Wall clock time and date at job start Tue Mar 31 2020 00:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47351 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.43801 * 56.08793 * 11 10 9 13 13 C 1.54269 * 110.48763 * 293.54736 * 11 10 9 14 14 C 1.53876 * 106.60149 * 217.70747 * 13 11 10 15 15 C 1.54270 * 106.59532 * 0.02562 * 14 13 11 16 16 C 1.54883 * 104.19794 * 23.60476 * 15 14 13 17 17 H 1.09003 * 110.75252 * 80.37214 * 16 15 14 18 18 N 1.46495 * 110.75836 * 203.74118 * 16 15 14 19 19 C 1.34783 * 120.00043 * 268.33233 * 18 16 15 20 20 O 1.21279 * 119.99993 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99712 * 180.02562 * 19 18 16 22 22 C 1.54638 * 111.03515 * 295.32732 * 21 19 18 23 23 C 1.51159 * 104.69588 * 217.36240 * 22 21 19 24 24 C 1.30528 * 111.11928 * 16.38950 * 23 22 21 25 25 C 1.51100 * 111.10309 * 0.02741 * 24 23 22 26 26 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 27 27 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46981 * 300.00453 * 10 9 7 29 29 H 1.09002 * 109.46732 * 60.00394 * 10 9 7 30 30 H 1.09000 * 110.03473 * 336.99910 * 13 11 10 31 31 H 1.09008 * 110.02995 * 98.42722 * 13 11 10 32 32 H 1.08997 * 110.02863 * 119.28398 * 14 13 11 33 33 H 1.08997 * 110.03356 * 240.66966 * 14 13 11 34 34 H 1.08995 * 110.48487 * 142.28485 * 15 14 13 35 35 H 1.09001 * 110.48515 * 264.79511 * 15 14 13 36 36 H 0.96999 * 119.99808 * 88.33060 * 18 16 15 37 37 H 1.08999 * 110.91734 * 59.29555 * 21 19 18 38 38 H 1.09001 * 110.39154 * 336.15326 * 22 21 19 39 39 H 1.09000 * 110.38610 * 98.52274 * 22 21 19 40 40 H 1.08001 * 124.43571 * 196.43086 * 23 22 21 41 41 H 1.08001 * 124.44810 * 180.02562 * 24 23 22 42 42 H 1.09007 * 110.38537 * 224.75740 * 25 24 23 43 43 H 1.08992 * 110.38669 * 102.38016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.0640 -4.8196 0.0022 12 1 0.3832 -4.7389 -0.8452 13 6 0.2749 -4.8546 1.3273 14 6 0.0923 -6.3385 1.6913 15 6 0.7775 -7.1535 0.5749 16 6 1.8149 -6.1743 -0.0282 17 1 2.7119 -6.1330 0.5897 18 7 2.1474 -6.5525 -1.4039 19 6 3.1880 -7.3748 -1.6439 20 8 3.8494 -7.8011 -0.7211 21 6 3.5303 -7.7634 -3.0592 22 6 2.3931 -8.5948 -3.6970 23 6 3.1014 -9.6274 -4.5437 24 6 4.3604 -9.7236 -4.2128 25 6 4.7020 -8.7721 -3.0898 26 1 -0.4849 -0.8401 0.0004 27 1 0.3557 -2.3881 0.0016 28 1 2.6842 -3.7148 -0.8888 29 1 2.6854 -3.7140 0.8912 30 1 0.8364 -4.3445 2.1100 31 1 -0.6977 -4.3802 1.1953 32 1 0.5654 -6.5486 2.6505 33 1 -0.9687 -6.5840 1.7367 34 1 1.2763 -8.0281 0.9924 35 1 0.0502 -7.4540 -0.1793 36 1 1.6186 -6.2113 -2.1420 37 1 3.7561 -6.8829 -3.6607 38 1 1.7985 -9.0811 -2.9237 39 1 1.7621 -7.9604 -4.3195 40 1 2.6280 -10.2087 -5.3211 41 1 5.0653 -10.3952 -4.6802 42 1 5.6400 -8.2581 -3.2998 43 1 4.7658 -9.3089 -2.1434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732615453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:45 Heat of formation + Delta-G solvation = -48.876795 kcal Electronic energy + Delta-G solvation = -21737.913564 eV Core-core repulsion = 18588.582949 eV Total energy + Delta-G solvation = -3149.330615 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44189 -39.75573 -38.30764 -36.65020 -34.83255 -33.33779 -30.86326 -30.01703 -29.13871 -28.38880 -26.09746 -24.39263 -23.42361 -21.65070 -21.36825 -20.42856 -19.67976 -19.42508 -18.26920 -17.72431 -17.03517 -16.92706 -16.07916 -15.80434 -15.52433 -15.48906 -15.11206 -14.99549 -14.36038 -13.87292 -13.70349 -13.65606 -13.18397 -13.04685 -12.77397 -12.69323 -12.63385 -12.48903 -12.19115 -12.12664 -12.07114 -11.92664 -11.87435 -11.72576 -11.38506 -11.25352 -10.96822 -10.87755 -10.07793 -9.80854 -9.13618 -8.42811 -5.36377 1.36019 1.56777 1.57132 1.68202 1.80611 2.13479 2.68221 3.33480 3.37437 3.46494 3.57629 3.63024 3.77903 3.88845 4.02077 4.21856 4.32029 4.35491 4.37806 4.42476 4.44017 4.57031 4.58714 4.63685 4.76176 4.81545 4.85927 4.92183 4.93943 5.03367 5.05869 5.15446 5.17255 5.18770 5.20593 5.39662 5.53526 5.55948 5.61179 5.98671 6.48480 6.51263 7.07192 7.19887 7.97381 8.08708 9.09644 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.003789 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.459741 B = 7387.264021 C = 8299.062798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.100 4.100 3 Si 1.131 2.869 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.338 4.338 8 H 0.059 0.941 9 N -0.751 5.751 10 C 0.169 3.831 11 C -0.091 4.091 12 H 0.087 0.913 13 C -0.112 4.112 14 C -0.113 4.113 15 C -0.121 4.121 16 C 0.151 3.849 17 H 0.072 0.928 18 N -0.708 5.708 19 C 0.522 3.478 20 O -0.583 6.583 21 C -0.116 4.116 22 C -0.087 4.087 23 C -0.167 4.167 24 C -0.171 4.171 25 C -0.091 4.091 26 H 0.246 0.754 27 H 0.364 0.636 28 H 0.013 0.987 29 H 0.007 0.993 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.413 0.587 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.075 0.925 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -20.940 -7.844 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.291 4.291 3 Si 0.956 3.044 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.470 4.470 8 H 0.078 0.922 9 N -0.396 5.396 10 C 0.042 3.958 11 C -0.110 4.110 12 H 0.105 0.895 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.160 4.160 16 C 0.045 3.955 17 H 0.091 0.909 18 N -0.359 5.359 19 C 0.310 3.690 20 O -0.463 6.463 21 C -0.138 4.138 22 C -0.124 4.124 23 C -0.184 4.184 24 C -0.188 4.188 25 C -0.129 4.129 26 H 0.057 0.943 27 H 0.196 0.804 28 H 0.031 0.969 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.094 0.906 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.122 -19.602 -7.178 21.107 hybrid contribution -0.202 -1.211 -0.031 1.228 sum 2.919 -20.813 -7.209 22.218 Atomic orbital electron populations 1.70932 1.06989 1.28025 1.56036 1.27179 0.97169 1.04479 1.00319 0.82563 0.73536 0.71515 0.76747 1.20115 1.21378 1.21605 1.20409 0.92168 0.87320 1.47079 0.92248 1.42487 1.04845 1.01643 1.90605 1.20688 0.93582 0.84750 0.96770 1.22278 0.96680 0.92566 0.99516 0.89502 1.22031 0.99719 0.97485 0.95813 1.22048 1.01685 0.92903 0.98463 1.22625 0.97432 0.97451 0.98443 1.21825 0.97550 0.92957 0.83133 0.90947 1.45917 1.32233 1.48667 1.09037 1.20894 0.79045 0.77385 0.91703 1.90663 1.52287 1.55823 1.47491 1.22236 0.98645 1.00916 0.91960 1.21361 0.96412 0.96262 0.98396 1.23438 0.95627 0.99482 0.99900 1.23411 0.97956 1.00031 0.97451 1.21277 0.97548 0.95511 0.98551 0.94343 0.80361 0.96922 0.97549 0.93341 0.91824 0.91424 0.89772 0.91571 0.89687 0.75028 0.86231 0.90678 0.88277 0.83470 0.84027 0.90640 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.62 13.70 21.65 0.30 -60.33 16 2 C -0.10 -5.85 5.50 84.86 0.47 -5.39 16 3 Si 1.13 52.65 29.92 68.60 2.05 54.70 16 4 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.34 -19.54 9.99 84.03 0.84 -18.70 16 8 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 9 N -0.75 -38.41 5.44 -343.46 -1.87 -40.28 16 10 C 0.17 7.00 5.57 86.38 0.48 7.48 16 11 C -0.09 -2.81 2.55 -9.71 -0.02 -2.83 16 12 H 0.09 2.54 8.02 -2.39 -0.02 2.52 16 13 C -0.11 -3.34 6.05 31.32 0.19 -3.15 16 14 C -0.11 -2.57 6.80 31.32 0.21 -2.35 16 15 C -0.12 -2.71 6.51 31.67 0.21 -2.50 16 16 C 0.15 4.11 2.69 46.29 0.12 4.23 16 17 H 0.07 2.38 7.47 -2.39 -0.02 2.36 16 18 N -0.71 -16.55 5.17 -436.41 -2.26 -18.81 16 19 C 0.52 13.42 7.06 87.66 0.62 14.04 16 20 O -0.58 -19.83 15.18 -3.03 -0.05 -19.87 16 21 C -0.12 -2.20 3.54 -10.42 -0.04 -2.24 16 22 C -0.09 -1.24 6.37 30.55 0.19 -1.05 16 23 C -0.17 -2.23 10.78 26.28 0.28 -1.95 16 24 C -0.17 -2.58 10.78 26.26 0.28 -2.30 16 25 C -0.09 -1.80 6.16 30.53 0.19 -1.61 16 26 H 0.25 15.19 6.77 -92.71 -0.63 14.56 16 27 H 0.36 18.85 6.35 -92.71 -0.59 18.26 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.01 0.29 8.05 -2.39 -0.02 0.27 16 30 H 0.05 1.66 7.77 -2.39 -0.02 1.64 16 31 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.41 7.68 8.57 -92.71 -0.79 6.89 16 37 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 1.16 7.88 -2.39 -0.02 1.14 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.07 1.73 7.01 -2.39 -0.02 1.71 16 Total: -1.00 -72.14 346.20 1.96 -70.18 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.25 Total: 32.71 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.03 Total: -18.31 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -3.83 Total: -119.41 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.05 Total: -19.87 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 2.05 Total: 54.70 kcal Total: -72.14 1.96 -70.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.301 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds