Wall clock time and date at job start Tue Mar 31 2020 00:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86811 * 119.99867 * 2 1 4 4 H 1.48495 * 109.46848 * 239.99687 * 3 2 1 5 5 H 1.48501 * 109.46781 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47114 * 119.99494 * 3 2 1 7 7 C 1.38809 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99925 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00035 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47520 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.88437 * 51.11758 * 11 10 9 13 13 C 1.55161 * 111.03762 * 287.21784 * 11 10 9 14 14 C 1.54312 * 102.86122 * 206.21109 * 13 11 10 15 15 N 1.47019 * 107.27834 * 22.52384 * 14 13 11 16 16 C 1.34773 * 125.64686 * 180.96356 * 15 14 13 17 17 O 1.21280 * 119.99858 * 179.69388 * 16 15 14 18 18 C 1.50696 * 120.00144 * 359.69915 * 16 15 14 19 19 H 1.09001 * 115.52749 * 325.49276 * 18 16 15 20 20 C 1.53002 * 117.46366 * 110.95605 * 18 16 15 21 21 H 1.09000 * 119.29374 * 356.29342 * 20 18 16 22 22 C 1.54259 * 118.19867 * 201.21434 * 20 18 16 23 23 C 1.54888 * 104.19696 * 272.20842 * 22 20 18 24 24 C 1.54884 * 102.74784 * 37.94170 * 23 22 20 25 25 C 1.53006 * 117.45932 * 179.97438 * 18 16 15 26 26 H 1.08996 * 119.30104 * 3.70406 * 25 18 16 27 27 C 1.47429 * 108.70166 * 0.70782 * 15 14 13 28 28 H 0.97001 * 120.00195 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00034 * 359.97438 * 9 7 2 30 30 H 1.09008 * 109.47012 * 59.99914 * 10 9 7 31 31 H 1.09002 * 109.47639 * 300.00244 * 10 9 7 32 32 H 1.08999 * 110.71752 * 324.77026 * 13 11 10 33 33 H 1.09002 * 110.71676 * 87.86227 * 13 11 10 34 34 H 1.09005 * 109.98591 * 263.04515 * 14 13 11 35 35 H 1.09003 * 109.77293 * 141.88646 * 14 13 11 36 36 H 1.08994 * 110.49039 * 30.89076 * 22 20 18 37 37 H 1.09008 * 110.48579 * 153.53421 * 22 20 18 38 38 H 1.08996 * 110.75552 * 156.26080 * 23 22 20 39 39 H 1.08997 * 110.75677 * 279.63082 * 23 22 20 40 40 H 1.09004 * 110.49016 * 203.37595 * 24 23 22 41 41 H 1.09002 * 110.48719 * 80.73868 * 24 23 22 42 42 H 1.08994 * 110.36975 * 94.93148 * 27 15 14 43 43 H 1.09000 * 110.36233 * 217.25992 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3253 -4.6999 -0.7914 13 6 0.3768 -4.9643 1.3848 14 6 -0.0025 -6.4595 1.4254 15 7 0.8818 -7.1600 0.4826 16 6 0.8552 -8.4805 0.2141 17 8 1.6318 -8.9515 -0.5896 18 6 -0.1395 -9.3716 0.9122 19 1 -0.3722 -9.0996 1.9418 20 6 -1.2683 -9.9664 0.0678 21 1 -1.3548 -9.6844 -0.9815 22 6 -2.5437 -10.4468 0.7904 23 6 -2.2323 -11.9145 1.1752 24 6 -0.7358 -11.8542 1.5699 25 6 -0.1191 -10.8611 0.5630 26 1 0.6408 -11.2382 -0.1214 27 6 1.7982 -6.1779 -0.1248 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3880 0.0005 30 1 2.6849 -3.7144 0.8906 31 1 2.6849 -3.7145 -0.8894 32 1 1.0710 -4.7167 2.1879 33 1 -0.5139 -4.3383 1.4402 34 1 -1.0421 -6.5884 1.1241 35 1 0.1450 -6.8501 2.4322 36 1 -2.7247 -9.8485 1.6833 37 1 -3.4019 -10.4022 0.1197 38 1 -2.8427 -12.2298 2.0214 39 1 -2.3804 -12.5771 0.3225 40 1 -0.2745 -12.8365 1.4684 41 1 -0.6247 -11.4831 2.5888 42 1 2.7415 -6.1512 0.4207 43 1 1.9720 -6.4193 -1.1734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731652632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:10 Heat of formation + Delta-G solvation = -6.605617 kcal Electronic energy + Delta-G solvation = -21341.996843 eV Core-core repulsion = 18194.499244 eV Total energy + Delta-G solvation = -3147.497599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.63853 -39.08383 -37.35968 -34.68226 -32.43082 -31.84543 -30.19726 -29.07129 -28.55517 -25.97033 -24.08706 -22.57849 -22.31892 -20.91048 -20.08105 -19.95074 -19.11694 -17.48851 -17.00551 -16.31311 -15.89850 -15.20275 -14.89237 -14.52830 -14.13212 -13.67365 -13.51022 -13.46575 -13.18976 -13.05145 -12.72680 -12.57493 -12.45489 -11.76016 -11.66842 -11.58657 -11.46353 -11.20096 -11.16841 -10.85744 -10.68622 -10.50136 -10.42109 -10.34981 -10.12415 -10.08230 -9.77383 -9.67662 -8.88604 -8.61569 -6.94296 -5.78153 -3.06879 2.38036 2.88187 3.43717 3.48073 3.48477 3.49035 4.10928 4.39713 4.43972 4.53510 4.65414 4.75901 4.86004 4.90230 4.94932 5.07395 5.12073 5.13734 5.26793 5.32695 5.39106 5.47899 5.50781 5.55863 5.65096 5.69430 5.74110 5.77246 5.89430 5.97323 6.02196 6.03508 6.07662 6.11914 6.22887 6.37962 6.43375 6.71587 6.83184 7.52378 7.68530 8.14387 8.40768 9.52104 10.09008 10.44026 11.44706 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.002841 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.862292 B = 9854.950449 C =10228.692718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.085 0.915 13 C -0.122 4.122 14 C 0.100 3.900 15 N -0.612 5.612 16 C 0.557 3.443 17 O -0.545 6.545 18 C -0.157 4.157 19 H 0.119 0.881 20 C -0.138 4.138 21 H 0.114 0.886 22 C -0.096 4.096 23 C -0.123 4.123 24 C -0.097 4.097 25 C -0.132 4.132 26 H 0.121 0.879 27 C 0.113 3.887 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 -22.753 4.718 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.159 4.159 14 C -0.022 4.022 15 N -0.345 5.345 16 C 0.346 3.654 17 O -0.423 6.423 18 C -0.178 4.178 19 H 0.137 0.863 20 C -0.156 4.156 21 H 0.132 0.868 22 C -0.134 4.134 23 C -0.161 4.161 24 C -0.134 4.134 25 C -0.151 4.151 26 H 0.139 0.861 27 C -0.010 4.010 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.616 -22.963 4.279 23.810 hybrid contribution 0.175 1.158 0.048 1.172 sum -4.441 -21.805 4.327 22.669 Atomic orbital electron populations 1.69642 1.05112 1.25795 1.57737 1.24735 0.95532 0.97697 1.02982 0.86258 0.78518 0.83478 0.77874 1.21256 1.21687 1.21257 1.19184 0.91038 0.84124 1.42786 0.91208 1.42299 1.05843 0.99817 1.89557 1.20551 0.92757 0.84876 0.98176 1.22574 0.98628 0.93670 0.97618 0.89679 1.22664 1.02156 0.93056 0.98061 1.22136 0.94083 0.93471 0.92547 1.48440 1.36427 1.06445 1.43203 1.19214 0.83753 0.80716 0.81733 1.90688 1.42000 1.74001 1.35625 1.22325 0.99866 0.95092 1.00553 0.86298 1.23238 0.90141 1.03009 0.99236 0.86796 1.22004 0.95681 0.95733 0.99934 1.22700 0.95656 0.96555 1.01165 1.22005 0.94925 0.98401 0.98071 1.23268 1.01116 0.88913 1.01791 0.86056 1.22270 0.92763 0.86974 0.98969 0.93456 0.78244 0.95948 0.96008 0.90239 0.89450 0.91326 0.91649 0.91063 0.90792 0.91134 0.91121 0.90848 0.91219 0.91168 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.12 5.55 -59.90 -0.33 -18.45 16 10 C 0.16 3.22 5.72 -4.04 -0.02 3.19 16 11 C -0.11 -1.66 3.04 -88.47 -0.27 -1.93 16 12 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.12 -1.67 6.37 -24.90 -0.16 -1.83 16 14 C 0.10 1.16 6.28 -3.07 -0.02 1.14 16 15 N -0.61 -8.40 3.33 -170.53 -0.57 -8.97 16 16 C 0.56 8.01 7.63 -10.99 -0.08 7.92 16 17 O -0.55 -9.71 16.58 5.56 0.09 -9.62 16 18 C -0.16 -1.70 5.08 -91.77 -0.47 -2.16 16 19 H 0.12 1.09 7.74 -51.93 -0.40 0.69 16 20 C -0.14 -1.31 6.64 -89.53 -0.59 -1.91 16 21 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 22 C -0.10 -0.69 6.62 -25.08 -0.17 -0.86 16 23 C -0.12 -0.78 6.91 -24.74 -0.17 -0.95 16 24 C -0.10 -0.70 6.63 -25.07 -0.17 -0.87 16 25 C -0.13 -1.30 6.39 -89.51 -0.57 -1.88 16 26 H 0.12 1.38 7.78 -51.93 -0.40 0.97 16 27 C 0.11 1.66 6.38 -2.53 -0.02 1.64 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 29 H 0.38 9.91 7.67 -40.82 -0.31 9.60 16 30 H 0.02 0.44 7.97 -51.92 -0.41 0.03 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 43 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -31.92 347.47 -10.22 -42.14 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.39 Total: 5.39 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.95 Total: -5.78 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.18 Total: -54.63 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.92 -10.22 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731652632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.532 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds