Wall clock time and date at job start Tue Mar 31 2020 00:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47351 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.43801 * 56.08793 * 11 10 9 13 13 C 1.54269 * 110.48763 * 293.54736 * 11 10 9 14 14 C 1.53876 * 106.60149 * 217.70747 * 13 11 10 15 15 C 1.54270 * 106.59532 * 0.02562 * 14 13 11 16 16 C 1.54883 * 104.19794 * 23.60476 * 15 14 13 17 17 H 1.09003 * 110.75252 * 80.37214 * 16 15 14 18 18 N 1.46495 * 110.75836 * 203.74118 * 16 15 14 19 19 C 1.34783 * 120.00043 * 268.33233 * 18 16 15 20 20 O 1.21279 * 119.99993 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99712 * 180.02562 * 19 18 16 22 22 C 1.54638 * 111.03515 * 295.32732 * 21 19 18 23 23 C 1.51159 * 104.69588 * 217.36240 * 22 21 19 24 24 C 1.30528 * 111.11928 * 16.38950 * 23 22 21 25 25 C 1.51100 * 111.10309 * 0.02741 * 24 23 22 26 26 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 27 27 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46981 * 300.00453 * 10 9 7 29 29 H 1.09002 * 109.46732 * 60.00394 * 10 9 7 30 30 H 1.09000 * 110.03473 * 336.99910 * 13 11 10 31 31 H 1.09008 * 110.02995 * 98.42722 * 13 11 10 32 32 H 1.08997 * 110.02863 * 119.28398 * 14 13 11 33 33 H 1.08997 * 110.03356 * 240.66966 * 14 13 11 34 34 H 1.08995 * 110.48487 * 142.28485 * 15 14 13 35 35 H 1.09001 * 110.48515 * 264.79511 * 15 14 13 36 36 H 0.96999 * 119.99808 * 88.33060 * 18 16 15 37 37 H 1.08999 * 110.91734 * 59.29555 * 21 19 18 38 38 H 1.09001 * 110.39154 * 336.15326 * 22 21 19 39 39 H 1.09000 * 110.38610 * 98.52274 * 22 21 19 40 40 H 1.08001 * 124.43571 * 196.43086 * 23 22 21 41 41 H 1.08001 * 124.44810 * 180.02562 * 24 23 22 42 42 H 1.09007 * 110.38537 * 224.75740 * 25 24 23 43 43 H 1.08992 * 110.38669 * 102.38016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.0640 -4.8196 0.0022 12 1 0.3832 -4.7389 -0.8452 13 6 0.2749 -4.8546 1.3273 14 6 0.0923 -6.3385 1.6913 15 6 0.7775 -7.1535 0.5749 16 6 1.8149 -6.1743 -0.0282 17 1 2.7119 -6.1330 0.5897 18 7 2.1474 -6.5525 -1.4039 19 6 3.1880 -7.3748 -1.6439 20 8 3.8494 -7.8011 -0.7211 21 6 3.5303 -7.7634 -3.0592 22 6 2.3931 -8.5948 -3.6970 23 6 3.1014 -9.6274 -4.5437 24 6 4.3604 -9.7236 -4.2128 25 6 4.7020 -8.7721 -3.0898 26 1 -0.4849 -0.8401 0.0004 27 1 0.3557 -2.3881 0.0016 28 1 2.6842 -3.7148 -0.8888 29 1 2.6854 -3.7140 0.8912 30 1 0.8364 -4.3445 2.1100 31 1 -0.6977 -4.3802 1.1953 32 1 0.5654 -6.5486 2.6505 33 1 -0.9687 -6.5840 1.7367 34 1 1.2763 -8.0281 0.9924 35 1 0.0502 -7.4540 -0.1793 36 1 1.6186 -6.2113 -2.1420 37 1 3.7561 -6.8829 -3.6607 38 1 1.7985 -9.0811 -2.9237 39 1 1.7621 -7.9604 -4.3195 40 1 2.6280 -10.2087 -5.3211 41 1 5.0653 -10.3952 -4.6802 42 1 5.6400 -8.2581 -3.2998 43 1 4.7658 -9.3089 -2.1434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732615453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:45 Heat of formation + Delta-G solvation = -27.914283 kcal Electronic energy + Delta-G solvation = -21737.004561 eV Core-core repulsion = 18588.582949 eV Total energy + Delta-G solvation = -3148.421612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.42480 -38.67458 -37.32041 -34.73896 -33.67907 -31.45133 -30.03580 -28.45432 -28.34400 -27.33679 -24.23527 -22.81008 -22.22417 -20.48391 -20.33147 -19.27117 -19.02642 -17.50443 -17.09847 -16.66237 -16.20939 -15.26992 -15.02203 -14.44497 -14.16048 -13.72102 -13.59825 -13.28655 -13.16485 -13.06400 -12.77416 -12.42541 -12.28824 -12.10031 -11.80719 -11.52205 -11.39391 -11.11567 -11.01707 -10.74708 -10.67718 -10.51488 -10.42844 -10.15149 -10.03677 -9.79973 -9.21263 -9.16049 -8.93654 -8.86770 -6.98864 -6.10127 -3.09234 1.98187 2.59980 3.14616 3.52330 3.58719 3.68489 4.22251 4.34507 4.54087 4.66732 4.77719 4.78529 4.94482 4.98381 5.03131 5.32077 5.38712 5.39050 5.49985 5.51898 5.57201 5.62305 5.63483 5.67299 5.73669 5.75424 5.85423 5.93831 5.99611 6.04715 6.20447 6.23121 6.24445 6.40470 6.50164 6.54733 6.59459 6.70538 6.83948 7.50960 7.83190 8.21392 8.76830 9.24211 10.10530 10.25858 11.38796 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.003789 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.459741 B = 7387.264021 C = 8299.062798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.046 4.046 3 Si 1.085 2.915 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.330 4.330 8 H 0.064 0.936 9 N -0.742 5.742 10 C 0.167 3.833 11 C -0.104 4.104 12 H 0.076 0.924 13 C -0.113 4.113 14 C -0.122 4.122 15 C -0.131 4.131 16 C 0.146 3.854 17 H 0.098 0.902 18 N -0.716 5.716 19 C 0.524 3.476 20 O -0.541 6.541 21 C -0.118 4.118 22 C -0.089 4.089 23 C -0.172 4.172 24 C -0.161 4.161 25 C -0.088 4.088 26 H 0.255 0.745 27 H 0.367 0.633 28 H 0.018 0.982 29 H 0.021 0.979 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.401 0.599 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.075 0.925 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -19.990 -6.531 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.244 4.244 3 Si 0.916 3.084 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.388 5.388 10 C 0.040 3.960 11 C -0.123 4.123 12 H 0.095 0.905 13 C -0.151 4.151 14 C -0.160 4.160 15 C -0.170 4.170 16 C 0.040 3.960 17 H 0.116 0.884 18 N -0.366 5.366 19 C 0.310 3.690 20 O -0.419 6.419 21 C -0.140 4.140 22 C -0.126 4.126 23 C -0.190 4.190 24 C -0.179 4.179 25 C -0.125 4.125 26 H 0.066 0.934 27 H 0.200 0.800 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.235 0.765 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.093 0.907 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.567 -18.618 -5.845 19.837 hybrid contribution -0.381 -1.482 -0.462 1.599 sum 3.186 -20.100 -6.307 21.306 Atomic orbital electron populations 1.70824 1.06025 1.28379 1.53949 1.25763 0.97072 1.00965 1.00550 0.83153 0.73577 0.75038 0.76606 1.22139 1.22026 1.22002 1.20105 0.92073 0.85851 1.48092 0.91782 1.42348 1.04826 1.00890 1.90739 1.20608 0.92805 0.84688 0.97943 1.22433 0.97532 0.93703 0.98628 0.90526 1.22074 1.00555 0.95458 0.96998 1.22095 1.00250 0.95372 0.98288 1.22696 0.97875 0.98232 0.98227 1.22036 0.98228 0.93376 0.82320 0.88403 1.45985 1.32228 1.49043 1.09318 1.20344 0.79733 0.78100 0.90802 1.90679 1.50956 1.54273 1.45943 1.22202 0.97707 1.00159 0.93912 1.21326 0.96938 0.96104 0.98275 1.23212 0.95913 0.99919 0.99921 1.23335 0.97130 0.99717 0.97676 1.21283 0.97291 0.95129 0.98784 0.93406 0.80027 0.96422 0.96153 0.90947 0.91513 0.91830 0.91879 0.91568 0.91568 0.76462 0.87484 0.90292 0.90296 0.85627 0.85618 0.90662 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.31 13.70 55.49 0.76 -28.55 16 2 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 3 Si 1.09 26.31 29.92 -169.99 -5.09 21.22 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.33 -9.46 9.99 -15.06 -0.15 -9.61 16 8 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.74 -18.73 5.44 -59.91 -0.33 -19.06 16 10 C 0.17 3.42 5.57 -4.04 -0.02 3.39 16 11 C -0.10 -1.62 2.55 -88.95 -0.23 -1.85 16 12 H 0.08 1.17 8.02 -51.93 -0.42 0.76 16 13 C -0.11 -1.70 6.05 -25.61 -0.15 -1.85 16 14 C -0.12 -1.49 6.80 -25.61 -0.17 -1.67 16 15 C -0.13 -1.60 6.51 -25.07 -0.16 -1.76 16 16 C 0.15 2.02 2.69 -65.93 -0.18 1.84 16 17 H 0.10 1.57 7.47 -51.93 -0.39 1.19 16 18 N -0.72 -8.74 5.17 -51.87 -0.27 -9.01 16 19 C 0.52 6.86 7.06 -10.98 -0.08 6.78 16 20 O -0.54 -9.04 15.18 5.56 0.08 -8.96 16 21 C -0.12 -1.19 3.54 -90.05 -0.32 -1.51 16 22 C -0.09 -0.74 6.37 -26.80 -0.17 -0.91 16 23 C -0.17 -1.38 10.78 -35.67 -0.38 -1.76 16 24 C -0.16 -1.36 10.78 -35.70 -0.38 -1.74 16 25 C -0.09 -0.88 6.16 -26.83 -0.17 -1.05 16 26 H 0.25 7.74 6.77 -40.82 -0.28 7.46 16 27 H 0.37 9.35 6.35 -40.82 -0.26 9.09 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 30 H 0.07 1.21 7.77 -51.93 -0.40 0.81 16 31 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.40 4.11 8.57 -40.82 -0.35 3.76 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.09 1.11 7.01 -51.93 -0.36 0.75 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -33.28 346.20 -9.43 -42.71 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -7.14 Total: 9.58 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.67 Total: -13.15 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.17 Total: -56.62 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.08 Total: -8.96 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -5.09 Total: 21.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.28 -9.43 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.794 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds