Wall clock time and date at job start Tue Mar 31 2020 00:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00403 * 2 1 4 4 H 1.48498 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47045 * 300.00270 * 3 2 1 6 6 H 1.48500 * 109.47094 * 59.99678 * 3 2 1 7 7 C 1.38814 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00297 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99536 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99701 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47064 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.43380 * 303.91095 * 11 10 9 13 13 C 1.54897 * 110.48649 * 66.45218 * 11 10 9 14 14 C 1.54882 * 102.74839 * 156.75256 * 13 11 10 15 15 C 1.54268 * 104.19992 * 322.05790 * 14 13 11 16 16 C 1.53876 * 106.59607 * 23.60931 * 15 14 13 17 17 H 1.09002 * 110.03703 * 119.28069 * 16 15 14 18 18 N 1.46504 * 110.07458 * 240.69627 * 16 15 14 19 19 C 1.34782 * 119.99582 * 272.18972 * 18 16 15 20 20 O 1.21283 * 119.99960 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99567 * 179.97438 * 19 18 16 22 22 C 1.54629 * 111.03873 * 292.02311 * 21 19 18 23 23 C 1.51103 * 104.72549 * 217.33818 * 22 21 19 24 24 C 1.30527 * 111.10682 * 16.43684 * 23 22 21 25 25 C 1.51105 * 111.10175 * 359.97438 * 24 23 22 26 26 H 0.96998 * 119.99828 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00641 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47466 * 59.99864 * 10 9 7 29 29 H 1.09004 * 109.47012 * 299.99641 * 10 9 7 30 30 H 1.08994 * 110.75328 * 275.07089 * 13 11 10 31 31 H 1.09004 * 110.75215 * 38.43797 * 13 11 10 32 32 H 1.09003 * 110.48391 * 80.73538 * 14 13 11 33 33 H 1.09004 * 110.48801 * 203.38079 * 14 13 11 34 34 H 1.08994 * 110.03288 * 264.32894 * 15 14 13 35 35 H 1.09000 * 110.07311 * 142.91218 * 15 14 13 36 36 H 0.96994 * 120.00286 * 92.19032 * 18 16 15 37 37 H 1.08993 * 110.91156 * 56.03652 * 21 19 18 38 38 H 1.08999 * 110.38752 * 336.14771 * 22 21 19 39 39 H 1.08994 * 110.38906 * 98.52215 * 22 21 19 40 40 H 1.08004 * 124.44481 * 196.45338 * 23 22 21 41 41 H 1.07999 * 124.44923 * 179.97438 * 24 23 22 42 42 H 1.08994 * 110.38543 * 224.75622 * 25 24 23 43 43 H 1.08999 * 110.48229 * 102.42444 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3836 -4.7385 0.8491 13 6 0.2702 -4.8554 -1.3287 14 6 -0.1867 -6.3327 -1.4146 15 6 1.0132 -7.1325 -0.8664 16 6 1.8082 -6.1705 0.0337 17 1 1.8409 -6.5542 1.0535 18 7 3.1688 -6.0060 -0.4841 19 6 4.1411 -6.8597 -0.1067 20 8 3.8898 -7.7637 0.6618 21 6 5.5405 -6.6910 -0.6398 22 6 5.5977 -6.9939 -2.1550 23 6 6.9214 -7.6939 -2.3572 24 6 7.4051 -8.1214 -1.2227 25 6 6.4848 -7.7772 -0.0747 26 1 -0.4850 0.8400 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.6846 -3.7146 0.8905 29 1 2.6846 -3.7146 -0.8895 30 1 -0.5896 -4.1870 -1.2835 31 1 0.9149 -4.6009 -2.1700 32 1 -1.0688 -6.4958 -0.7952 33 1 -0.3893 -6.6099 -2.4491 34 1 1.6393 -7.4772 -1.6892 35 1 0.6607 -7.9836 -0.2837 36 1 3.3699 -5.2829 -1.0984 37 1 5.9208 -5.6923 -0.4252 38 1 4.7745 -7.6478 -2.4428 39 1 5.5663 -6.0678 -2.7289 40 1 7.4041 -7.8233 -3.3146 41 1 8.3402 -8.6515 -1.1182 42 1 7.0568 -7.3839 0.7656 43 1 5.9138 -8.6534 0.2324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732615451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:37 Heat of formation + Delta-G solvation = -39.796193 kcal Electronic energy + Delta-G solvation = -21996.154170 eV Core-core repulsion = 18847.217320 eV Total energy + Delta-G solvation = -3148.936850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49746 -39.74893 -38.21179 -36.24722 -34.57746 -33.31535 -30.81614 -30.16587 -29.11297 -28.36800 -26.31858 -24.10622 -23.63016 -21.43016 -20.99957 -20.50764 -19.64032 -19.19476 -18.39832 -17.28137 -16.91674 -16.56277 -16.24743 -15.93109 -15.64352 -15.17656 -15.01331 -14.84943 -14.44858 -13.81838 -13.66923 -13.45578 -13.13403 -13.02808 -12.86725 -12.74130 -12.55221 -12.36916 -12.13562 -12.08621 -12.04778 -11.97172 -11.80638 -11.64528 -11.54670 -11.46404 -10.91812 -10.81700 -10.04638 -9.78573 -8.98754 -7.94411 -5.22862 1.37916 1.48333 1.49033 1.58736 1.62284 2.21298 2.56381 3.38503 3.43839 3.52170 3.65320 3.69730 3.86737 3.94117 4.18872 4.25981 4.37926 4.38993 4.50376 4.56086 4.57004 4.62210 4.68163 4.78240 4.78947 4.83553 4.85797 4.94619 5.02314 5.07251 5.12353 5.18936 5.24076 5.26882 5.37806 5.47491 5.52117 5.58939 5.63709 6.00904 6.27817 6.55833 7.24000 7.34868 8.10291 8.33754 9.29324 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.004432 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.350113 B = 6316.206917 C = 7537.291539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.742 5.742 10 C 0.167 3.833 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.122 4.122 16 C 0.153 3.847 17 H 0.073 0.927 18 N -0.710 5.710 19 C 0.522 3.478 20 O -0.581 6.581 21 C -0.119 4.119 22 C -0.088 4.088 23 C -0.168 4.168 24 C -0.169 4.169 25 C -0.090 4.090 26 H 0.251 0.749 27 H 0.375 0.625 28 H 0.009 0.991 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 -16.940 -6.175 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.384 5.384 10 C 0.040 3.960 11 C -0.119 4.119 12 H 0.094 0.906 13 C -0.147 4.147 14 C -0.152 4.152 15 C -0.161 4.161 16 C 0.047 3.953 17 H 0.091 0.909 18 N -0.363 5.363 19 C 0.310 3.690 20 O -0.461 6.461 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.186 4.186 24 C -0.187 4.187 25 C -0.128 4.128 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.027 0.973 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.248 0.752 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.095 0.905 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.984 -17.475 -5.626 20.897 hybrid contribution -0.137 1.490 0.122 1.502 sum 9.847 -15.984 -5.504 19.564 Atomic orbital electron populations 1.69815 1.06592 1.25956 1.59552 1.25523 0.96334 1.00971 1.03724 0.85116 0.78316 0.79985 0.76597 1.18991 1.21955 1.22337 1.19659 0.91511 0.85317 1.41049 0.90601 1.42546 1.05686 1.00987 1.89231 1.20682 0.93515 0.84502 0.97280 1.22343 0.97173 0.92837 0.99567 0.90555 1.22426 0.99286 0.96924 0.96023 1.22328 0.97501 0.93516 1.01825 1.22492 0.96911 0.97707 0.98989 1.21488 0.81188 0.94613 0.98011 0.90874 1.46252 1.09021 1.32415 1.48579 1.20812 0.87444 0.80808 0.79949 1.90646 1.83828 1.34369 1.37285 1.22233 0.91175 1.02573 0.97996 1.21332 0.97126 1.01575 0.92486 1.23412 0.96115 0.99727 0.99315 1.23419 0.99810 1.00998 0.94440 1.21273 0.95568 0.97874 0.98051 0.94043 0.79310 0.97286 0.95113 0.92597 0.91560 0.90982 0.90146 0.91061 0.91013 0.75163 0.86546 0.90786 0.88757 0.83548 0.83906 0.90518 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.50 13.06 21.65 0.28 -58.22 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 7 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -36.56 5.44 -343.43 -1.87 -38.43 16 10 C 0.17 6.31 4.87 86.38 0.42 6.73 16 11 C -0.10 -3.09 2.88 -9.71 -0.03 -3.12 16 12 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.11 -3.09 6.01 31.89 0.19 -2.90 16 14 C -0.11 -2.52 6.83 31.67 0.22 -2.31 16 15 C -0.12 -2.81 6.59 31.32 0.21 -2.60 16 16 C 0.15 4.14 3.12 45.72 0.14 4.28 16 17 H 0.07 2.23 7.56 -2.39 -0.02 2.21 16 18 N -0.71 -17.85 4.35 -439.08 -1.91 -19.76 16 19 C 0.52 13.89 7.06 87.66 0.62 14.51 16 20 O -0.58 -19.59 15.16 -3.04 -0.05 -19.63 16 21 C -0.12 -2.43 3.54 -10.43 -0.04 -2.47 16 22 C -0.09 -1.46 6.37 30.53 0.19 -1.27 16 23 C -0.17 -2.53 10.77 26.26 0.28 -2.24 16 24 C -0.17 -2.73 10.78 26.26 0.28 -2.45 16 25 C -0.09 -1.85 6.18 30.53 0.19 -1.66 16 26 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.37 19.73 7.52 -92.71 -0.70 19.03 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.03 1.09 6.28 -2.38 -0.01 1.07 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.89 8.03 -2.38 -0.02 1.87 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.58 7.92 -2.39 -0.02 1.56 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.41 9.45 6.48 -92.71 -0.60 8.85 16 37 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.07 1.32 7.88 -2.39 -0.02 1.30 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.82 6.95 -2.39 -0.02 1.80 16 Total: -1.00 -66.53 343.54 2.17 -64.35 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.30 Total: 35.84 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 3.99 Total: -11.62 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -3.50 Total: -116.40 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -66.53 2.17 -64.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.556 kcal (2) G-P(sol) polarization free energy of solvation -66.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds