Wall clock time and date at job start Mon Mar 30 2020 23:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47270 * 239.99702 * 3 2 1 5 5 H 1.48497 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47029 * 120.00022 * 3 2 1 7 7 C 1.38811 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00318 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00094 * 186.53630 * 9 7 2 11 11 C 1.52998 * 110.54249 * 58.61966 * 10 9 7 12 12 N 1.46502 * 109.46917 * 57.61629 * 11 10 9 13 13 C 1.34779 * 120.00128 * 175.54330 * 12 11 10 14 14 O 1.21610 * 119.99625 * 359.97438 * 13 12 11 15 15 C 1.47102 * 120.00044 * 180.02562 * 13 12 11 16 16 C 1.32994 * 119.99739 * 179.97438 * 15 13 12 17 17 C 1.51402 * 136.31755 * 359.63758 * 16 15 13 18 18 C 1.53379 * 87.51535 * 206.04888 * 17 16 15 19 19 C 1.51407 * 136.31267 * 179.97438 * 16 15 13 20 20 C 1.54896 * 110.48399 * 296.00869 * 10 9 7 21 21 C 1.54885 * 102.74681 * 279.26366 * 20 10 9 22 22 C 1.54268 * 104.19794 * 322.05817 * 21 20 10 23 23 C 1.53873 * 106.59729 * 23.61146 * 22 21 20 24 24 H 0.96990 * 119.99894 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99516 * 6.53160 * 9 7 2 26 26 H 1.08994 * 109.47636 * 177.61646 * 11 10 9 27 27 H 1.09001 * 109.47425 * 297.62329 * 11 10 9 28 28 H 0.97001 * 120.00062 * 355.53895 * 12 11 10 29 29 H 1.07994 * 119.99862 * 359.97438 * 15 13 12 30 30 H 1.09001 * 113.56254 * 320.62904 * 17 16 15 31 31 H 1.08998 * 113.56593 * 91.36408 * 17 16 15 32 32 H 1.09001 * 113.97237 * 220.28660 * 18 17 16 33 33 H 1.09005 * 113.59635 * 88.79473 * 18 17 16 34 34 H 1.09001 * 113.56238 * 268.63341 * 19 16 15 35 35 H 1.08993 * 113.56060 * 39.36711 * 19 16 15 36 36 H 1.08993 * 110.75434 * 37.58071 * 20 10 9 37 37 H 1.09002 * 110.75359 * 160.95362 * 20 10 9 38 38 H 1.09006 * 110.48728 * 203.38295 * 21 20 10 39 39 H 1.09003 * 110.48825 * 80.74181 * 21 20 10 40 40 H 1.09003 * 110.03115 * 264.32554 * 22 21 20 41 41 H 1.09004 * 110.03015 * 142.89304 * 22 21 20 42 42 H 1.08999 * 110.03144 * 240.71244 * 23 22 21 43 43 H 1.09000 * 110.03138 * 119.28619 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0509 -3.6527 0.1455 11 6 2.8396 -3.6720 1.4564 12 7 1.9234 -3.4645 2.5806 13 6 2.3828 -3.5325 3.8458 14 8 3.5579 -3.7665 4.0542 15 6 1.4628 -3.3248 4.9746 16 6 1.9161 -3.3924 6.2231 17 6 3.2490 -3.6557 6.8912 18 6 2.4637 -4.1534 8.1111 19 6 1.3283 -3.2464 7.6107 20 6 2.9975 -3.8759 -1.0600 21 6 2.0414 -4.4237 -2.1485 22 6 1.0682 -5.3355 -1.3731 23 6 1.0742 -4.8452 0.0855 24 1 -0.4849 0.8400 -0.0004 25 1 0.3603 -2.3908 -0.0954 26 1 3.3377 -4.6351 1.5667 27 1 3.5849 -2.8767 1.4438 28 1 0.9861 -3.2782 2.4144 29 1 0.4192 -3.1174 4.7895 30 1 3.8341 -4.4357 6.4039 31 1 3.8261 -2.7514 7.0838 32 1 2.8864 -3.8431 9.0666 33 1 2.2271 -5.2168 8.0735 34 1 1.3789 -2.2298 8.0006 35 1 0.3383 -3.6906 7.7135 36 1 3.4463 -2.9349 -1.3781 37 1 3.7664 -4.6092 -0.8167 38 1 2.5964 -5.0002 -2.8887 39 1 1.5003 -3.6073 -2.6269 40 1 1.4078 -6.3702 -1.4206 41 1 0.0649 -5.2517 -1.7910 42 1 1.4167 -5.6420 0.7458 43 1 0.0739 -4.5236 0.3754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732389693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:43 Heat of formation + Delta-G solvation = -16.431831 kcal Electronic energy + Delta-G solvation = -22079.273717 eV Core-core repulsion = 18931.350021 eV Total energy + Delta-G solvation = -3147.923696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91246 -39.83773 -38.94332 -35.49686 -35.04732 -32.51049 -31.74944 -29.54893 -29.41437 -26.67799 -26.23992 -25.19023 -23.75933 -21.78355 -21.05665 -20.28435 -19.19306 -18.84837 -17.89037 -17.28068 -16.68594 -16.41003 -16.16436 -15.81347 -15.70498 -15.34360 -15.16185 -14.97157 -14.34817 -13.99688 -13.48151 -13.32985 -13.12129 -12.93072 -12.87659 -12.61541 -12.39494 -12.34621 -12.28461 -11.94913 -11.89023 -11.74198 -11.59314 -11.45502 -11.40292 -11.17893 -10.90418 -10.61479 -10.24975 -9.76446 -8.94755 -7.90624 -5.16177 0.42358 1.44632 1.45896 1.50831 2.32049 2.46750 2.57220 3.39696 3.47886 3.60980 3.77212 3.83558 3.84216 3.95241 4.12941 4.24617 4.28729 4.45929 4.60869 4.63546 4.66790 4.74624 4.78153 4.85555 4.87492 4.95131 4.99243 5.05159 5.05883 5.13631 5.21292 5.22460 5.28049 5.36962 5.40309 5.48668 5.59687 5.62742 5.68181 5.73273 6.33080 6.74434 7.36906 7.40618 8.13822 8.39203 9.31622 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.005450 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.611516 B = 5136.165295 C = 6546.249591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.063 4.063 3 Si 0.950 3.050 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.216 4.216 8 H 0.062 0.938 9 N -0.710 5.710 10 C 0.183 3.817 11 C 0.129 3.871 12 N -0.696 5.696 13 C 0.536 3.464 14 O -0.595 6.595 15 C -0.213 4.213 16 C -0.076 4.076 17 C -0.117 4.117 18 C -0.126 4.126 19 C -0.097 4.097 20 C -0.130 4.130 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.116 4.116 24 H 0.248 0.752 25 H 0.376 0.624 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.406 0.594 29 H 0.148 0.852 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -11.846 9.738 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.255 4.255 3 Si 0.782 3.218 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.080 0.920 9 N -0.350 5.350 10 C 0.092 3.908 11 C 0.003 3.997 12 N -0.344 5.344 13 C 0.327 3.673 14 O -0.479 6.479 15 C -0.233 4.233 16 C -0.078 4.078 17 C -0.154 4.154 18 C -0.163 4.163 19 C -0.133 4.133 20 C -0.171 4.171 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.154 4.154 24 H 0.057 0.943 25 H 0.210 0.790 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.242 0.758 29 H 0.165 0.835 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.532 -11.884 9.852 15.513 hybrid contribution -0.196 1.616 -0.555 1.720 sum 1.336 -10.268 9.297 13.916 Atomic orbital electron populations 1.69747 1.05858 1.25582 1.59897 1.25213 0.96077 0.99816 1.04424 0.85561 0.77470 0.81232 0.77578 1.20902 1.22145 1.21833 1.19199 0.90755 0.85082 1.39802 0.92045 1.42428 1.05863 1.00074 1.86605 1.20871 0.92205 0.86579 0.91131 1.21655 0.92262 0.99024 0.86791 1.45678 1.13477 1.70319 1.04924 1.18959 0.87867 0.76462 0.84038 1.90679 1.19039 1.52221 1.85981 1.21692 1.00550 1.10375 0.90722 1.23940 0.99955 0.89621 0.94260 1.22316 0.94970 1.01795 0.96329 1.22704 0.95999 0.99954 0.97660 1.22405 0.99972 1.02005 0.88963 1.22857 0.97873 0.99964 0.96361 1.22158 0.96993 0.98276 0.97295 1.22048 0.99452 0.99457 0.94048 1.22324 0.98780 0.96327 0.97997 0.94275 0.79033 0.91665 0.95292 0.75816 0.83474 0.92043 0.88578 0.88288 0.89288 0.86771 0.88751 0.93588 0.90624 0.90565 0.93839 0.90041 0.91997 0.90328 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.99 13.07 21.65 0.28 -55.71 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.95 46.44 29.55 68.60 2.03 48.46 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 7 C -0.22 -11.40 8.59 84.03 0.72 -10.67 16 8 H 0.06 3.29 7.13 -2.91 -0.02 3.27 16 9 N -0.71 -32.33 4.70 -298.49 -1.40 -33.73 16 10 C 0.18 6.66 0.52 4.68 0.00 6.66 16 11 C 0.13 4.93 4.29 86.38 0.37 5.30 16 12 N -0.70 -25.83 5.24 -466.72 -2.45 -28.27 16 13 C 0.54 20.32 7.76 86.57 0.67 20.99 16 14 O -0.60 -25.93 15.15 -4.06 -0.06 -25.99 16 15 C -0.21 -6.48 10.03 23.43 0.23 -6.24 16 16 C -0.08 -1.99 6.93 -17.17 -0.12 -2.11 16 17 C -0.12 -2.90 6.99 30.06 0.21 -2.69 16 18 C -0.13 -2.05 8.17 30.95 0.25 -1.80 16 19 C -0.10 -1.65 7.96 30.16 0.24 -1.41 16 20 C -0.13 -4.44 5.90 31.89 0.19 -4.25 16 21 C -0.11 -3.28 6.79 31.67 0.22 -3.06 16 22 C -0.11 -2.93 6.80 31.32 0.21 -2.72 16 23 C -0.12 -3.42 5.70 31.32 0.18 -3.24 16 24 H 0.25 14.33 8.31 -92.72 -0.77 13.56 16 25 H 0.38 18.41 7.50 -92.71 -0.69 17.72 16 26 H 0.07 2.33 8.08 -2.39 -0.02 2.31 16 27 H 0.03 1.29 7.52 -2.39 -0.02 1.27 16 28 H 0.41 14.64 8.05 -92.71 -0.75 13.90 16 29 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.06 1.80 7.49 -2.39 -0.02 1.79 16 31 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.81 7.19 -2.39 -0.02 1.79 16 37 H 0.08 2.23 8.06 -2.39 -0.02 2.21 16 38 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.08 2.07 7.80 -2.39 -0.02 2.05 16 43 H 0.06 1.88 7.76 -2.39 -0.02 1.86 16 Total: -1.00 -65.47 347.17 1.81 -63.66 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: -0.44 Total: 39.84 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 3.85 Total: -8.25 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -3.57 Total: -117.72 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.06 Total: -25.99 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -65.47 1.81 -63.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732389693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.226 kcal (2) G-P(sol) polarization free energy of solvation -65.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds