Wall clock time and date at job start Mon Mar 30 2020 23:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08991 * 110.43572 * 305.70452 * 11 10 9 13 13 C 1.54893 * 110.48149 * 68.24452 * 11 10 9 14 14 C 1.55032 * 102.68285 * 156.51618 * 13 11 10 15 15 C 1.54259 * 104.28073 * 322.23386 * 14 13 11 16 16 C 1.53881 * 106.60226 * 23.51626 * 15 14 13 17 17 H 1.08997 * 110.03068 * 240.71537 * 16 15 14 18 18 N 1.46492 * 110.07397 * 119.30448 * 16 15 14 19 19 C 1.34786 * 119.99812 * 87.81080 * 18 16 15 20 20 O 1.21608 * 119.99834 * 0.02562 * 19 18 16 21 21 C 1.47107 * 119.99840 * 179.97438 * 19 18 16 22 22 C 1.32610 * 124.61438 * 180.02562 * 21 19 18 23 23 C 1.51113 * 110.75342 * 180.02562 * 22 21 19 24 24 C 1.54576 * 104.84179 * 16.59502 * 23 22 21 25 25 C 1.51113 * 124.62047 * 359.72390 * 21 19 18 26 26 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 29 29 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 30 30 H 1.09004 * 110.75410 * 274.93271 * 13 11 10 31 31 H 1.08997 * 110.76095 * 38.30574 * 13 11 10 32 32 H 1.08997 * 110.52582 * 203.48238 * 14 13 11 33 33 H 1.09007 * 110.36279 * 80.89877 * 14 13 11 34 34 H 1.09001 * 110.03567 * 264.23098 * 15 14 13 35 35 H 1.09001 * 110.07365 * 142.82303 * 15 14 13 36 36 H 0.96998 * 120.00598 * 267.81121 * 18 16 15 37 37 H 1.07991 * 124.62530 * 359.97438 * 22 21 19 38 38 H 1.09000 * 110.36497 * 135.43608 * 23 22 21 39 39 H 1.09000 * 110.36560 * 257.75454 * 23 22 21 40 40 H 1.09001 * 110.98317 * 93.07665 * 24 23 22 41 41 H 1.09000 * 110.98457 * 216.87141 * 24 23 22 42 42 H 1.08998 * 110.36830 * 282.24125 * 25 21 19 43 43 H 1.08999 * 110.36341 * 44.56597 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8816 -1.5360 -0.8283 13 6 6.0509 -1.5637 1.3487 14 6 7.5592 -1.9156 1.4175 15 6 7.6460 -3.3360 0.8220 16 6 6.4107 -3.5115 -0.0786 17 1 5.7991 -4.3379 0.2835 18 7 6.8274 -3.7638 -1.4602 19 6 7.0702 -5.0242 -1.8713 20 8 6.9430 -5.9520 -1.0955 21 6 7.4881 -5.2776 -3.2588 22 6 7.7497 -6.4773 -3.7596 23 6 8.1513 -6.3750 -5.2128 24 6 8.5073 -4.8854 -5.4213 25 6 7.6715 -4.2069 -4.3093 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3622 0.0007 28 1 3.8484 -3.0428 0.8907 29 1 3.8490 -3.0424 -0.8892 30 1 5.9042 -0.4837 1.3369 31 1 5.5109 -2.0189 2.1790 32 1 7.9055 -1.9133 2.4510 33 1 8.1400 -1.2145 0.8180 34 1 7.6339 -4.0773 1.6210 35 1 8.5563 -3.4390 0.2313 36 1 6.9285 -3.0238 -2.0791 37 1 7.6854 -7.4013 -3.2044 38 1 9.0191 -7.0039 -5.4117 39 1 7.3196 -6.6600 -5.8571 40 1 9.5737 -4.7145 -5.2735 41 1 8.1917 -4.5428 -6.4068 42 1 6.7046 -3.8876 -4.6983 43 1 8.2138 -3.3574 -3.8944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732616038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:46 Heat of formation + Delta-G solvation = -26.135963 kcal Electronic energy + Delta-G solvation = -21686.696635 eV Core-core repulsion = 18538.352136 eV Total energy + Delta-G solvation = -3148.344498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25967 -38.65418 -37.43769 -34.65123 -33.56383 -31.54374 -29.82538 -29.05910 -28.76195 -27.30216 -24.62434 -22.54108 -21.80099 -21.15152 -20.37045 -19.91011 -18.65728 -17.62492 -17.12919 -16.47573 -15.91974 -15.09529 -15.02546 -14.44124 -14.35588 -13.91196 -13.72300 -13.26309 -13.08695 -13.00411 -12.65383 -12.36189 -12.24894 -11.94349 -11.84866 -11.65626 -11.54517 -11.45882 -11.08077 -10.95152 -10.81295 -10.54009 -10.48018 -10.41893 -10.07109 -9.87477 -9.58355 -9.22119 -8.93432 -8.88684 -7.21909 -5.75791 -3.11116 1.24231 3.20740 3.27289 3.36084 3.38698 3.44451 4.22699 4.29253 4.55641 4.59343 4.68216 4.73958 4.82103 4.96449 5.01417 5.32582 5.34139 5.40163 5.46940 5.48560 5.49464 5.56098 5.58863 5.65413 5.68863 5.71383 5.82170 5.85193 5.86677 5.98287 6.06622 6.16646 6.18763 6.32293 6.34877 6.44790 6.55696 6.69467 6.81917 7.54147 8.01082 8.24401 8.43278 9.22506 9.94609 10.14896 11.42830 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.004078 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.018310 B = 6865.277984 C = 7597.116328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.165 3.835 11 C -0.107 4.107 12 H 0.078 0.922 13 C -0.114 4.114 14 C -0.124 4.124 15 C -0.131 4.131 16 C 0.146 3.854 17 H 0.095 0.905 18 N -0.714 5.714 19 C 0.564 3.436 20 O -0.544 6.544 21 C -0.192 4.192 22 C -0.078 4.078 23 C -0.107 4.107 24 C -0.123 4.123 25 C -0.093 4.093 26 H 0.259 0.741 27 H 0.360 0.640 28 H 0.030 0.970 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.400 0.600 37 H 0.137 0.863 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.499 -8.215 -7.788 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.204 1.204 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.038 3.962 11 C -0.126 4.126 12 H 0.096 0.904 13 C -0.152 4.152 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.041 3.959 17 H 0.114 0.886 18 N -0.364 5.364 19 C 0.352 3.648 20 O -0.423 6.423 21 C -0.195 4.195 22 C -0.097 4.097 23 C -0.144 4.144 24 C -0.160 4.160 25 C -0.130 4.130 26 H 0.069 0.931 27 H 0.193 0.807 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.155 0.845 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 21.154 -8.947 -7.225 24.078 hybrid contribution 0.483 1.599 -0.303 1.697 sum 21.637 -7.348 -7.528 24.058 Atomic orbital electron populations 1.69710 1.05102 1.25763 1.57735 1.24672 0.95232 0.97161 1.02159 0.86538 0.79138 0.85020 0.77776 1.21048 1.20430 1.21756 1.19077 0.80677 0.94748 1.42766 0.89268 1.42673 1.03981 1.02132 1.91182 1.20658 0.87482 0.89298 0.98751 1.22485 0.96519 0.95005 0.98599 0.90403 1.22514 0.94602 1.00963 0.97074 1.22403 0.97172 0.96072 1.00578 1.22540 0.97812 0.97455 0.99148 1.21685 0.95008 0.98580 0.80581 0.88648 1.46074 1.68967 1.08136 1.13253 1.17986 0.76933 0.82917 0.86916 1.90783 1.52527 1.43346 1.55653 1.21883 1.06429 0.97145 0.94015 1.24031 0.92531 0.97580 0.95583 1.21482 1.01751 0.97451 0.93727 1.22458 1.00164 0.94569 0.98830 1.21305 1.00886 0.96930 0.93886 0.93087 0.80705 0.95208 0.95645 0.91189 0.90631 0.91678 0.91921 0.91203 0.91706 0.76556 0.84498 0.90326 0.89602 0.90860 0.90498 0.89906 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.64 13.97 55.49 0.78 -28.87 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.07 27.74 -169.99 -4.71 17.35 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 7 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.75 -17.92 5.27 -59.91 -0.32 -18.23 16 10 C 0.17 3.23 5.54 -4.04 -0.02 3.21 16 11 C -0.11 -1.59 2.60 -88.96 -0.23 -1.82 16 12 H 0.08 1.12 7.74 -51.93 -0.40 0.72 16 13 C -0.11 -1.58 6.11 -24.66 -0.15 -1.73 16 14 C -0.12 -1.40 6.83 -25.00 -0.17 -1.57 16 15 C -0.13 -1.57 6.60 -25.61 -0.17 -1.74 16 16 C 0.15 2.01 2.82 -66.81 -0.19 1.82 16 17 H 0.10 1.51 7.26 -51.93 -0.38 1.14 16 18 N -0.71 -8.93 4.98 -53.90 -0.27 -9.20 16 19 C 0.56 7.86 7.79 -12.66 -0.10 7.76 16 20 O -0.54 -9.52 16.42 5.27 0.09 -9.43 16 21 C -0.19 -2.10 6.09 -102.72 -0.63 -2.72 16 22 C -0.08 -0.76 10.43 -36.01 -0.38 -1.13 16 23 C -0.11 -0.74 6.80 -26.85 -0.18 -0.92 16 24 C -0.12 -0.80 7.17 -24.97 -0.18 -0.98 16 25 C -0.09 -0.76 6.04 -26.75 -0.16 -0.92 16 26 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 27 H 0.36 8.25 5.44 -40.82 -0.22 8.03 16 28 H 0.03 0.60 8.06 -51.93 -0.42 0.19 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.75 7.92 -51.93 -0.41 0.34 16 36 H 0.40 4.16 7.36 -40.82 -0.30 3.86 16 37 H 0.14 1.36 8.03 -52.49 -0.42 0.94 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.53 7.82 -51.93 -0.41 0.12 16 LS Contribution 345.30 15.07 5.20 5.20 Total: -1.00 -33.66 345.30 -9.23 -42.89 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.19 Total: 8.15 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -2.81 Total: -7.87 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.19 Total: -56.30 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.66 -9.23 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732616038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.758 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds