Wall clock time and date at job start Mon Mar 30 2020 23:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47270 * 239.99702 * 3 2 1 5 5 H 1.48497 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47029 * 120.00022 * 3 2 1 7 7 C 1.38811 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00318 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00094 * 186.53630 * 9 7 2 11 11 C 1.52998 * 110.54249 * 58.61966 * 10 9 7 12 12 N 1.46502 * 109.46917 * 57.61629 * 11 10 9 13 13 C 1.34779 * 120.00128 * 175.54330 * 12 11 10 14 14 O 1.21610 * 119.99625 * 359.97438 * 13 12 11 15 15 C 1.47102 * 120.00044 * 180.02562 * 13 12 11 16 16 C 1.32994 * 119.99739 * 179.97438 * 15 13 12 17 17 C 1.51402 * 136.31755 * 359.63758 * 16 15 13 18 18 C 1.53379 * 87.51535 * 206.04888 * 17 16 15 19 19 C 1.51407 * 136.31267 * 179.97438 * 16 15 13 20 20 C 1.54896 * 110.48399 * 296.00869 * 10 9 7 21 21 C 1.54885 * 102.74681 * 279.26366 * 20 10 9 22 22 C 1.54268 * 104.19794 * 322.05817 * 21 20 10 23 23 C 1.53873 * 106.59729 * 23.61146 * 22 21 20 24 24 H 0.96990 * 119.99894 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99516 * 6.53160 * 9 7 2 26 26 H 1.08994 * 109.47636 * 177.61646 * 11 10 9 27 27 H 1.09001 * 109.47425 * 297.62329 * 11 10 9 28 28 H 0.97001 * 120.00062 * 355.53895 * 12 11 10 29 29 H 1.07994 * 119.99862 * 359.97438 * 15 13 12 30 30 H 1.09001 * 113.56254 * 320.62904 * 17 16 15 31 31 H 1.08998 * 113.56593 * 91.36408 * 17 16 15 32 32 H 1.09001 * 113.97237 * 220.28660 * 18 17 16 33 33 H 1.09005 * 113.59635 * 88.79473 * 18 17 16 34 34 H 1.09001 * 113.56238 * 268.63341 * 19 16 15 35 35 H 1.08993 * 113.56060 * 39.36711 * 19 16 15 36 36 H 1.08993 * 110.75434 * 37.58071 * 20 10 9 37 37 H 1.09002 * 110.75359 * 160.95362 * 20 10 9 38 38 H 1.09006 * 110.48728 * 203.38295 * 21 20 10 39 39 H 1.09003 * 110.48825 * 80.74181 * 21 20 10 40 40 H 1.09003 * 110.03115 * 264.32554 * 22 21 20 41 41 H 1.09004 * 110.03015 * 142.89304 * 22 21 20 42 42 H 1.08999 * 110.03144 * 240.71244 * 23 22 21 43 43 H 1.09000 * 110.03138 * 119.28619 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0509 -3.6527 0.1455 11 6 2.8396 -3.6720 1.4564 12 7 1.9234 -3.4645 2.5806 13 6 2.3828 -3.5325 3.8458 14 8 3.5579 -3.7665 4.0542 15 6 1.4628 -3.3248 4.9746 16 6 1.9161 -3.3924 6.2231 17 6 3.2490 -3.6557 6.8912 18 6 2.4637 -4.1534 8.1111 19 6 1.3283 -3.2464 7.6107 20 6 2.9975 -3.8759 -1.0600 21 6 2.0414 -4.4237 -2.1485 22 6 1.0682 -5.3355 -1.3731 23 6 1.0742 -4.8452 0.0855 24 1 -0.4849 0.8400 -0.0004 25 1 0.3603 -2.3908 -0.0954 26 1 3.3377 -4.6351 1.5667 27 1 3.5849 -2.8767 1.4438 28 1 0.9861 -3.2782 2.4144 29 1 0.4192 -3.1174 4.7895 30 1 3.8341 -4.4357 6.4039 31 1 3.8261 -2.7514 7.0838 32 1 2.8864 -3.8431 9.0666 33 1 2.2271 -5.2168 8.0735 34 1 1.3789 -2.2298 8.0006 35 1 0.3383 -3.6906 7.7135 36 1 3.4463 -2.9349 -1.3781 37 1 3.7664 -4.6092 -0.8167 38 1 2.5964 -5.0002 -2.8887 39 1 1.5003 -3.6073 -2.6269 40 1 1.4078 -6.3702 -1.4206 41 1 0.0649 -5.2517 -1.7910 42 1 1.4167 -5.6420 0.7458 43 1 0.0739 -4.5236 0.3754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732389693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:44 Heat of formation + Delta-G solvation = 1.361858 kcal Electronic energy + Delta-G solvation = -22078.502125 eV Core-core repulsion = 18931.350021 eV Total energy + Delta-G solvation = -3147.152103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.53154 -38.58534 -37.67204 -33.95953 -33.20899 -31.01000 -30.26855 -28.21641 -27.82973 -25.75866 -24.66695 -23.48509 -22.64314 -20.45993 -19.72540 -18.81549 -17.90233 -16.96744 -16.54547 -15.83146 -15.47409 -15.30922 -14.58110 -14.35662 -14.15638 -14.10543 -13.52589 -13.32555 -12.82318 -12.55716 -12.46606 -12.01214 -11.76220 -11.65616 -11.34400 -11.06305 -11.00425 -10.81420 -10.72054 -10.62719 -10.50319 -10.43818 -10.28679 -9.98275 -9.81812 -9.63771 -9.27438 -9.04801 -8.88043 -8.27943 -7.00409 -5.80119 -3.09098 1.61999 3.43185 3.47799 3.49506 3.70382 3.84041 4.47984 4.55706 4.60198 4.77669 5.07013 5.16035 5.16874 5.25588 5.43262 5.53465 5.57714 5.61845 5.69240 5.69640 5.77201 5.83032 5.95769 6.01250 6.05401 6.16571 6.19645 6.25364 6.28645 6.35402 6.40078 6.50495 6.58401 6.68729 6.77203 6.82048 6.83987 7.03259 7.17626 7.71190 8.20856 8.38873 8.83538 9.50563 10.04476 10.40329 11.41925 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.005450 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.611516 B = 5136.165295 C = 6546.249591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.232 4.232 8 H 0.069 0.931 9 N -0.708 5.708 10 C 0.188 3.812 11 C 0.122 3.878 12 N -0.696 5.696 13 C 0.543 3.457 14 O -0.561 6.561 15 C -0.184 4.184 16 C -0.078 4.078 17 C -0.102 4.102 18 C -0.143 4.143 19 C -0.107 4.107 20 C -0.131 4.131 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.123 4.123 24 H 0.255 0.745 25 H 0.384 0.616 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.404 0.596 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -10.363 8.516 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.349 5.349 10 C 0.096 3.904 11 C -0.004 4.004 12 N -0.345 5.345 13 C 0.332 3.668 14 O -0.442 6.442 15 C -0.205 4.205 16 C -0.080 4.080 17 C -0.139 4.139 18 C -0.180 4.180 19 C -0.144 4.144 20 C -0.171 4.171 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.161 4.161 24 H 0.065 0.935 25 H 0.219 0.781 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.239 0.761 29 H 0.148 0.852 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.816 -10.372 8.638 13.620 hybrid contribution -0.409 1.235 -0.227 1.321 sum 1.406 -9.137 8.411 12.498 Atomic orbital electron populations 1.69637 1.04999 1.25714 1.57654 1.24676 0.95402 0.97466 1.02847 0.86358 0.78633 0.83874 0.77884 1.21318 1.21796 1.21342 1.19044 0.90960 0.83821 1.42518 0.91351 1.42390 1.06257 0.99443 1.86812 1.20635 0.91410 0.87169 0.91197 1.21779 0.92682 0.99784 0.86192 1.45664 1.13569 1.70327 1.04912 1.18347 0.87739 0.77428 0.83328 1.90708 1.17504 1.50487 1.85520 1.21731 1.00240 1.07304 0.91217 1.23322 0.98619 0.92849 0.93178 1.22152 0.95146 1.02136 0.94490 1.22726 0.97451 0.99625 0.98187 1.22312 0.98957 1.00819 0.92312 1.22883 0.97294 1.00526 0.96431 1.22197 0.97090 0.98523 0.97267 1.22058 0.99479 0.98449 0.95632 1.22375 0.99900 0.97414 0.96444 0.93547 0.78094 0.92857 0.91840 0.76089 0.85162 0.89703 0.88772 0.90721 0.89943 0.88409 0.90655 0.90778 0.92857 0.93085 0.91208 0.92820 0.92449 0.92008 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.70 13.07 55.49 0.73 -25.97 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 7 C -0.23 -6.01 8.59 -15.06 -0.13 -6.13 16 8 H 0.07 1.78 7.13 -52.49 -0.37 1.41 16 9 N -0.71 -15.90 4.70 -45.70 -0.21 -16.12 16 10 C 0.19 3.45 0.52 -130.16 -0.07 3.38 16 11 C 0.12 2.31 4.29 -4.04 -0.02 2.29 16 12 N -0.70 -12.76 5.24 -61.49 -0.32 -13.09 16 13 C 0.54 10.13 7.76 -12.66 -0.10 10.03 16 14 O -0.56 -11.90 15.15 5.27 0.08 -11.82 16 15 C -0.18 -2.83 10.03 -37.81 -0.38 -3.21 16 16 C -0.08 -1.07 6.93 -100.48 -0.70 -1.76 16 17 C -0.10 -1.31 6.99 -27.56 -0.19 -1.51 16 18 C -0.14 -1.37 8.17 -26.19 -0.21 -1.59 16 19 C -0.11 -1.09 7.96 -27.39 -0.22 -1.30 16 20 C -0.13 -2.28 5.90 -24.74 -0.15 -2.42 16 21 C -0.11 -1.79 6.79 -25.07 -0.17 -1.96 16 22 C -0.12 -1.71 6.80 -25.61 -0.17 -1.88 16 23 C -0.12 -1.92 5.70 -25.62 -0.15 -2.07 16 24 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.38 9.27 7.50 -40.82 -0.31 8.97 16 26 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 27 H 0.06 1.37 7.52 -51.93 -0.39 0.98 16 28 H 0.40 7.21 8.05 -40.82 -0.33 6.88 16 29 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.08 1.23 7.49 -51.93 -0.39 0.84 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.44 7.19 -51.93 -0.37 1.07 16 37 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.89 7.80 -51.93 -0.40 0.49 16 43 H 0.06 1.03 7.76 -51.93 -0.40 0.63 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -29.65 347.17 -9.44 -39.09 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -7.17 Total: 13.97 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.74 Total: -8.45 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.19 Total: -55.17 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.65 -9.44 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732389693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.449 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds