Wall clock time and date at job start Mon Mar 30 2020 23:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99855 * 2 1 4 4 H 1.48504 * 109.46867 * 269.99443 * 3 2 1 5 5 H 1.48498 * 109.47419 * 29.99348 * 3 2 1 6 6 H 1.48495 * 109.47123 * 149.99828 * 3 2 1 7 7 C 1.38810 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99419 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00057 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47062 * 174.95352 * 10 9 7 12 12 N 1.46495 * 110.43988 * 307.76131 * 11 10 9 13 13 C 1.34771 * 120.00168 * 303.00574 * 12 11 10 14 14 O 1.21279 * 120.00174 * 354.54731 * 13 12 11 15 15 C 1.50699 * 120.00137 * 174.55452 * 13 12 11 16 16 H 1.08997 * 115.54888 * 325.57797 * 15 13 12 17 17 C 1.53001 * 117.52092 * 111.28120 * 15 13 12 18 18 C 1.52991 * 117.50099 * 179.90960 * 15 13 12 19 19 C 1.52992 * 138.59261 * 121.58913 * 18 15 13 20 20 C 1.52996 * 60.00237 * 229.11091 * 19 18 15 21 21 C 1.54892 * 110.48509 * 70.30885 * 11 10 9 22 22 C 1.55235 * 102.58832 * 156.67430 * 21 11 10 23 23 C 1.54262 * 104.23184 * 322.08119 * 22 21 11 24 24 C 1.53876 * 106.60123 * 23.61093 * 23 22 21 25 25 H 0.97002 * 120.00031 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00147 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.46768 * 54.95478 * 10 9 7 28 28 H 1.08996 * 109.47153 * 294.95983 * 10 9 7 29 29 H 0.97004 * 120.00055 * 122.99443 * 12 11 10 30 30 H 1.08998 * 117.49920 * 214.96690 * 17 15 13 31 31 H 1.09003 * 117.50128 * 359.97438 * 17 15 13 32 32 H 1.09005 * 117.49632 * 336.60188 * 19 18 15 33 33 H 1.08999 * 117.50299 * 121.62121 * 19 18 15 34 34 H 1.08996 * 117.49971 * 252.51200 * 20 19 18 35 35 H 1.08996 * 117.52248 * 107.47857 * 20 19 18 36 36 H 1.09004 * 110.75443 * 275.06505 * 21 11 10 37 37 H 1.08994 * 110.75721 * 38.43040 * 21 11 10 38 38 H 1.09004 * 110.46973 * 203.39077 * 22 21 11 39 39 H 1.09001 * 110.58614 * 80.82685 * 22 21 11 40 40 H 1.09007 * 110.03424 * 264.32459 * 23 22 21 41 41 H 1.09001 * 110.03446 * 142.90023 * 23 22 21 42 42 H 1.08994 * 110.03562 * 240.71779 * 24 23 22 43 43 H 1.08999 * 110.03364 * 119.27954 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0685 -4.8168 0.1283 12 7 0.1815 -4.6096 1.2756 13 6 0.7013 -4.4431 2.5079 14 8 1.8952 -4.5630 2.6837 15 6 -0.2011 -4.1082 3.6674 16 1 -1.0549 -3.4734 3.4305 17 6 -0.3928 -5.1766 4.7457 18 6 0.4491 -3.9339 5.0412 19 6 0.5704 -2.8614 6.1256 20 6 1.8201 -3.5893 5.6264 21 6 0.2439 -4.9704 -1.1738 22 6 -0.2066 -6.4548 -1.1158 23 6 1.0107 -7.1979 -0.5280 24 6 1.8216 -6.1565 0.2630 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3880 0.0005 27 1 2.7501 -3.6760 0.8436 28 1 2.6159 -3.7551 -0.9295 29 1 -0.7800 -4.5921 1.1484 30 1 -1.3727 -5.2447 5.2182 31 1 0.1335 -6.1224 4.6164 32 1 0.4384 -1.8225 5.8229 33 1 0.2074 -3.1105 7.1227 34 1 2.2793 -4.3173 6.2951 35 1 2.5105 -3.0298 4.9952 36 1 -0.6173 -4.3022 -1.1667 37 1 0.8672 -4.7896 -2.0494 38 1 -0.4324 -6.8241 -2.1162 39 1 -1.0732 -6.5672 -0.4642 40 1 1.6190 -7.6126 -1.3319 41 1 0.6767 -7.9945 0.1369 42 1 2.8232 -6.0656 -0.1570 43 1 1.8809 -6.4475 1.3118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732235267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:35 Heat of formation + Delta-G solvation = 27.390207 kcal Electronic energy + Delta-G solvation = -22723.947702 eV Core-core repulsion = 19577.924272 eV Total energy + Delta-G solvation = -3146.023430 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.06312 -38.33094 -36.57597 -34.25542 -32.97166 -32.30622 -30.90284 -28.57644 -28.10796 -24.56702 -23.81921 -22.20331 -22.13412 -20.66656 -20.23891 -18.90538 -18.80097 -17.03610 -16.72810 -15.82898 -15.01913 -14.90051 -14.77129 -14.53540 -14.24590 -13.90408 -13.77971 -13.11438 -12.86797 -12.58829 -12.26361 -12.01960 -11.60930 -11.32922 -11.24490 -11.21947 -11.02441 -10.86045 -10.78985 -10.66087 -10.33077 -10.28056 -10.03298 -9.96914 -9.88943 -9.81075 -9.63413 -9.13030 -8.72649 -8.41078 -6.79570 -5.69521 -2.95132 2.98018 3.47101 3.49456 3.52836 3.55015 3.94227 4.03689 4.48892 4.63971 4.76950 4.85953 4.95818 5.00658 5.08032 5.43354 5.57196 5.59156 5.64735 5.67260 5.69098 5.76720 5.77024 5.80682 5.80890 5.84123 5.98670 6.02374 6.06710 6.09512 6.13567 6.24852 6.36381 6.40734 6.43792 6.47995 6.62563 6.67598 7.00008 7.23557 7.78385 8.07962 8.50257 8.83696 9.61680 10.20603 10.56878 11.53722 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.007761 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.235025 B = 3607.130405 C = 5566.706329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.227 4.227 8 H 0.067 0.933 9 N -0.724 5.724 10 C 0.145 3.855 11 C 0.171 3.829 12 N -0.706 5.706 13 C 0.554 3.446 14 O -0.530 6.530 15 C -0.135 4.135 16 H 0.122 0.878 17 C -0.106 4.106 18 C -0.197 4.197 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.123 4.123 25 H 0.252 0.748 26 H 0.382 0.618 27 H 0.044 0.956 28 H 0.019 0.981 29 H 0.395 0.605 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.307 -14.180 5.696 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.212 4.212 3 Si 0.735 3.265 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.359 4.359 8 H 0.085 0.915 9 N -0.368 5.368 10 C 0.017 3.983 11 C 0.085 3.915 12 N -0.356 5.356 13 C 0.340 3.660 14 O -0.406 6.406 15 C -0.156 4.156 16 H 0.140 0.860 17 C -0.144 4.144 18 C -0.198 4.198 19 C -0.169 4.169 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.160 4.160 24 C -0.162 4.162 25 H 0.062 0.938 26 H 0.215 0.785 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.228 0.772 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.277 -14.134 5.812 15.451 hybrid contribution -0.423 1.148 -0.193 1.238 sum -2.700 -12.986 5.619 14.405 Atomic orbital electron populations 1.69651 1.04969 1.25288 1.58702 1.24664 0.95509 0.97415 1.03606 0.86221 0.78718 0.84097 0.77421 1.21877 1.21898 1.20887 1.19237 0.90990 0.84262 1.41412 0.91465 1.42182 1.05613 0.99683 1.89279 1.21054 0.93552 0.85135 0.98572 1.21332 0.90611 0.94827 0.84763 1.45719 1.09591 1.73848 1.06484 1.19328 0.88039 0.75796 0.82855 1.90630 1.15556 1.50030 1.84356 1.21992 1.01360 1.03724 0.88514 0.85974 1.22622 1.00125 0.92356 0.99268 1.21067 1.02211 1.00503 0.96003 1.22746 1.01648 0.96390 0.96147 1.22562 0.89659 1.01640 1.01047 1.22789 1.00253 0.95675 0.96984 1.22453 0.97715 0.95662 1.00409 1.22129 0.96814 0.97916 0.99105 1.22441 0.98891 0.93819 1.01087 0.93801 0.78476 0.93791 0.96346 0.77164 0.88087 0.88477 0.88405 0.88724 0.88963 0.87959 0.90613 0.89892 0.91884 0.91943 0.92135 0.92443 0.91196 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.44 13.06 55.49 0.72 -27.71 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.90 23.15 29.55 -169.99 -5.02 18.13 16 4 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.60 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -18.68 5.30 -59.91 -0.32 -18.99 16 10 C 0.15 3.17 4.72 -4.04 -0.02 3.15 16 11 C 0.17 2.88 0.39 -130.16 -0.05 2.83 16 12 N -0.71 -11.53 4.54 -46.08 -0.21 -11.74 16 13 C 0.55 10.01 6.85 -10.99 -0.08 9.93 16 14 O -0.53 -11.19 13.21 5.56 0.07 -11.12 16 15 C -0.13 -2.08 6.19 -91.78 -0.57 -2.65 16 16 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 17 C -0.11 -1.31 10.24 -26.73 -0.27 -1.59 16 18 C -0.20 -2.94 5.05 -154.52 -0.78 -3.72 16 19 C -0.13 -1.74 10.53 -26.74 -0.28 -2.03 16 20 C -0.11 -1.65 10.16 -26.73 -0.27 -1.93 16 21 C -0.12 -1.76 5.67 -24.55 -0.14 -1.90 16 22 C -0.12 -1.46 6.80 -24.89 -0.17 -1.63 16 23 C -0.12 -1.46 6.80 -25.61 -0.17 -1.63 16 24 C -0.12 -1.85 5.68 -25.61 -0.15 -2.00 16 25 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.38 10.09 7.27 -40.82 -0.30 9.80 16 27 H 0.04 1.08 6.49 -51.93 -0.34 0.74 16 28 H 0.02 0.41 8.02 -51.93 -0.42 -0.01 16 29 H 0.39 5.56 8.50 -40.82 -0.35 5.21 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 37 H 0.08 1.26 7.97 -51.93 -0.41 0.85 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 43 H 0.07 1.20 6.63 -51.93 -0.34 0.85 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -32.91 348.07 -9.88 -42.79 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -7.18 Total: 13.89 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.20 Total: -10.49 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.20 Total: -58.44 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.91 -9.88 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732235267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.184 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds