Wall clock time and date at job start Tue Mar 31 2020 00:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99898 * 2 1 4 4 H 1.48504 * 109.46897 * 239.99806 * 3 2 1 5 5 H 1.48497 * 109.47389 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47289 * 120.00224 * 3 2 1 7 7 C 1.38813 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00240 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99817 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46970 * 180.02562 * 10 9 7 12 12 H 1.09007 * 110.01383 * 306.39017 * 11 10 9 13 13 C 1.54264 * 110.03487 * 67.83361 * 11 10 9 14 14 C 1.54890 * 104.19444 * 142.89194 * 13 11 10 15 15 C 1.55009 * 102.75776 * 322.04779 * 14 13 11 16 16 C 1.53872 * 110.03080 * 185.00178 * 11 10 9 17 17 H 1.09001 * 110.03374 * 0.05223 * 16 11 10 18 18 N 1.46506 * 110.03299 * 121.42712 * 16 11 10 19 19 C 1.34773 * 119.99969 * 204.03128 * 18 16 11 20 20 O 1.21281 * 120.00220 * 0.02562 * 19 18 16 21 21 C 1.50706 * 120.00080 * 180.02562 * 19 18 16 22 22 C 1.54634 * 111.03517 * 295.33925 * 21 19 18 23 23 C 1.51168 * 104.69177 * 217.36231 * 22 21 19 24 24 C 1.30526 * 111.12105 * 16.37759 * 23 22 21 25 25 C 1.51098 * 111.10416 * 0.03568 * 24 23 22 26 26 H 0.97001 * 120.00070 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00351 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.46991 * 60.00232 * 10 9 7 29 29 H 1.08999 * 109.47216 * 300.00203 * 10 9 7 30 30 H 1.08998 * 110.48448 * 261.57410 * 13 11 10 31 31 H 1.08997 * 110.48527 * 24.21808 * 13 11 10 32 32 H 1.09001 * 110.75359 * 80.37709 * 14 13 11 33 33 H 1.09002 * 110.75605 * 203.55383 * 14 13 11 34 34 H 1.09001 * 110.50765 * 279.29649 * 15 14 13 35 35 H 1.08999 * 110.52814 * 156.61208 * 15 14 13 36 36 H 0.97005 * 119.99811 * 24.31181 * 18 16 11 37 37 H 1.08995 * 110.90919 * 59.29809 * 21 19 18 38 38 H 1.09000 * 110.38721 * 336.14212 * 22 21 19 39 39 H 1.08996 * 110.39269 * 98.51737 * 22 21 19 40 40 H 1.08009 * 124.43185 * 196.40713 * 23 22 21 41 41 H 1.08004 * 124.44759 * 180.02562 * 24 23 22 42 42 H 1.08998 * 110.39053 * 224.75300 * 25 24 23 43 43 H 1.09004 * 110.48511 * 102.42219 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.3592 -4.7086 0.8242 13 6 0.3053 -4.8658 -1.3426 14 6 0.1428 -6.3780 -1.6353 15 6 1.4893 -6.9684 -1.1443 16 6 1.8159 -6.1562 0.1259 17 1 2.8891 -5.9763 0.1885 18 7 1.3586 -6.8792 1.3153 19 6 2.1604 -7.7918 1.8989 20 8 3.2608 -8.0142 1.4398 21 6 1.6898 -8.5359 3.1220 22 6 1.4865 -7.5721 4.3141 23 6 1.9488 -8.3539 5.5224 24 6 2.6635 -9.3873 5.1688 25 6 2.7981 -9.4671 3.6659 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 -0.0002 28 1 2.6847 -3.7146 0.8905 29 1 2.6848 -3.7146 -0.8894 30 1 -0.6700 -4.3888 -1.2462 31 1 0.8897 -4.3860 -2.1276 32 1 -0.6908 -6.7937 -1.0691 33 1 0.0077 -6.5526 -2.7028 34 1 2.2650 -6.8277 -1.8970 35 1 1.3779 -8.0255 -0.9030 36 1 0.4771 -6.7040 1.6803 37 1 0.7781 -9.0945 2.9107 38 1 2.0944 -6.6764 4.1862 39 1 0.4339 -7.3067 4.4126 40 1 1.7176 -8.0919 6.5444 41 1 3.1013 -10.0926 5.8597 42 1 2.6366 -10.4894 3.3239 43 1 3.7798 -9.1129 3.3515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732615452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:42 Heat of formation + Delta-G solvation = -45.793080 kcal Electronic energy + Delta-G solvation = -21721.985732 eV Core-core repulsion = 18572.788837 eV Total energy + Delta-G solvation = -3149.196895 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44339 -39.72597 -38.25036 -36.32885 -34.61190 -33.26626 -30.81552 -30.17472 -29.12084 -28.42158 -26.32529 -24.23696 -23.26608 -21.69047 -21.10651 -20.43367 -19.67031 -19.20135 -18.11622 -17.54627 -17.08580 -16.53177 -16.33101 -15.91724 -15.42948 -15.31626 -14.99605 -14.82345 -14.45100 -13.82467 -13.51413 -13.36805 -13.19680 -13.03458 -12.82300 -12.72577 -12.61074 -12.47651 -12.21351 -12.10208 -12.04683 -11.93733 -11.87540 -11.73093 -11.63263 -11.46903 -10.94566 -10.79831 -10.04842 -9.79837 -9.01495 -7.96517 -5.25140 1.36877 1.46455 1.49102 1.55385 1.61942 2.18598 2.55205 3.36276 3.45813 3.49928 3.62385 3.69743 3.88470 3.95362 4.14558 4.26279 4.37760 4.40346 4.46907 4.52420 4.60168 4.64079 4.67067 4.76645 4.78682 4.81891 4.93722 4.97973 5.00276 5.03868 5.11842 5.17304 5.20581 5.25138 5.35739 5.46564 5.49884 5.60802 5.64609 5.99258 6.25784 6.57376 7.26062 7.32871 8.06975 8.33188 9.26442 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.003835 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.897720 B = 7299.136048 C = 8258.827160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.090 4.090 12 H 0.082 0.918 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.123 4.123 16 C 0.151 3.849 17 H 0.065 0.935 18 N -0.707 5.707 19 C 0.520 3.480 20 O -0.584 6.584 21 C -0.111 4.111 22 C -0.093 4.093 23 C -0.171 4.171 24 C -0.168 4.168 25 C -0.091 4.091 26 H 0.253 0.747 27 H 0.377 0.623 28 H 0.007 0.993 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.413 0.587 37 H 0.133 0.867 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -21.213 6.418 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.035 3.965 11 C -0.109 4.109 12 H 0.100 0.900 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.162 4.162 16 C 0.046 3.954 17 H 0.083 0.917 18 N -0.358 5.358 19 C 0.307 3.693 20 O -0.464 6.464 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.189 4.189 24 C -0.186 4.186 25 C -0.128 4.128 26 H 0.061 0.939 27 H 0.210 0.790 28 H 0.025 0.975 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.250 0.750 37 H 0.150 0.850 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.102 0.898 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.511 -21.246 6.078 22.104 hybrid contribution -0.018 1.421 0.098 1.424 sum -0.528 -19.825 6.176 20.771 Atomic orbital electron populations 1.69788 1.06416 1.26229 1.59126 1.25512 0.96426 1.00873 1.03409 0.85245 0.77301 0.79296 0.78118 1.20525 1.21754 1.20556 1.19566 0.91359 0.85590 1.41851 0.91269 1.42452 1.05630 1.00740 1.89348 1.20830 0.93658 0.85153 0.96899 1.22049 0.96943 0.92361 0.99541 0.90000 1.22309 0.99749 0.97308 0.95531 1.22490 0.96915 0.93529 1.01820 1.22693 0.98289 0.99177 0.96023 1.21420 0.98302 0.90276 0.85424 0.91669 1.46078 1.19999 1.40228 1.29519 1.20924 0.84193 0.79315 0.84844 1.90672 1.22778 1.66677 1.66228 1.22224 1.01670 0.97479 0.91782 1.21384 1.03175 0.97186 0.91258 1.23420 0.99825 0.96344 0.99262 1.23436 0.99644 0.99462 0.96064 1.21280 0.98298 0.99775 0.93456 0.93857 0.79038 0.97476 0.96575 0.91807 0.92789 0.90055 0.90353 0.91169 0.90959 0.75009 0.84962 0.91989 0.88184 0.83915 0.83952 0.89779 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.64 13.06 21.65 0.28 -58.36 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -37.85 5.45 -343.43 -1.87 -39.72 16 10 C 0.16 6.68 5.32 86.38 0.46 7.14 16 11 C -0.09 -2.77 2.73 -10.07 -0.03 -2.80 16 12 H 0.08 2.47 7.61 -2.38 -0.02 2.46 16 13 C -0.11 -3.21 6.08 31.67 0.19 -3.02 16 14 C -0.11 -2.36 6.91 31.93 0.22 -2.14 16 15 C -0.12 -2.91 6.54 31.71 0.21 -2.70 16 16 C 0.15 4.15 2.88 45.71 0.13 4.28 16 17 H 0.07 2.16 7.12 -2.39 -0.02 2.14 16 18 N -0.71 -15.97 5.03 -439.09 -2.21 -18.18 16 19 C 0.52 12.95 7.05 87.66 0.62 13.57 16 20 O -0.58 -19.64 15.21 -3.03 -0.05 -19.68 16 21 C -0.11 -1.96 3.54 -10.43 -0.04 -1.99 16 22 C -0.09 -1.54 6.37 30.55 0.19 -1.34 16 23 C -0.17 -2.61 10.78 26.28 0.28 -2.32 16 24 C -0.17 -2.63 10.77 26.26 0.28 -2.35 16 25 C -0.09 -1.71 6.16 30.53 0.19 -1.52 16 26 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 27 H 0.38 20.07 7.55 -92.71 -0.70 19.37 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.02 0.69 8.00 -2.39 -0.02 0.67 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.77 7.76 -2.39 -0.02 1.75 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.62 8.04 -2.39 -0.02 1.61 16 36 H 0.41 7.13 8.31 -92.70 -0.77 6.36 16 37 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.30 7.88 -2.39 -0.02 1.28 16 39 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.65 7.00 -2.38 -0.02 1.63 16 Total: -1.00 -69.60 346.92 1.73 -67.86 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -0.47 Total: 31.89 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 4.02 Total: -12.29 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -3.80 Total: -116.26 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.68 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -69.60 1.73 -67.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.070 kcal (2) G-P(sol) polarization free energy of solvation -69.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds