Wall clock time and date at job start Tue Mar 31 2020 00:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00403 * 2 1 4 4 H 1.48498 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47045 * 300.00270 * 3 2 1 6 6 H 1.48500 * 109.47094 * 59.99678 * 3 2 1 7 7 C 1.38814 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00297 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99536 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99701 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47064 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.43380 * 303.91095 * 11 10 9 13 13 C 1.54897 * 110.48649 * 66.45218 * 11 10 9 14 14 C 1.54882 * 102.74839 * 156.75256 * 13 11 10 15 15 C 1.54268 * 104.19992 * 322.05790 * 14 13 11 16 16 C 1.53876 * 106.59607 * 23.60931 * 15 14 13 17 17 H 1.09002 * 110.03703 * 119.28069 * 16 15 14 18 18 N 1.46504 * 110.07458 * 240.69627 * 16 15 14 19 19 C 1.34782 * 119.99582 * 272.18972 * 18 16 15 20 20 O 1.21283 * 119.99960 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99567 * 179.97438 * 19 18 16 22 22 C 1.54629 * 111.03873 * 292.02311 * 21 19 18 23 23 C 1.51103 * 104.72549 * 217.33818 * 22 21 19 24 24 C 1.30527 * 111.10682 * 16.43684 * 23 22 21 25 25 C 1.51105 * 111.10175 * 359.97438 * 24 23 22 26 26 H 0.96998 * 119.99828 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00641 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47466 * 59.99864 * 10 9 7 29 29 H 1.09004 * 109.47012 * 299.99641 * 10 9 7 30 30 H 1.08994 * 110.75328 * 275.07089 * 13 11 10 31 31 H 1.09004 * 110.75215 * 38.43797 * 13 11 10 32 32 H 1.09003 * 110.48391 * 80.73538 * 14 13 11 33 33 H 1.09004 * 110.48801 * 203.38079 * 14 13 11 34 34 H 1.08994 * 110.03288 * 264.32894 * 15 14 13 35 35 H 1.09000 * 110.07311 * 142.91218 * 15 14 13 36 36 H 0.96994 * 120.00286 * 92.19032 * 18 16 15 37 37 H 1.08993 * 110.91156 * 56.03652 * 21 19 18 38 38 H 1.08999 * 110.38752 * 336.14771 * 22 21 19 39 39 H 1.08994 * 110.38906 * 98.52215 * 22 21 19 40 40 H 1.08004 * 124.44481 * 196.45338 * 23 22 21 41 41 H 1.07999 * 124.44923 * 179.97438 * 24 23 22 42 42 H 1.08994 * 110.38543 * 224.75622 * 25 24 23 43 43 H 1.08999 * 110.48229 * 102.42444 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3836 -4.7385 0.8491 13 6 0.2702 -4.8554 -1.3287 14 6 -0.1867 -6.3327 -1.4146 15 6 1.0132 -7.1325 -0.8664 16 6 1.8082 -6.1705 0.0337 17 1 1.8409 -6.5542 1.0535 18 7 3.1688 -6.0060 -0.4841 19 6 4.1411 -6.8597 -0.1067 20 8 3.8898 -7.7637 0.6618 21 6 5.5405 -6.6910 -0.6398 22 6 5.5977 -6.9939 -2.1550 23 6 6.9214 -7.6939 -2.3572 24 6 7.4051 -8.1214 -1.2227 25 6 6.4848 -7.7772 -0.0747 26 1 -0.4850 0.8400 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.6846 -3.7146 0.8905 29 1 2.6846 -3.7146 -0.8895 30 1 -0.5896 -4.1870 -1.2835 31 1 0.9149 -4.6009 -2.1700 32 1 -1.0688 -6.4958 -0.7952 33 1 -0.3893 -6.6099 -2.4491 34 1 1.6393 -7.4772 -1.6892 35 1 0.6607 -7.9836 -0.2837 36 1 3.3699 -5.2829 -1.0984 37 1 5.9208 -5.6923 -0.4252 38 1 4.7745 -7.6478 -2.4428 39 1 5.5663 -6.0678 -2.7289 40 1 7.4041 -7.8233 -3.3146 41 1 8.3402 -8.6515 -1.1182 42 1 7.0568 -7.3839 0.7656 43 1 5.9138 -8.6534 0.2324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732615451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:37 Heat of formation + Delta-G solvation = -21.268926 kcal Electronic energy + Delta-G solvation = -21995.350767 eV Core-core repulsion = 18847.217320 eV Total energy + Delta-G solvation = -3148.133448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -40.42415 -38.68883 -37.18647 -34.41028 -33.44180 -31.43978 -29.93357 -28.59585 -28.32389 -27.30924 -24.54795 -22.68279 -22.35645 -20.33943 -19.96875 -19.23395 -18.89187 -17.56362 -17.04824 -16.39119 -15.77999 -15.03794 -14.92687 -14.71830 -14.33049 -13.75240 -13.60987 -13.16476 -12.96360 -12.86324 -12.63333 -12.34024 -12.27392 -11.83984 -11.54593 -11.45622 -11.29092 -11.18663 -10.89962 -10.86425 -10.77914 -10.48471 -10.35477 -10.31968 -9.97817 -9.72206 -9.68402 -9.07859 -8.90920 -8.89616 -6.95001 -5.79470 -3.08136 2.06088 2.70052 3.27766 3.41213 3.46952 3.49099 4.32350 4.44412 4.53166 4.68921 4.80097 4.87515 5.03586 5.07606 5.12595 5.41356 5.46858 5.49336 5.52883 5.59350 5.64267 5.67702 5.72297 5.79579 5.81415 5.86044 5.93565 6.02358 6.05562 6.12831 6.21702 6.29752 6.31407 6.49766 6.54967 6.67539 6.70067 6.74202 6.81632 7.63771 7.67518 8.32310 8.39389 9.50912 10.08468 10.43239 11.43415 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.004432 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.350113 B = 6316.206917 C = 7537.291539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.165 3.835 11 C -0.107 4.107 12 H 0.086 0.914 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.147 3.853 17 H 0.088 0.912 18 N -0.715 5.715 19 C 0.523 3.477 20 O -0.546 6.546 21 C -0.119 4.119 22 C -0.089 4.089 23 C -0.170 4.170 24 C -0.162 4.162 25 C -0.088 4.088 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.405 0.595 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.074 0.926 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 -16.383 -4.873 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.037 3.963 11 C -0.127 4.127 12 H 0.105 0.895 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.042 3.958 17 H 0.106 0.894 18 N -0.368 5.368 19 C 0.309 3.691 20 O -0.424 6.424 21 C -0.140 4.140 22 C -0.126 4.126 23 C -0.188 4.188 24 C -0.180 4.180 25 C -0.125 4.125 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.242 0.758 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.092 0.908 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.521 -16.896 -4.311 19.408 hybrid contribution 0.291 1.366 -0.320 1.433 sum 8.812 -15.530 -4.630 18.446 Atomic orbital electron populations 1.69665 1.05110 1.25557 1.57742 1.24732 0.95506 0.97674 1.02963 0.86135 0.78782 0.84165 0.77210 1.20578 1.21856 1.21857 1.19258 0.91019 0.84174 1.42690 0.91210 1.42352 1.05905 0.99829 1.89323 1.20564 0.93030 0.85361 0.97330 1.22473 0.97786 0.93292 0.99110 0.89539 1.22493 1.00182 0.95308 0.96972 1.22390 0.97547 0.95855 1.00526 1.22560 0.97057 0.98073 0.99200 1.21609 0.80613 0.95511 0.98071 0.89429 1.46299 1.09331 1.32365 1.48781 1.20338 0.86508 0.81564 0.80685 1.90660 1.83145 1.32900 1.35685 1.22191 0.93111 1.01958 0.96762 1.21304 0.96718 1.00825 0.93780 1.23209 0.96655 1.00459 0.98494 1.23321 0.99231 1.00322 0.95118 1.21280 0.95409 0.98746 0.97050 0.93546 0.78178 0.96293 0.96770 0.90814 0.91442 0.91675 0.91948 0.91660 0.91573 0.75759 0.87537 0.90329 0.90203 0.85655 0.85693 0.90779 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.91 5.44 -59.90 -0.33 -18.23 16 10 C 0.17 3.15 4.87 -4.04 -0.02 3.13 16 11 C -0.11 -1.68 2.88 -88.95 -0.26 -1.93 16 12 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.11 -1.63 6.01 -24.74 -0.15 -1.78 16 14 C -0.13 -1.51 6.83 -25.07 -0.17 -1.68 16 15 C -0.13 -1.61 6.59 -25.61 -0.17 -1.78 16 16 C 0.15 2.05 3.12 -66.81 -0.21 1.84 16 17 H 0.09 1.33 7.56 -51.93 -0.39 0.94 16 18 N -0.72 -9.35 4.35 -52.71 -0.23 -9.58 16 19 C 0.52 7.13 7.06 -10.98 -0.08 7.05 16 20 O -0.55 -9.19 15.16 5.56 0.08 -9.10 16 21 C -0.12 -1.30 3.54 -90.06 -0.32 -1.62 16 22 C -0.09 -0.84 6.37 -26.83 -0.17 -1.01 16 23 C -0.17 -1.50 10.77 -35.70 -0.38 -1.89 16 24 C -0.16 -1.47 10.78 -35.70 -0.38 -1.86 16 25 C -0.09 -0.93 6.18 -26.83 -0.17 -1.10 16 26 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.38 9.93 7.52 -40.82 -0.31 9.63 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.01 0.27 6.28 -51.93 -0.33 -0.06 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.80 7.92 -51.93 -0.41 0.39 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 4.97 6.48 -40.82 -0.26 4.71 16 37 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 0.77 7.88 -51.93 -0.41 0.36 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.16 6.95 -51.93 -0.36 0.80 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -31.21 343.54 -9.40 -40.61 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.09 Total: 10.91 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.72 Total: -9.82 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.17 Total: -54.89 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.21 -9.40 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.341 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds