Wall clock time and date at job start Mon Mar 30 2020 23:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47051 * 270.00198 * 3 2 1 5 5 H 1.48496 * 109.47501 * 30.00029 * 3 2 1 6 6 H 1.48499 * 109.47322 * 150.00198 * 3 2 1 7 7 C 1.38809 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00230 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00281 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00095 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47274 * 180.02562 * 10 9 7 12 12 H 1.09010 * 110.05165 * 306.42043 * 11 10 9 13 13 C 1.54262 * 110.03116 * 67.83105 * 11 10 9 14 14 C 1.54887 * 104.19471 * 142.89745 * 13 11 10 15 15 C 1.54967 * 102.77795 * 322.08384 * 14 13 11 16 16 C 1.53872 * 110.03631 * 185.00430 * 11 10 9 17 17 H 1.09001 * 110.03522 * 121.38262 * 16 11 10 18 18 N 1.46501 * 110.02929 * 359.97438 * 16 11 10 19 19 C 1.34783 * 119.99713 * 155.69320 * 18 16 11 20 20 O 1.21615 * 119.99633 * 0.02562 * 19 18 16 21 21 C 1.47094 * 120.00020 * 180.02562 * 19 18 16 22 22 C 1.32613 * 124.62231 * 179.97438 * 21 19 18 23 23 C 1.51116 * 110.75931 * 180.02562 * 22 21 19 24 24 C 1.54577 * 104.83929 * 16.59621 * 23 22 21 25 25 C 1.51118 * 124.62021 * 359.97438 * 21 19 18 26 26 H 0.97001 * 119.99437 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99756 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.47015 * 60.00164 * 10 9 7 29 29 H 1.08998 * 109.47714 * 300.00075 * 10 9 7 30 30 H 1.08998 * 110.49017 * 261.57891 * 13 11 10 31 31 H 1.08997 * 110.48567 * 24.22376 * 13 11 10 32 32 H 1.08999 * 110.75735 * 80.37458 * 14 13 11 33 33 H 1.09005 * 110.75581 * 203.56414 * 14 13 11 34 34 H 1.08994 * 110.48141 * 279.23715 * 15 14 13 35 35 H 1.08999 * 110.53013 * 156.56243 * 15 14 13 36 36 H 0.97002 * 120.00412 * 335.69652 * 18 16 11 37 37 H 1.07999 * 124.62057 * 0.03519 * 22 21 19 38 38 H 1.08998 * 110.36323 * 257.75471 * 23 22 21 39 39 H 1.08997 * 110.36208 * 135.43812 * 23 22 21 40 40 H 1.09004 * 110.98332 * 93.07560 * 24 23 22 41 41 H 1.09001 * 110.98217 * 216.83188 * 24 23 22 42 42 H 1.08997 * 110.36305 * 44.54310 * 25 21 19 43 43 H 1.09001 * 110.36780 * 282.22302 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.3586 -4.7090 0.8226 13 6 0.3054 -4.8657 -1.3437 14 6 0.1428 -6.3780 -1.6364 15 6 1.4884 -6.9689 -1.1448 16 6 1.8159 -6.1562 0.1249 17 1 1.4762 -6.6938 1.0102 18 7 3.2585 -5.9145 0.2072 19 6 4.0617 -6.8235 0.7947 20 8 3.5889 -7.8446 1.2560 21 6 5.5100 -6.5806 0.8778 22 6 6.3824 -7.4099 1.4345 23 6 7.7836 -6.8508 1.3474 24 6 7.5922 -5.3510 1.0262 25 6 6.2067 -5.3519 0.3405 26 1 -0.4849 0.8401 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 2.6848 -3.7145 0.8895 29 1 2.6848 -3.7146 -0.8905 30 1 -0.6699 -4.3887 -1.2473 31 1 0.8899 -4.3859 -2.1287 32 1 -0.6907 -6.7936 -1.0702 33 1 0.0079 -6.5524 -2.7039 34 1 2.2640 -6.8292 -1.8978 35 1 1.3761 -8.0257 -0.9029 36 1 3.6356 -5.1002 -0.1611 37 1 6.1263 -8.3559 1.8881 38 1 8.3390 -7.3420 0.5484 39 1 8.3002 -6.9720 2.2995 40 1 7.5761 -4.7553 1.9389 41 1 8.3653 -4.9960 0.3446 42 1 5.6508 -4.4533 0.6078 43 1 6.3187 -5.4220 -0.7415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732616036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:43 Heat of formation + Delta-G solvation = -41.568188 kcal Electronic energy + Delta-G solvation = -21989.216619 eV Core-core repulsion = 18840.202929 eV Total energy + Delta-G solvation = -3149.013690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39261 -39.67126 -38.39272 -36.22638 -34.73280 -33.30610 -30.60151 -30.16582 -29.46980 -28.17691 -26.35028 -24.23547 -23.48574 -21.80910 -21.54894 -20.33876 -19.94324 -19.04190 -18.17550 -17.28793 -16.66011 -16.47674 -16.37370 -15.86309 -15.68486 -15.25787 -15.07750 -14.83782 -14.43565 -13.85219 -13.60261 -13.50246 -13.14794 -12.95928 -12.86250 -12.75481 -12.59483 -12.34625 -12.17996 -12.06328 -12.01461 -11.95087 -11.79027 -11.73352 -11.55993 -11.46786 -10.98437 -10.93080 -10.15633 -9.81335 -9.00055 -7.94247 -5.23268 0.38397 1.48507 1.49913 1.58156 2.22620 2.26875 2.56612 3.38439 3.42537 3.57114 3.65833 3.66479 3.84342 4.09359 4.16255 4.20238 4.31642 4.36913 4.46071 4.49122 4.52304 4.65022 4.74224 4.78035 4.80815 4.90040 4.90631 4.96632 4.97632 5.06621 5.17419 5.20200 5.24879 5.32641 5.34425 5.38363 5.46651 5.50117 5.55031 5.57746 6.27230 6.52297 7.18412 7.34389 8.08864 8.32801 9.29338 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.005156 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.130038 B = 5429.127626 C = 7268.312095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.741 5.741 10 C 0.161 3.839 11 C -0.101 4.101 12 H 0.071 0.929 13 C -0.109 4.109 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.151 3.849 17 H 0.077 0.923 18 N -0.711 5.711 19 C 0.558 3.442 20 O -0.588 6.588 21 C -0.219 4.219 22 C -0.065 4.065 23 C -0.101 4.101 24 C -0.120 4.120 25 C -0.094 4.094 26 H 0.251 0.749 27 H 0.375 0.625 28 H 0.018 0.982 29 H 0.028 0.972 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.870 -15.062 -1.633 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.034 3.966 11 C -0.120 4.120 12 H 0.090 0.910 13 C -0.147 4.147 14 C -0.150 4.150 15 C -0.162 4.162 16 C 0.046 3.954 17 H 0.095 0.905 18 N -0.364 5.364 19 C 0.349 3.651 20 O -0.471 6.471 21 C -0.221 4.221 22 C -0.085 4.085 23 C -0.137 4.137 24 C -0.158 4.158 25 C -0.131 4.131 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.151 0.849 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.694 -15.636 -1.314 20.183 hybrid contribution -0.356 1.456 0.054 1.500 sum 12.338 -14.180 -1.260 18.839 Atomic orbital electron populations 1.69820 1.06649 1.26038 1.59454 1.25544 0.96338 1.01041 1.03647 0.85164 0.77742 0.79538 0.77467 1.21288 1.22436 1.19349 1.19635 0.91569 0.85223 1.41239 0.90427 1.42519 1.05649 1.00900 1.89267 1.20785 0.93786 0.84724 0.97294 1.22116 0.97347 0.93064 0.99487 0.91016 1.22292 0.99773 0.97141 0.95480 1.22456 0.96758 0.93793 1.02003 1.22709 0.98207 0.99226 0.96059 1.21589 0.79392 0.95078 0.99370 0.90454 1.46300 1.07729 1.23268 1.59057 1.18495 0.87310 0.82544 0.76783 1.90724 1.77453 1.28735 1.50144 1.21912 0.91543 1.01466 1.07221 1.24348 0.95649 0.97371 0.91151 1.21542 0.92920 0.95250 1.04028 1.22461 0.95809 0.96284 1.01207 1.21308 0.96282 0.94429 1.01096 0.94048 0.79343 0.96422 0.95447 0.92134 0.92104 0.90502 0.89780 0.91028 0.91063 0.75064 0.84906 0.87809 0.88589 0.90927 0.88609 0.91663 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -36.91 5.45 -343.45 -1.87 -38.78 16 10 C 0.16 6.21 4.18 86.38 0.36 6.57 16 11 C -0.10 -3.28 2.96 -10.07 -0.03 -3.31 16 12 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 13 C -0.11 -3.26 6.08 31.67 0.19 -3.07 16 14 C -0.11 -2.62 6.91 31.91 0.22 -2.40 16 15 C -0.12 -3.09 6.54 31.70 0.21 -2.88 16 16 C 0.15 4.43 3.21 45.72 0.15 4.57 16 17 H 0.08 2.46 7.59 -2.39 -0.02 2.44 16 18 N -0.71 -20.49 4.40 -442.69 -1.95 -22.43 16 19 C 0.56 17.00 7.79 86.57 0.67 17.67 16 20 O -0.59 -21.51 16.43 -4.08 -0.07 -21.58 16 21 C -0.22 -5.25 6.09 -18.57 -0.11 -5.37 16 22 C -0.07 -1.30 10.43 24.66 0.26 -1.05 16 23 C -0.10 -1.31 6.80 30.52 0.21 -1.10 16 24 C -0.12 -1.73 7.16 31.67 0.23 -1.50 16 25 C -0.09 -1.82 6.02 30.52 0.18 -1.64 16 26 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.37 19.99 7.55 -92.71 -0.70 19.29 16 28 H 0.02 0.71 7.41 -2.38 -0.02 0.69 16 29 H 0.03 1.02 7.11 -2.39 -0.02 1.01 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.95 7.76 -2.39 -0.02 1.93 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.07 1.75 8.05 -2.39 -0.02 1.73 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.41 11.28 4.87 -92.71 -0.45 10.83 16 37 H 0.13 2.70 8.03 -2.91 -0.02 2.67 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.42 7.83 -2.39 -0.02 1.40 16 43 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -67.67 343.65 2.12 -65.55 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -0.15 Total: 38.09 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 3.84 Total: -9.75 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -3.54 Total: -119.74 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.07 Total: -21.58 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -67.67 2.12 -65.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732616036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.985 kcal (2) G-P(sol) polarization free energy of solvation -67.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds