Wall clock time and date at job start Tue Mar 31 2020 00:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86811 * 119.99867 * 2 1 4 4 H 1.48495 * 109.46848 * 239.99687 * 3 2 1 5 5 H 1.48501 * 109.46781 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47114 * 119.99494 * 3 2 1 7 7 C 1.38809 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99925 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00035 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47520 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.88437 * 51.11758 * 11 10 9 13 13 C 1.55161 * 111.03762 * 287.21784 * 11 10 9 14 14 C 1.54312 * 102.86122 * 206.21109 * 13 11 10 15 15 N 1.47019 * 107.27834 * 22.52384 * 14 13 11 16 16 C 1.34773 * 125.64686 * 180.96356 * 15 14 13 17 17 O 1.21280 * 119.99858 * 179.69388 * 16 15 14 18 18 C 1.50696 * 120.00144 * 359.69915 * 16 15 14 19 19 H 1.09001 * 115.52749 * 325.49276 * 18 16 15 20 20 C 1.53002 * 117.46366 * 110.95605 * 18 16 15 21 21 H 1.09000 * 119.29374 * 356.29342 * 20 18 16 22 22 C 1.54259 * 118.19867 * 201.21434 * 20 18 16 23 23 C 1.54888 * 104.19696 * 272.20842 * 22 20 18 24 24 C 1.54884 * 102.74784 * 37.94170 * 23 22 20 25 25 C 1.53006 * 117.45932 * 179.97438 * 18 16 15 26 26 H 1.08996 * 119.30104 * 3.70406 * 25 18 16 27 27 C 1.47429 * 108.70166 * 0.70782 * 15 14 13 28 28 H 0.97001 * 120.00195 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00034 * 359.97438 * 9 7 2 30 30 H 1.09008 * 109.47012 * 59.99914 * 10 9 7 31 31 H 1.09002 * 109.47639 * 300.00244 * 10 9 7 32 32 H 1.08999 * 110.71752 * 324.77026 * 13 11 10 33 33 H 1.09002 * 110.71676 * 87.86227 * 13 11 10 34 34 H 1.09005 * 109.98591 * 263.04515 * 14 13 11 35 35 H 1.09003 * 109.77293 * 141.88646 * 14 13 11 36 36 H 1.08994 * 110.49039 * 30.89076 * 22 20 18 37 37 H 1.09008 * 110.48579 * 153.53421 * 22 20 18 38 38 H 1.08996 * 110.75552 * 156.26080 * 23 22 20 39 39 H 1.08997 * 110.75677 * 279.63082 * 23 22 20 40 40 H 1.09004 * 110.49016 * 203.37595 * 24 23 22 41 41 H 1.09002 * 110.48719 * 80.73868 * 24 23 22 42 42 H 1.08994 * 110.36975 * 94.93148 * 27 15 14 43 43 H 1.09000 * 110.36233 * 217.25992 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3253 -4.6999 -0.7914 13 6 0.3768 -4.9643 1.3848 14 6 -0.0025 -6.4595 1.4254 15 7 0.8818 -7.1600 0.4826 16 6 0.8552 -8.4805 0.2141 17 8 1.6318 -8.9515 -0.5896 18 6 -0.1395 -9.3716 0.9122 19 1 -0.3722 -9.0996 1.9418 20 6 -1.2683 -9.9664 0.0678 21 1 -1.3548 -9.6844 -0.9815 22 6 -2.5437 -10.4468 0.7904 23 6 -2.2323 -11.9145 1.1752 24 6 -0.7358 -11.8542 1.5699 25 6 -0.1191 -10.8611 0.5630 26 1 0.6408 -11.2382 -0.1214 27 6 1.7982 -6.1779 -0.1248 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3880 0.0005 30 1 2.6849 -3.7144 0.8906 31 1 2.6849 -3.7145 -0.8894 32 1 1.0710 -4.7167 2.1879 33 1 -0.5139 -4.3383 1.4402 34 1 -1.0421 -6.5884 1.1241 35 1 0.1450 -6.8501 2.4322 36 1 -2.7247 -9.8485 1.6833 37 1 -3.4019 -10.4022 0.1197 38 1 -2.8427 -12.2298 2.0214 39 1 -2.3804 -12.5771 0.3225 40 1 -0.2745 -12.8365 1.4684 41 1 -0.6247 -11.4831 2.5888 42 1 2.7415 -6.1512 0.4207 43 1 1.9720 -6.4193 -1.1734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731652632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:09 Heat of formation + Delta-G solvation = -25.244701 kcal Electronic energy + Delta-G solvation = -21342.805094 eV Core-core repulsion = 18194.499244 eV Total energy + Delta-G solvation = -3148.305850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.60247 -40.03465 -38.55243 -36.45476 -33.98375 -32.75697 -31.76119 -30.31911 -29.13755 -27.49731 -25.49572 -23.98948 -23.55149 -21.55322 -21.39412 -20.67638 -20.12256 -19.16755 -18.38744 -17.50059 -16.94311 -16.55865 -15.94185 -15.74337 -15.29026 -15.24065 -14.93763 -14.76445 -14.08988 -14.03865 -13.96021 -13.79558 -13.69091 -13.01745 -12.97094 -12.73459 -12.45327 -12.29376 -12.25996 -12.12857 -11.98215 -11.80380 -11.71306 -11.67818 -11.64829 -11.14915 -11.04175 -10.92213 -10.64371 -9.73901 -8.99923 -7.94935 -5.23582 1.33487 1.48370 1.51012 1.57077 1.82756 2.56466 2.67933 3.24007 3.38783 3.54632 3.62187 3.69753 3.74523 3.85449 3.97908 4.19588 4.24118 4.26039 4.28783 4.41645 4.48266 4.52209 4.54227 4.60793 4.67106 4.77009 4.80823 4.82582 4.94914 5.01752 5.05089 5.14515 5.21717 5.22667 5.22848 5.25802 5.28654 5.38165 5.50084 5.50921 6.27233 6.43904 7.02849 7.34373 8.08702 8.33413 9.28257 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.002841 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.862292 B = 9854.950449 C =10228.692718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.741 5.741 10 C 0.165 3.835 11 C -0.097 4.097 12 H 0.075 0.925 13 C -0.117 4.117 14 C 0.106 3.894 15 N -0.613 5.613 16 C 0.550 3.450 17 O -0.590 6.590 18 C -0.160 4.160 19 H 0.143 0.857 20 C -0.134 4.134 21 H 0.098 0.902 22 C -0.092 4.092 23 C -0.119 4.119 24 C -0.092 4.092 25 C -0.138 4.138 26 H 0.098 0.902 27 C 0.118 3.882 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.029 0.971 31 H 0.017 0.983 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 -23.772 6.277 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.038 3.962 11 C -0.116 4.116 12 H 0.093 0.907 13 C -0.155 4.155 14 C -0.015 4.015 15 N -0.345 5.345 16 C 0.341 3.659 17 O -0.471 6.471 18 C -0.181 4.181 19 H 0.161 0.839 20 C -0.153 4.153 21 H 0.116 0.884 22 C -0.129 4.129 23 C -0.156 4.156 24 C -0.129 4.129 25 C -0.157 4.157 26 H 0.116 0.884 27 C -0.005 4.005 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.274 -24.002 5.855 25.262 hybrid contribution 0.445 1.434 -0.489 1.579 sum -4.830 -22.568 5.366 23.694 Atomic orbital electron populations 1.69791 1.06498 1.26197 1.59307 1.25537 0.96414 1.00990 1.03589 0.85230 0.77237 0.79241 0.78153 1.20644 1.22060 1.20296 1.19580 0.91497 0.85368 1.41514 0.90801 1.42463 1.05678 1.00848 1.89448 1.20645 0.93333 0.84271 0.97940 1.22348 0.97711 0.92685 0.98865 0.90688 1.22608 1.01641 0.94825 0.96389 1.22223 0.94369 0.91434 0.93498 1.48521 1.36374 1.06343 1.43263 1.19896 0.83805 0.80951 0.81249 1.90663 1.43931 1.74782 1.37698 1.22332 0.99551 0.94857 1.01326 0.83938 1.23332 0.91243 1.02143 0.98610 0.88386 1.22048 0.94363 0.96296 1.00201 1.22703 0.95057 0.95944 1.01911 1.22036 0.95359 0.97856 0.97657 1.23337 1.00863 0.89107 1.02377 0.88380 1.22099 0.93163 0.86694 0.98580 0.93930 0.79162 0.95356 0.96466 0.90346 0.89926 0.89656 0.88850 0.89927 0.90069 0.89258 0.91101 0.90197 0.90211 0.90755 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.37 13.06 21.65 0.28 -58.08 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.97 45.79 29.55 68.60 2.03 47.81 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -36.99 5.55 -343.44 -1.91 -38.89 16 10 C 0.16 6.46 5.72 86.38 0.49 6.95 16 11 C -0.10 -3.02 3.04 -9.40 -0.03 -3.05 16 12 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 13 C -0.12 -3.07 6.37 31.78 0.20 -2.86 16 14 C 0.11 2.20 6.28 86.73 0.54 2.74 16 15 N -0.61 -16.17 3.33 -811.83 -2.70 -18.87 16 16 C 0.55 15.56 7.63 87.66 0.67 16.23 16 17 O -0.59 -21.53 16.58 -3.03 -0.05 -21.58 16 18 C -0.16 -3.19 5.08 -11.54 -0.06 -3.24 16 19 H 0.14 2.14 7.74 -2.39 -0.02 2.12 16 20 C -0.13 -2.38 6.64 -10.09 -0.07 -2.45 16 21 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 22 C -0.09 -1.05 6.62 31.67 0.21 -0.84 16 23 C -0.12 -1.14 6.91 31.88 0.22 -0.92 16 24 C -0.09 -1.10 6.63 31.67 0.21 -0.89 16 25 C -0.14 -2.59 6.39 -10.08 -0.06 -2.65 16 26 H 0.10 2.29 7.78 -2.39 -0.02 2.27 16 27 C 0.12 3.44 6.38 86.85 0.55 4.00 16 28 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.38 19.70 7.67 -92.71 -0.71 18.99 16 30 H 0.03 1.09 7.97 -2.38 -0.02 1.07 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 2.09 7.92 -2.39 -0.02 2.07 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.09 1.48 8.06 -2.39 -0.02 1.46 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.83 8.14 -2.38 -0.02 0.82 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 2.11 8.04 -2.39 -0.02 2.09 16 43 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 Total: -1.00 -68.99 347.47 2.11 -66.88 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.27 Total: 26.32 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.19 Total: -3.59 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -4.32 Total: -115.85 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.58 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -68.99 2.11 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731652632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.633 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds