Wall clock time and date at job start Mon Mar 30 2020 23:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47051 * 270.00198 * 3 2 1 5 5 H 1.48496 * 109.47501 * 30.00029 * 3 2 1 6 6 H 1.48499 * 109.47322 * 150.00198 * 3 2 1 7 7 C 1.38809 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00230 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00281 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00095 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47274 * 180.02562 * 10 9 7 12 12 H 1.09010 * 110.05165 * 306.42043 * 11 10 9 13 13 C 1.54262 * 110.03116 * 67.83105 * 11 10 9 14 14 C 1.54887 * 104.19471 * 142.89745 * 13 11 10 15 15 C 1.54967 * 102.77795 * 322.08384 * 14 13 11 16 16 C 1.53872 * 110.03631 * 185.00430 * 11 10 9 17 17 H 1.09001 * 110.03522 * 121.38262 * 16 11 10 18 18 N 1.46501 * 110.02929 * 359.97438 * 16 11 10 19 19 C 1.34783 * 119.99713 * 155.69320 * 18 16 11 20 20 O 1.21615 * 119.99633 * 0.02562 * 19 18 16 21 21 C 1.47094 * 120.00020 * 180.02562 * 19 18 16 22 22 C 1.32613 * 124.62231 * 179.97438 * 21 19 18 23 23 C 1.51116 * 110.75931 * 180.02562 * 22 21 19 24 24 C 1.54577 * 104.83929 * 16.59621 * 23 22 21 25 25 C 1.51118 * 124.62021 * 359.97438 * 21 19 18 26 26 H 0.97001 * 119.99437 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99756 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.47015 * 60.00164 * 10 9 7 29 29 H 1.08998 * 109.47714 * 300.00075 * 10 9 7 30 30 H 1.08998 * 110.49017 * 261.57891 * 13 11 10 31 31 H 1.08997 * 110.48567 * 24.22376 * 13 11 10 32 32 H 1.08999 * 110.75735 * 80.37458 * 14 13 11 33 33 H 1.09005 * 110.75581 * 203.56414 * 14 13 11 34 34 H 1.08994 * 110.48141 * 279.23715 * 15 14 13 35 35 H 1.08999 * 110.53013 * 156.56243 * 15 14 13 36 36 H 0.97002 * 120.00412 * 335.69652 * 18 16 11 37 37 H 1.07999 * 124.62057 * 0.03519 * 22 21 19 38 38 H 1.08998 * 110.36323 * 257.75471 * 23 22 21 39 39 H 1.08997 * 110.36208 * 135.43812 * 23 22 21 40 40 H 1.09004 * 110.98332 * 93.07560 * 24 23 22 41 41 H 1.09001 * 110.98217 * 216.83188 * 24 23 22 42 42 H 1.08997 * 110.36305 * 44.54310 * 25 21 19 43 43 H 1.09001 * 110.36780 * 282.22302 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.3586 -4.7090 0.8226 13 6 0.3054 -4.8657 -1.3437 14 6 0.1428 -6.3780 -1.6364 15 6 1.4884 -6.9689 -1.1448 16 6 1.8159 -6.1562 0.1249 17 1 1.4762 -6.6938 1.0102 18 7 3.2585 -5.9145 0.2072 19 6 4.0617 -6.8235 0.7947 20 8 3.5889 -7.8446 1.2560 21 6 5.5100 -6.5806 0.8778 22 6 6.3824 -7.4099 1.4345 23 6 7.7836 -6.8508 1.3474 24 6 7.5922 -5.3510 1.0262 25 6 6.2067 -5.3519 0.3405 26 1 -0.4849 0.8401 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 2.6848 -3.7145 0.8895 29 1 2.6848 -3.7146 -0.8905 30 1 -0.6699 -4.3887 -1.2473 31 1 0.8899 -4.3859 -2.1287 32 1 -0.6907 -6.7936 -1.0702 33 1 0.0079 -6.5524 -2.7039 34 1 2.2640 -6.8292 -1.8978 35 1 1.3761 -8.0257 -0.9029 36 1 3.6356 -5.1002 -0.1611 37 1 6.1263 -8.3559 1.8881 38 1 8.3390 -7.3420 0.5484 39 1 8.3002 -6.9720 2.2995 40 1 7.5761 -4.7553 1.9389 41 1 8.3653 -4.9960 0.3446 42 1 5.6508 -4.4533 0.6078 43 1 6.3187 -5.4220 -0.7415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732616036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:43 Heat of formation + Delta-G solvation = -22.705306 kcal Electronic energy + Delta-G solvation = -21988.398663 eV Core-core repulsion = 18840.202929 eV Total energy + Delta-G solvation = -3148.195734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23085 -38.59723 -37.32040 -34.37058 -33.53370 -31.41586 -29.70215 -28.69668 -28.51562 -27.10926 -24.57076 -22.56134 -22.33538 -21.01963 -20.44599 -18.97284 -18.78276 -17.37102 -16.97136 -16.06544 -15.68346 -15.19338 -14.71592 -14.70928 -14.42720 -13.77231 -13.54852 -13.13398 -12.96335 -12.90401 -12.83550 -12.19143 -12.09475 -11.80443 -11.64612 -11.38418 -11.30367 -11.28397 -10.88052 -10.83208 -10.79109 -10.47991 -10.38569 -10.29019 -9.96916 -9.80424 -9.69392 -9.10783 -8.93442 -8.76831 -6.95606 -5.79305 -3.08254 1.34606 3.35674 3.37852 3.41239 3.46360 3.48171 4.36718 4.42215 4.54948 4.74244 4.83023 4.85642 4.95996 5.12897 5.13505 5.45227 5.47891 5.50782 5.53073 5.60573 5.65455 5.68190 5.71212 5.79193 5.81095 5.87644 5.94937 6.00892 6.07243 6.18734 6.21330 6.22537 6.33170 6.43811 6.45818 6.59057 6.64154 6.75367 6.83289 7.65374 7.69285 8.35721 8.39394 9.50744 10.08133 10.43014 11.43471 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.005156 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.130038 B = 5429.127626 C = 7268.312095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.157 3.843 11 C -0.108 4.108 12 H 0.082 0.918 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.148 3.852 17 H 0.088 0.912 18 N -0.714 5.714 19 C 0.563 3.437 20 O -0.551 6.551 21 C -0.188 4.188 22 C -0.081 4.081 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.096 4.096 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.408 0.592 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.754 -14.478 -1.099 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.029 3.971 11 C -0.127 4.127 12 H 0.100 0.900 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.043 3.957 17 H 0.107 0.893 18 N -0.367 5.367 19 C 0.351 3.649 20 O -0.431 6.431 21 C -0.191 4.191 22 C -0.101 4.101 23 C -0.143 4.143 24 C -0.160 4.160 25 C -0.133 4.133 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.154 0.846 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.538 -15.035 -0.770 18.377 hybrid contribution 0.263 1.363 -0.155 1.397 sum 10.801 -13.672 -0.925 17.448 Atomic orbital electron populations 1.69661 1.05116 1.25677 1.57575 1.24732 0.95505 0.97669 1.02912 0.86203 0.78662 0.83886 0.77510 1.21707 1.21756 1.20780 1.19205 0.90970 0.84166 1.42919 0.91258 1.42323 1.05898 0.99708 1.89329 1.20684 0.93404 0.85694 0.97277 1.22220 0.97982 0.93497 0.99039 0.89951 1.22356 1.00774 0.95104 0.96666 1.22503 0.96808 0.96307 1.00635 1.22769 0.97774 0.99349 0.97072 1.21658 0.79264 0.96030 0.98775 0.89348 1.46323 1.07903 1.23226 1.59220 1.18018 0.86049 0.83180 0.77657 1.90754 1.76553 1.27332 1.48469 1.21903 0.92942 0.99534 1.04713 1.24002 0.94229 0.98121 0.93736 1.21471 0.94658 0.95775 1.02380 1.22426 0.96660 0.95879 1.01061 1.21296 0.95484 0.96063 1.00449 0.93485 0.78134 0.96132 0.96559 0.91173 0.91021 0.91579 0.91648 0.91385 0.91519 0.75356 0.84612 0.89828 0.90363 0.90692 0.90516 0.90286 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.41 16 9 N -0.73 -17.95 5.45 -59.91 -0.33 -18.28 16 10 C 0.16 3.03 4.18 -4.04 -0.02 3.01 16 11 C -0.11 -1.75 2.96 -89.50 -0.26 -2.01 16 12 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 13 C -0.11 -1.69 6.08 -25.08 -0.15 -1.84 16 14 C -0.12 -1.56 6.91 -24.70 -0.17 -1.73 16 15 C -0.13 -1.72 6.54 -25.03 -0.16 -1.88 16 16 C 0.15 2.18 3.21 -66.81 -0.21 1.97 16 17 H 0.09 1.39 7.59 -51.93 -0.39 1.00 16 18 N -0.71 -10.32 4.40 -53.90 -0.24 -10.56 16 19 C 0.56 8.57 7.79 -12.67 -0.10 8.47 16 20 O -0.55 -9.99 16.43 5.26 0.09 -9.90 16 21 C -0.19 -2.34 6.09 -102.73 -0.63 -2.96 16 22 C -0.08 -0.88 10.43 -36.01 -0.38 -1.25 16 23 C -0.11 -0.85 6.80 -26.85 -0.18 -1.03 16 24 C -0.12 -1.04 7.16 -25.07 -0.18 -1.22 16 25 C -0.10 -1.00 6.02 -26.84 -0.16 -1.16 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.38 10.03 7.55 -40.82 -0.31 9.72 16 28 H 0.02 0.41 7.41 -51.92 -0.38 0.03 16 29 H 0.02 0.31 7.11 -51.93 -0.37 -0.06 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.17 7.76 -51.93 -0.40 0.76 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.41 5.65 4.87 -40.82 -0.20 5.45 16 37 H 0.14 1.45 8.03 -52.49 -0.42 1.03 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.88 7.83 -51.93 -0.41 0.47 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -31.54 343.65 -9.53 -41.07 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.08 Total: 11.40 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.85 Total: -8.84 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.16 Total: -55.95 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.54 -9.53 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732616036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.361 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds