Wall clock time and date at job start Tue Mar 31 2020 00:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 120.00101 * 2 1 4 4 H 1.48500 * 109.47068 * 270.00092 * 3 2 1 5 5 H 1.48497 * 109.46924 * 30.00305 * 3 2 1 6 6 H 1.48503 * 109.47177 * 150.00214 * 3 2 1 7 7 C 1.38812 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00128 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99874 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99754 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46992 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.89087 * 57.42678 * 11 10 9 13 13 C 1.55157 * 111.00362 * 293.54446 * 11 10 9 14 14 C 1.54321 * 102.94144 * 206.42384 * 13 11 10 15 15 N 1.47021 * 107.27342 * 22.19568 * 14 13 11 16 16 C 1.34776 * 125.65148 * 181.10602 * 15 14 13 17 17 O 1.21283 * 120.00186 * 174.89402 * 16 15 14 18 18 C 1.50705 * 119.99968 * 354.89188 * 16 15 14 19 19 H 1.09003 * 109.63968 * 334.37297 * 18 16 15 20 20 C 1.53026 * 109.64304 * 94.78724 * 18 16 15 21 21 C 1.50066 * 110.14870 * 169.12066 * 20 18 16 22 22 C 1.29444 * 124.07173 * 342.87395 * 21 20 18 23 23 C 1.50064 * 124.08261 * 0.48803 * 22 21 20 24 24 C 1.53044 * 110.13691 * 342.83428 * 23 22 21 25 25 C 1.47424 * 108.70307 * 1.05845 * 15 14 13 26 26 H 0.97006 * 119.99645 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00564 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47294 * 299.99694 * 10 9 7 29 29 H 1.09004 * 109.47434 * 59.99956 * 10 9 7 30 30 H 1.08999 * 110.72438 * 324.78635 * 13 11 10 31 31 H 1.09001 * 110.72350 * 87.88682 * 13 11 10 32 32 H 1.09004 * 109.88616 * 141.61116 * 14 13 11 33 33 H 1.09000 * 109.88645 * 262.77503 * 14 13 11 34 34 H 1.08997 * 109.36124 * 289.33353 * 20 18 16 35 35 H 1.09006 * 109.35562 * 49.05053 * 20 18 16 36 36 H 1.07998 * 117.96356 * 162.89050 * 21 20 18 37 37 H 1.08002 * 117.96145 * 180.46855 * 22 21 20 38 38 H 1.08998 * 109.35916 * 103.05155 * 23 22 21 39 39 H 1.08991 * 109.36215 * 222.64590 * 23 22 21 40 40 H 1.09005 * 109.65694 * 289.78055 * 24 23 22 41 41 H 1.09002 * 109.63858 * 169.13993 * 24 23 22 42 42 H 1.08996 * 110.36725 * 217.04016 * 25 15 14 43 43 H 1.08990 * 110.36923 * 94.71024 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1120 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0000 12 1 5.8983 -1.5813 0.8582 13 6 6.0573 -1.5208 -1.3279 14 6 7.5391 -1.9346 -1.4485 15 7 7.7228 -3.1432 -0.6317 16 6 8.8841 -3.8044 -0.4573 17 8 8.9400 -4.7390 0.3137 18 6 10.1133 -3.3827 -1.2205 19 1 9.8182 -2.8840 -2.1437 20 6 10.9479 -2.4277 -0.3642 21 6 12.2921 -2.2089 -0.9946 22 6 12.7988 -2.9752 -1.9065 23 6 12.1085 -4.1834 -2.4685 24 6 10.9670 -4.6151 -1.5450 25 6 6.4264 -3.5114 -0.0341 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0004 28 1 3.8484 -3.0427 0.8898 29 1 3.8491 -3.0423 -0.8902 30 1 5.4792 -1.9088 -2.1665 31 1 5.9608 -0.4370 -1.2634 32 1 7.7803 -2.1505 -2.4894 33 1 8.1789 -1.1346 -1.0759 34 1 10.4295 -1.4727 -0.2782 35 1 11.0822 -2.8565 0.6289 36 1 12.8730 -1.3595 -0.6668 37 1 13.7793 -2.7296 -2.2869 38 1 11.7064 -3.9445 -3.4530 39 1 12.8257 -4.9988 -2.5614 40 1 11.3771 -5.0295 -0.6240 41 1 10.3536 -5.3640 -2.0462 42 1 6.5696 -3.8947 0.9761 43 1 5.9197 -4.2515 -0.6533 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731651811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:47 Heat of formation + Delta-G solvation = -39.373634 kcal Electronic energy + Delta-G solvation = -21636.126847 eV Core-core repulsion = 18487.208320 eV Total energy + Delta-G solvation = -3148.918527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.49335 -39.48258 -38.25303 -36.58478 -34.06847 -32.69947 -31.87118 -31.57704 -30.37491 -27.45400 -25.18487 -24.14442 -23.83546 -23.19382 -21.50464 -20.16771 -19.64832 -18.92062 -18.17246 -17.34578 -16.94448 -16.56748 -16.22211 -15.69959 -15.41269 -14.92264 -14.89426 -14.71807 -14.53400 -14.18792 -14.07136 -13.93021 -13.57046 -13.37712 -13.25981 -13.19158 -13.02232 -12.78814 -12.23048 -12.08691 -12.00842 -11.80690 -11.78730 -11.66177 -11.62563 -11.37184 -10.96740 -10.72018 -9.87789 -9.70264 -9.30125 -8.01900 -5.36332 1.39089 1.39977 1.44141 1.51403 1.54414 1.91341 2.50117 3.25242 3.29584 3.51146 3.60770 3.73016 3.75640 3.87030 4.04886 4.18585 4.27766 4.28602 4.34727 4.38892 4.44660 4.49693 4.61077 4.61556 4.68221 4.76889 4.81726 4.90027 4.94752 5.01785 5.03637 5.06314 5.17449 5.21730 5.23161 5.34046 5.39018 5.75963 5.76635 6.05745 6.21474 6.47808 7.07363 7.08719 7.83085 8.04306 9.19733 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034883 B = 0.003277 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.491922 B = 8541.119647 C = 9016.057177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.248 1.248 7 C -0.237 4.237 8 H 0.053 0.947 9 N -0.753 5.753 10 C 0.167 3.833 11 C -0.100 4.100 12 H 0.084 0.916 13 C -0.123 4.123 14 C 0.103 3.897 15 N -0.617 5.617 16 C 0.528 3.472 17 O -0.587 6.587 18 C -0.095 4.095 19 H 0.112 0.888 20 C -0.077 4.077 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.089 4.089 24 C -0.102 4.102 25 C 0.115 3.885 26 H 0.258 0.742 27 H 0.368 0.632 28 H 0.021 0.979 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.931 -3.140 -6.896 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.226 1.226 6 H -0.173 1.173 7 C -0.368 4.368 8 H 0.071 0.929 9 N -0.399 5.399 10 C 0.040 3.960 11 C -0.120 4.120 12 H 0.103 0.897 13 C -0.161 4.161 14 C -0.019 4.019 15 N -0.350 5.350 16 C 0.319 3.681 17 O -0.467 6.467 18 C -0.116 4.116 19 H 0.130 0.870 20 C -0.114 4.114 21 C -0.180 4.180 22 C -0.173 4.173 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.008 4.008 26 H 0.067 0.933 27 H 0.202 0.798 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 28.845 -3.779 -6.492 29.807 hybrid contribution -0.526 0.783 0.398 1.024 sum 28.319 -2.996 -6.094 29.122 Atomic orbital electron populations 1.69901 1.07350 1.26799 1.59589 1.25581 0.96163 1.01582 1.02442 0.85353 0.78657 0.79043 0.78409 1.19754 1.22572 1.17279 1.19022 0.82777 0.93451 1.41577 0.92875 1.42587 1.02322 1.04037 1.90999 1.20621 0.89313 0.87608 0.98431 1.22401 0.93678 0.96323 0.99551 0.89717 1.22681 0.94511 1.01916 0.96969 1.22265 0.97160 0.86305 0.96183 1.48673 1.08004 1.29118 1.49188 1.20948 0.84011 0.81360 0.81816 1.90673 1.85320 1.31482 1.39262 1.21395 0.91516 0.99027 0.99703 0.86960 1.20331 0.94190 0.98898 0.98010 1.22033 0.96413 1.00710 0.98832 1.22270 1.00444 0.96367 0.98266 1.20504 0.96521 0.96771 0.98776 1.21459 0.96773 0.95576 1.00217 1.22085 0.83172 0.96700 0.98850 0.93313 0.79785 0.96091 0.95110 0.90283 0.89207 0.88938 0.89305 0.89508 0.91894 0.86253 0.86154 0.89357 0.89577 0.92469 0.91830 0.91543 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.07 13.97 21.65 0.30 -62.77 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.96 44.03 27.74 68.60 1.90 45.94 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.25 -10.09 6.52 99.48 0.65 -9.45 16 7 C -0.24 -13.44 10.47 84.03 0.88 -12.56 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 9 N -0.75 -33.89 5.26 -343.44 -1.81 -35.70 16 10 C 0.17 6.06 5.71 86.38 0.49 6.55 16 11 C -0.10 -2.71 3.10 -9.40 -0.03 -2.74 16 12 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 13 C -0.12 -2.69 6.13 31.78 0.19 -2.50 16 14 C 0.10 1.73 6.16 86.73 0.53 2.27 16 15 N -0.62 -14.18 3.33 -811.80 -2.70 -16.88 16 16 C 0.53 13.19 6.84 87.66 0.60 13.79 16 17 O -0.59 -19.73 16.64 -3.04 -0.05 -19.78 16 18 C -0.10 -1.64 2.20 -11.40 -0.03 -1.67 16 19 H 0.11 1.48 6.98 -2.39 -0.02 1.46 16 20 C -0.08 -1.19 5.42 29.66 0.16 -1.03 16 21 C -0.16 -2.04 9.80 27.04 0.27 -1.78 16 22 C -0.16 -1.77 9.80 27.04 0.27 -1.51 16 23 C -0.09 -1.02 6.12 29.66 0.18 -0.83 16 24 C -0.10 -1.74 4.84 30.74 0.15 -1.59 16 25 C 0.12 3.02 6.40 86.86 0.56 3.57 16 26 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 27 H 0.37 15.40 5.40 -92.71 -0.50 14.90 16 28 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.03 1.13 8.11 -2.39 -0.02 1.11 16 30 H 0.08 1.83 8.01 -2.39 -0.02 1.81 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.18 7.73 -2.38 -0.02 1.16 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.21 8.10 -2.38 -0.02 1.19 16 36 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.12 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 1.18 8.08 -2.38 -0.02 1.16 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.91 7.99 -2.39 -0.02 1.89 16 43 H 0.07 1.88 8.03 -2.39 -0.02 1.86 16 Total: -1.00 -72.55 342.21 2.76 -69.80 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.41 Total: 22.82 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 4.69 Total: -3.43 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -4.20 Total: -115.34 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.94 kcal Total: -72.55 2.76 -69.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731651811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.426 kcal (2) G-P(sol) polarization free energy of solvation -72.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds