Wall clock time and date at job start Mon Mar 30 2020 23:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99855 * 2 1 4 4 H 1.48504 * 109.46867 * 269.99443 * 3 2 1 5 5 H 1.48498 * 109.47419 * 29.99348 * 3 2 1 6 6 H 1.48495 * 109.47123 * 149.99828 * 3 2 1 7 7 C 1.38810 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99419 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00057 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47062 * 174.95352 * 10 9 7 12 12 N 1.46495 * 110.43988 * 307.76131 * 11 10 9 13 13 C 1.34771 * 120.00168 * 303.00574 * 12 11 10 14 14 O 1.21279 * 120.00174 * 354.54731 * 13 12 11 15 15 C 1.50699 * 120.00137 * 174.55452 * 13 12 11 16 16 H 1.08997 * 115.54888 * 325.57797 * 15 13 12 17 17 C 1.53001 * 117.52092 * 111.28120 * 15 13 12 18 18 C 1.52991 * 117.50099 * 179.90960 * 15 13 12 19 19 C 1.52992 * 138.59261 * 121.58913 * 18 15 13 20 20 C 1.52996 * 60.00237 * 229.11091 * 19 18 15 21 21 C 1.54892 * 110.48509 * 70.30885 * 11 10 9 22 22 C 1.55235 * 102.58832 * 156.67430 * 21 11 10 23 23 C 1.54262 * 104.23184 * 322.08119 * 22 21 11 24 24 C 1.53876 * 106.60123 * 23.61093 * 23 22 21 25 25 H 0.97002 * 120.00031 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00147 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.46768 * 54.95478 * 10 9 7 28 28 H 1.08996 * 109.47153 * 294.95983 * 10 9 7 29 29 H 0.97004 * 120.00055 * 122.99443 * 12 11 10 30 30 H 1.08998 * 117.49920 * 214.96690 * 17 15 13 31 31 H 1.09003 * 117.50128 * 359.97438 * 17 15 13 32 32 H 1.09005 * 117.49632 * 336.60188 * 19 18 15 33 33 H 1.08999 * 117.50299 * 121.62121 * 19 18 15 34 34 H 1.08996 * 117.49971 * 252.51200 * 20 19 18 35 35 H 1.08996 * 117.52248 * 107.47857 * 20 19 18 36 36 H 1.09004 * 110.75443 * 275.06505 * 21 11 10 37 37 H 1.08994 * 110.75721 * 38.43040 * 21 11 10 38 38 H 1.09004 * 110.46973 * 203.39077 * 22 21 11 39 39 H 1.09001 * 110.58614 * 80.82685 * 22 21 11 40 40 H 1.09007 * 110.03424 * 264.32459 * 23 22 21 41 41 H 1.09001 * 110.03446 * 142.90023 * 23 22 21 42 42 H 1.08994 * 110.03562 * 240.71779 * 24 23 22 43 43 H 1.08999 * 110.03364 * 119.27954 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0685 -4.8168 0.1283 12 7 0.1815 -4.6096 1.2756 13 6 0.7013 -4.4431 2.5079 14 8 1.8952 -4.5630 2.6837 15 6 -0.2011 -4.1082 3.6674 16 1 -1.0549 -3.4734 3.4305 17 6 -0.3928 -5.1766 4.7457 18 6 0.4491 -3.9339 5.0412 19 6 0.5704 -2.8614 6.1256 20 6 1.8201 -3.5893 5.6264 21 6 0.2439 -4.9704 -1.1738 22 6 -0.2066 -6.4548 -1.1158 23 6 1.0107 -7.1979 -0.5280 24 6 1.8216 -6.1565 0.2630 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3880 0.0005 27 1 2.7501 -3.6760 0.8436 28 1 2.6159 -3.7551 -0.9295 29 1 -0.7800 -4.5921 1.1484 30 1 -1.3727 -5.2447 5.2182 31 1 0.1335 -6.1224 4.6164 32 1 0.4384 -1.8225 5.8229 33 1 0.2074 -3.1105 7.1227 34 1 2.2793 -4.3173 6.2951 35 1 2.5105 -3.0298 4.9952 36 1 -0.6173 -4.3022 -1.1667 37 1 0.8672 -4.7896 -2.0494 38 1 -0.4324 -6.8241 -2.1162 39 1 -1.0732 -6.5672 -0.4642 40 1 1.6190 -7.6126 -1.3319 41 1 0.6767 -7.9945 0.1369 42 1 2.8232 -6.0656 -0.1570 43 1 1.8809 -6.4475 1.3118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732235267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:34 Heat of formation + Delta-G solvation = 6.755696 kcal Electronic energy + Delta-G solvation = -22724.842482 eV Core-core repulsion = 19577.924272 eV Total energy + Delta-G solvation = -3146.918209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42320 -39.53542 -37.85764 -36.20565 -34.38173 -33.54852 -32.85640 -29.85223 -29.58270 -26.42491 -25.09367 -23.98574 -23.30571 -21.86443 -21.33404 -20.33508 -20.02596 -19.14825 -18.03521 -17.25306 -16.51443 -16.20622 -16.05526 -15.91025 -15.68748 -15.34663 -15.11794 -15.08869 -14.39198 -14.04490 -13.78427 -13.39776 -13.21874 -12.84004 -12.70218 -12.45487 -12.38132 -12.36740 -12.21195 -12.08156 -11.92820 -11.77072 -11.64769 -11.28897 -11.16281 -11.01377 -10.99208 -10.91476 -10.44360 -9.84259 -8.96909 -7.97253 -5.23280 1.41517 1.42979 1.51525 1.64932 2.23422 2.52677 2.78134 2.88312 3.35046 3.37046 3.52359 3.70932 3.81649 3.89839 3.97021 4.17266 4.21219 4.41174 4.48672 4.56226 4.60278 4.65863 4.69348 4.72248 4.75873 4.81651 4.84274 4.91041 4.92754 4.98960 5.06443 5.08295 5.12752 5.16765 5.26117 5.30918 5.35065 5.43559 5.52192 5.80389 6.25400 6.75113 7.32613 7.46875 8.07174 8.36572 9.25490 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.007761 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.235025 B = 3607.130405 C = 5566.706329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.060 0.940 9 N -0.726 5.726 10 C 0.147 3.853 11 C 0.171 3.829 12 N -0.698 5.698 13 C 0.544 3.456 14 O -0.569 6.569 15 C -0.159 4.159 16 H 0.126 0.874 17 C -0.066 4.066 18 C -0.227 4.227 19 C -0.112 4.112 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.113 4.113 24 C -0.118 4.118 25 H 0.251 0.749 26 H 0.377 0.623 27 H 0.012 0.988 28 H 0.017 0.983 29 H 0.407 0.593 30 H 0.137 0.863 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 -15.568 6.069 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.078 0.922 9 N -0.369 5.369 10 C 0.019 3.981 11 C 0.085 3.915 12 N -0.349 5.349 13 C 0.332 3.668 14 O -0.449 6.449 15 C -0.180 4.180 16 H 0.144 0.856 17 C -0.103 4.103 18 C -0.228 4.228 19 C -0.149 4.149 20 C -0.165 4.165 21 C -0.154 4.154 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.157 4.157 25 H 0.060 0.940 26 H 0.210 0.790 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.242 0.758 30 H 0.154 0.846 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.147 0.853 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.736 -15.546 6.169 17.137 hybrid contribution 0.102 1.600 -0.319 1.635 sum -3.634 -13.945 5.849 15.553 Atomic orbital electron populations 1.69779 1.06066 1.25879 1.59413 1.25407 0.96476 1.00429 1.03732 0.85240 0.77534 0.80017 0.77585 1.21002 1.21660 1.20548 1.19510 0.90983 0.85844 1.41360 0.92243 1.42217 1.05405 1.00235 1.89057 1.21095 0.94313 0.85730 0.96922 1.21278 0.90391 0.93564 0.86276 1.45672 1.10161 1.73093 1.05942 1.19911 0.87982 0.75056 0.83889 1.90610 1.17311 1.51892 1.85054 1.22019 1.01354 1.06424 0.88162 0.85622 1.22741 1.00960 0.90933 0.95700 1.21417 1.02430 1.02886 0.96037 1.22803 0.99651 0.95299 0.97149 1.22506 0.89754 1.02666 1.01581 1.22749 0.99351 0.98209 0.95140 1.22411 0.97841 0.92671 1.02053 1.22094 0.96553 0.97115 0.99330 1.22368 0.98943 0.93669 1.00759 0.93983 0.78979 0.96976 0.96479 0.75773 0.84552 0.88191 0.89653 0.85322 0.87023 0.91683 0.91451 0.90585 0.89679 0.90592 0.90644 0.90849 0.92042 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.98 13.06 21.65 0.28 -58.70 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.97 48.17 29.55 68.60 2.03 50.19 16 4 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.24 -14.62 9.99 84.03 0.84 -13.78 16 8 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.73 -38.75 5.30 -343.46 -1.82 -40.57 16 10 C 0.15 6.70 4.72 86.38 0.41 7.11 16 11 C 0.17 5.85 0.39 4.68 0.00 5.85 16 12 N -0.70 -22.96 4.54 -418.09 -1.90 -24.86 16 13 C 0.54 20.13 6.85 87.66 0.60 20.73 16 14 O -0.57 -25.25 13.21 -3.03 -0.04 -25.29 16 15 C -0.16 -4.84 6.19 -11.54 -0.07 -4.91 16 16 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 17 C -0.07 -1.48 10.24 30.59 0.31 -1.17 16 18 C -0.23 -6.60 5.05 -52.19 -0.26 -6.86 16 19 C -0.11 -2.84 10.53 30.59 0.32 -2.52 16 20 C -0.13 -3.85 10.16 30.59 0.31 -3.54 16 21 C -0.12 -3.33 5.67 32.01 0.18 -3.15 16 22 C -0.11 -2.29 6.80 31.79 0.22 -2.08 16 23 C -0.11 -2.42 6.80 31.32 0.21 -2.20 16 24 C -0.12 -3.53 5.68 31.32 0.18 -3.35 16 25 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 26 H 0.38 20.51 7.27 -92.71 -0.67 19.84 16 27 H 0.01 0.64 6.49 -2.39 -0.02 0.62 16 28 H 0.02 0.79 8.02 -2.39 -0.02 0.77 16 29 H 0.41 11.25 8.50 -92.71 -0.79 10.46 16 30 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.13 2.35 8.14 -2.39 -0.02 2.34 16 34 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.07 2.04 8.10 -2.39 -0.02 2.02 16 37 H 0.08 2.27 7.97 -2.39 -0.02 2.25 16 38 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.90 7.84 -2.39 -0.02 1.88 16 43 H 0.06 1.90 6.63 -2.39 -0.02 1.88 16 Total: -1.00 -73.29 348.07 1.81 -71.48 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.46 Total: 41.17 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 3.72 Total: -13.42 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -3.44 Total: -124.14 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.04 Total: -25.29 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.19 kcal Total: -73.29 1.81 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732235267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.235 kcal (2) G-P(sol) polarization free energy of solvation -73.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds