22 21 20 24 24 C 1.53044 * 110.13691 * 342.83428 * 23 22 21 25 25 C 1.47424 * 108.70307 * 1.05845 * 15 14 13 26 26 H 0.97006 * 119.99645 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00564 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47294 * 299.99694 * 10 9 7 29 29 H 1.09004 * 109.47434 * 59.99956 * 10 9 7 30 30 H 1.08999 * 110.72438 * 324.78635 * 13 11 10 31 31 H 1.09001 * 110.72350 * 87.88682 * 13 11 10 32 32 H 1.09004 * 109.88616 * 141.61116 * 14 13 11 33 33 H 1.09000 * 109.88645 * 262.77503 * 14 13 11 34 34 H 1.08997 * 109.36124 * 289.33353 * 20 18 16 35 35 H 1.09006 * 109.35562 * 49.05053 * 20 18 16 36 36 H 1.07998 * 117.96356 * 162.89050 * 21 20 18 37 37 H 1.08002 * 117.96145 * 180.46855 * 22 21 20 38 38 H 1.08998 * 109.35916 * 103.05155 * 23 22 21 39 39 H 1.08991 * 109.36215 * 222.64590 * 23 22 21 40 40 H 1.09005 * 109.65694 * 289.78055 * 24 23 22 41 41 H 1.09002 * 109.63858 * 169.13993 * 24 23 22 42 42 H 1.08996 * 110.36725 * 217.04016 * 25 15 14 43 43 H 1.08990 * 110.36923 * 94.71024 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1120 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0000 12 1 5.8983 -1.5813 0.8582 13 6 6.0573 -1.5208 -1.3279 14 6 7.5391 -1.9346 -1.4485 15 7 7.7228 -3.1432 -0.6317 16 6 8.8841 -3.8044 -0.4573 17 8 8.9400 -4.7390 0.3137 18 6 10.1133 -3.3827 -1.2205 19 1 9.8182 -2.8840 -2.1437 20 6 10.9479 -2.4277 -0.3642 21 6 12.2921 -2.2089 -0.9946 22 6 12.7988 -2.9752 -1.9065 23 6 12.1085 -4.1834 -2.4685 24 6 10.9670 -4.6151 -1.5450 25 6 6.4264 -3.5114 -0.0341 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0004 28 1 3.8484 -3.0427 0.8898 29 1 3.8491 -3.0423 -0.8902 30 1 5.4792 -1.9088 -2.1665 31 1 5.9608 -0.4370 -1.2634 32 1 7.7803 -2.1505 -2.4894 33 1 8.1789 -1.1346 -1.0759 34 1 10.4295 -1.4727 -0.2782 35 1 11.0822 -2.8565 0.6289 36 1 12.8730 -1.3595 -0.6668 37 1 13.7793 -2.7296 -2.2869 38 1 11.7064 -3.9445 -3.4530 39 1 12.8257 -4.9988 -2.5614 40 1 11.3771 -5.0295 -0.6240 41 1 10.3536 -5.3640 -2.0462 42 1 6.5696 -3.8947 0.9761 43 1 5.9197 -4.2515 -0.6533 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731651811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:48 Heat of formation + Delta-G solvation = -19.103128 kcal Electronic energy + Delta-G solvation = -21635.247852 eV Core-core repulsion = 18487.208320 eV Total energy + Delta-G solvation = -3148.039532 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.53826 -38.57348 -37.28065 -34.88560 -32.46101 -31.52271 -31.12742 -30.41950 -29.26385 -25.97532 -24.12625 -23.33753 -22.54964 -21.93002 -20.22842 -19.23802 -18.26155 -17.66096 -17.24698 -16.37789 -16.01316 -15.38757 -14.74514 -14.42225 -14.14381 -13.96210 -13.76935 -13.61523 -13.40348 -13.15746 -12.84165 -12.71592 -12.58898 -12.52317 -12.39700 -11.80995 -11.62522 -11.29195 -11.11361 -10.97713 -10.71646 -10.71263 -10.61883 -10.52112 -10.14423 -9.74533 -9.61469 -9.33569 -8.93075 -8.69447 -7.26694 -5.79245 -3.15206 1.94791 2.51574 2.88152 3.34127 3.35870 3.42611 4.17075 4.38161 4.43093 4.56069 4.60557 4.64678 4.84199 4.88764 4.95020 4.96469 5.11456 5.17092 5.20914 5.32932 5.35119 5.48000 5.52579 5.53465 5.59277 5.62295 5.73370 5.79505 5.83857 5.86509 5.91531 5.97873 6.10766 6.16328 6.29434 6.31268 6.59525 6.60315 6.70389 7.44650 7.96701 8.07581 8.39605 9.18362 9.90404 10.10075 11.39189 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034883 B = 0.003277 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.491922 B = 8541.119647 C = 9016.057177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.169 3.831 11 C -0.110 4.110 12 H 0.083 0.917 13 C -0.125 4.125 14 C 0.099 3.901 15 N -0.617 5.617 16 C 0.533 3.467 17 O -0.542 6.542 18 C -0.103 4.103 19 H 0.091 0.909 20 C -0.079 4.079 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.092 4.092 24 C -0.101 4.101 25 C 0.112 3.888 26 H 0.260 0.740 27 H 0.361 0.639 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.799 -4.812 -5.512 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.041 3.959 11 C -0.130 4.130 12 H 0.102 0.898 13 C -0.162 4.162 14 C -0.023 4.023 15 N -0.351 5.351 16 C 0.321 3.679 17 O -0.420 6.420 18 C -0.124 4.124 19 H 0.110 0.890 20 C -0.116 4.116 21 C -0.170 4.170 22 C -0.174 4.174 23 C -0.129 4.129 24 C -0.139 4.139 25 C -0.011 4.011 26 H 0.070 0.930 27 H 0.193 0.807 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 25.662 -5.440 -5.090 26.721 hybrid contribution 0.507 1.457 -0.048 1.543 sum 26.168 -3.984 -5.138 26.964 Atomic orbital electron populations 1.69701 1.05119 1.25841 1.57517 1.24679 0.95239 0.97217 1.02041 0.86544 0.79215 0.85002 0.77746 1.21030 1.21715 1.20371 1.19058 0.80565 0.94782 1.43039 0.89178 1.42654 1.04018 1.02087 1.91241 1.20525 0.86819 0.89516 0.99043 1.22621 0.96803 0.95556 0.97994 0.89814 1.22679 0.93112 1.01716 0.98738 1.22127 0.98411 0.86792 0.95019 1.48592 1.08666 1.28498 1.49314 1.20280 0.83202 0.82108 0.82294 1.90695 1.84607 1.29437 1.37212 1.21360 0.93095 0.98550 0.99385 0.89030 1.20352 0.93343 0.98945 0.98988 1.21984 0.96851 0.99781 0.98369 1.22073 0.99870 0.96877 0.98620 1.20486 0.97168 0.96339 0.98867 1.21466 0.96087 0.95799 1.00576 1.22247 0.82362 0.97187 0.99265 0.93029 0.80665 0.95141 0.95087 0.89818 0.89930 0.91406 0.91501 0.90530 0.90034 0.87542 0.87825 0.90722 0.90621 0.90532 0.91248 0.90280 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 21.65 27.74 -169.99 -4.71 16.94 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.98 16 7 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.32 5.26 -59.91 -0.31 -17.64 16 10 C 0.17 3.10 5.71 -4.04 -0.02 3.07 16 11 C -0.11 -1.58 3.10 -88.47 -0.27 -1.86 16 12 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 13 C -0.12 -1.55 6.13 -24.90 -0.15 -1.71 16 14 C 0.10 1.02 6.16 -3.07 -0.02 1.00 16 15 N -0.62 -7.69 3.33 -170.52 -0.57 -8.25 16 16 C 0.53 6.95 6.84 -10.98 -0.08 6.88 16 17 O -0.54 -9.02 16.64 5.56 0.09 -8.93 16 18 C -0.10 -0.99 2.20 -91.55 -0.20 -1.19 16 19 H 0.09 0.77 6.98 -51.93 -0.36 0.41 16 20 C -0.08 -0.70 5.42 -28.18 -0.15 -0.85 16 21 C -0.15 -1.17 9.80 -35.90 -0.35 -1.52 16 22 C -0.16 -1.13 9.80 -35.90 -0.35 -1.48 16 23 C -0.09 -0.65 6.12 -28.17 -0.17 -0.82 16 24 C -0.10 -0.93 4.84 -26.51 -0.13 -1.06 16 25 C 0.11 1.51 6.40 -2.53 -0.02 1.50 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.36 8.00 5.40 -40.82 -0.22 7.78 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.03 0.57 8.11 -51.93 -0.42 0.15 16 30 H 0.08 1.08 8.01 -51.93 -0.42 0.66 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.59 7.73 -51.93 -0.40 0.19 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.13 7.99 -51.93 -0.41 0.71 16 43 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -32.74 342.21 -9.06 -41.79 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.31 Total: 4.34 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.17 Total: -5.00 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.11 Total: -54.29 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.74 -9.06 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731651811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.689 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds