Wall clock time and date at job start Tue Mar 31 2020 00:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99898 * 2 1 4 4 H 1.48504 * 109.46897 * 239.99806 * 3 2 1 5 5 H 1.48497 * 109.47389 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47289 * 120.00224 * 3 2 1 7 7 C 1.38813 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00240 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99817 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46970 * 180.02562 * 10 9 7 12 12 H 1.09007 * 110.01383 * 306.39017 * 11 10 9 13 13 C 1.54264 * 110.03487 * 67.83361 * 11 10 9 14 14 C 1.54890 * 104.19444 * 142.89194 * 13 11 10 15 15 C 1.55009 * 102.75776 * 322.04779 * 14 13 11 16 16 C 1.53872 * 110.03080 * 185.00178 * 11 10 9 17 17 H 1.09001 * 110.03374 * 0.05223 * 16 11 10 18 18 N 1.46506 * 110.03299 * 121.42712 * 16 11 10 19 19 C 1.34773 * 119.99969 * 204.03128 * 18 16 11 20 20 O 1.21281 * 120.00220 * 0.02562 * 19 18 16 21 21 C 1.50706 * 120.00080 * 180.02562 * 19 18 16 22 22 C 1.54634 * 111.03517 * 295.33925 * 21 19 18 23 23 C 1.51168 * 104.69177 * 217.36231 * 22 21 19 24 24 C 1.30526 * 111.12105 * 16.37759 * 23 22 21 25 25 C 1.51098 * 111.10416 * 0.03568 * 24 23 22 26 26 H 0.97001 * 120.00070 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00351 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.46991 * 60.00232 * 10 9 7 29 29 H 1.08999 * 109.47216 * 300.00203 * 10 9 7 30 30 H 1.08998 * 110.48448 * 261.57410 * 13 11 10 31 31 H 1.08997 * 110.48527 * 24.21808 * 13 11 10 32 32 H 1.09001 * 110.75359 * 80.37709 * 14 13 11 33 33 H 1.09002 * 110.75605 * 203.55383 * 14 13 11 34 34 H 1.09001 * 110.50765 * 279.29649 * 15 14 13 35 35 H 1.08999 * 110.52814 * 156.61208 * 15 14 13 36 36 H 0.97005 * 119.99811 * 24.31181 * 18 16 11 37 37 H 1.08995 * 110.90919 * 59.29809 * 21 19 18 38 38 H 1.09000 * 110.38721 * 336.14212 * 22 21 19 39 39 H 1.08996 * 110.39269 * 98.51737 * 22 21 19 40 40 H 1.08009 * 124.43185 * 196.40713 * 23 22 21 41 41 H 1.08004 * 124.44759 * 180.02562 * 24 23 22 42 42 H 1.08998 * 110.39053 * 224.75300 * 25 24 23 43 43 H 1.09004 * 110.48511 * 102.42219 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.3592 -4.7086 0.8242 13 6 0.3053 -4.8658 -1.3426 14 6 0.1428 -6.3780 -1.6353 15 6 1.4893 -6.9684 -1.1443 16 6 1.8159 -6.1562 0.1259 17 1 2.8891 -5.9763 0.1885 18 7 1.3586 -6.8792 1.3153 19 6 2.1604 -7.7918 1.8989 20 8 3.2608 -8.0142 1.4398 21 6 1.6898 -8.5359 3.1220 22 6 1.4865 -7.5721 4.3141 23 6 1.9488 -8.3539 5.5224 24 6 2.6635 -9.3873 5.1688 25 6 2.7981 -9.4671 3.6659 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 -0.0002 28 1 2.6847 -3.7146 0.8905 29 1 2.6848 -3.7146 -0.8894 30 1 -0.6700 -4.3888 -1.2462 31 1 0.8897 -4.3860 -2.1276 32 1 -0.6908 -6.7937 -1.0691 33 1 0.0077 -6.5526 -2.7028 34 1 2.2650 -6.8277 -1.8970 35 1 1.3779 -8.0255 -0.9030 36 1 0.4771 -6.7040 1.6803 37 1 0.7781 -9.0945 2.9107 38 1 2.0944 -6.6764 4.1862 39 1 0.4339 -7.3067 4.4126 40 1 1.7176 -8.0919 6.5444 41 1 3.1013 -10.0926 5.8597 42 1 2.6366 -10.4894 3.3239 43 1 3.7798 -9.1129 3.3515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732615452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:42 Heat of formation + Delta-G solvation = -25.798822 kcal Electronic energy + Delta-G solvation = -21721.118716 eV Core-core repulsion = 18572.788837 eV Total energy + Delta-G solvation = -3148.329879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.42993 -38.66397 -37.25179 -34.49787 -33.41951 -31.36640 -29.98033 -28.56231 -28.36849 -27.36531 -24.52276 -22.84507 -21.91559 -20.63854 -19.95678 -19.29812 -18.98026 -17.45734 -16.83641 -16.44859 -16.23429 -15.18337 -14.93638 -14.50562 -14.17148 -13.92853 -13.52165 -13.12384 -13.00782 -12.79482 -12.60406 -12.37229 -12.03189 -11.96300 -11.59881 -11.49653 -11.36407 -11.18923 -10.92450 -10.81529 -10.76561 -10.57754 -10.41358 -10.28442 -10.02103 -9.75342 -9.65662 -9.11402 -8.94921 -8.85103 -6.90933 -5.75766 -3.03986 2.03640 2.63017 3.18995 3.45216 3.49389 3.50556 4.25859 4.39036 4.56577 4.68582 4.77821 4.84215 4.97823 5.05487 5.09701 5.35809 5.44581 5.48146 5.56225 5.56966 5.63619 5.65927 5.70166 5.76315 5.83046 5.86408 5.91569 5.98279 6.06368 6.19722 6.23131 6.28570 6.29879 6.50761 6.61524 6.62933 6.64580 6.79295 6.92443 7.54276 7.71098 8.24956 8.43407 9.54690 10.12320 10.47608 11.47131 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.003835 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.897720 B = 7299.136048 C = 8258.827160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.077 0.923 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.129 4.129 16 C 0.145 3.855 17 H 0.092 0.908 18 N -0.717 5.717 19 C 0.522 3.478 20 O -0.541 6.541 21 C -0.117 4.117 22 C -0.092 4.092 23 C -0.168 4.168 24 C -0.165 4.165 25 C -0.087 4.087 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.017 0.983 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.399 0.601 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.072 0.928 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -20.050 5.793 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.095 0.905 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.168 4.168 16 C 0.040 3.960 17 H 0.110 0.890 18 N -0.367 5.367 19 C 0.308 3.692 20 O -0.418 6.418 21 C -0.139 4.139 22 C -0.129 4.129 23 C -0.186 4.186 24 C -0.183 4.183 25 C -0.124 4.124 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.234 0.766 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.091 0.909 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.315 -20.061 5.444 20.789 hybrid contribution -0.329 1.076 0.288 1.162 sum -0.015 -18.985 5.731 19.831 Atomic orbital electron populations 1.69644 1.05090 1.25717 1.57892 1.24719 0.95519 0.97636 1.03075 0.86269 0.78526 0.83537 0.77878 1.21272 1.21693 1.21286 1.19199 0.91031 0.84211 1.42592 0.91289 1.42316 1.05807 0.99846 1.89496 1.20734 0.92882 0.85163 0.97874 1.22215 0.97920 0.93407 0.98609 0.90458 1.22371 1.00714 0.95019 0.96876 1.22560 0.96847 0.96340 1.00551 1.22750 0.97893 0.99060 0.97096 1.21675 1.00063 0.90587 0.83682 0.89038 1.46201 1.19467 1.40855 1.30202 1.20353 0.84899 0.79605 0.84391 1.90686 1.20921 1.65309 1.64880 1.22188 1.00792 0.97569 0.93304 1.21356 1.02231 0.98079 0.91233 1.23238 0.99959 0.96675 0.98700 1.23307 0.99469 0.98790 0.96700 1.21271 0.99607 0.99219 0.92300 0.93511 0.78269 0.96474 0.96065 0.91281 0.90801 0.92015 0.91791 0.90834 0.91798 0.76628 0.87793 0.89906 0.90257 0.85586 0.85665 0.90889 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.40 5.45 -59.90 -0.33 -18.73 16 10 C 0.16 3.26 5.32 -4.04 -0.02 3.24 16 11 C -0.10 -1.59 2.73 -89.50 -0.24 -1.84 16 12 H 0.08 1.20 7.61 -51.93 -0.40 0.80 16 13 C -0.11 -1.66 6.08 -25.07 -0.15 -1.81 16 14 C -0.13 -1.49 6.91 -24.67 -0.17 -1.66 16 15 C -0.13 -1.62 6.54 -25.01 -0.16 -1.79 16 16 C 0.14 2.01 2.88 -66.81 -0.19 1.82 16 17 H 0.09 1.48 7.12 -51.93 -0.37 1.11 16 18 N -0.72 -8.51 5.03 -52.72 -0.27 -8.78 16 19 C 0.52 6.68 7.05 -10.98 -0.08 6.60 16 20 O -0.54 -8.97 15.21 5.56 0.08 -8.89 16 21 C -0.12 -1.14 3.54 -90.05 -0.32 -1.46 16 22 C -0.09 -0.84 6.37 -26.80 -0.17 -1.01 16 23 C -0.17 -1.46 10.78 -35.66 -0.38 -1.84 16 24 C -0.16 -1.44 10.77 -35.70 -0.38 -1.82 16 25 C -0.09 -0.86 6.16 -26.83 -0.17 -1.03 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.38 10.03 7.55 -40.82 -0.31 9.73 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.21 7.76 -51.93 -0.40 0.81 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.79 8.04 -51.93 -0.42 0.37 16 36 H 0.40 3.87 8.31 -40.82 -0.34 3.53 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 41 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -32.10 346.92 -9.47 -41.56 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.20 Total: 9.49 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -2.69 Total: -9.98 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.13 Total: -54.95 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.10 -9.47 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.766 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds