Wall clock time and date at job start Mon Mar 30 2020 23:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08991 * 110.43572 * 305.70452 * 11 10 9 13 13 C 1.54893 * 110.48149 * 68.24452 * 11 10 9 14 14 C 1.55032 * 102.68285 * 156.51618 * 13 11 10 15 15 C 1.54259 * 104.28073 * 322.23386 * 14 13 11 16 16 C 1.53881 * 106.60226 * 23.51626 * 15 14 13 17 17 H 1.08997 * 110.03068 * 240.71537 * 16 15 14 18 18 N 1.46492 * 110.07397 * 119.30448 * 16 15 14 19 19 C 1.34786 * 119.99812 * 87.81080 * 18 16 15 20 20 O 1.21608 * 119.99834 * 0.02562 * 19 18 16 21 21 C 1.47107 * 119.99840 * 179.97438 * 19 18 16 22 22 C 1.32610 * 124.61438 * 180.02562 * 21 19 18 23 23 C 1.51113 * 110.75342 * 180.02562 * 22 21 19 24 24 C 1.54576 * 104.84179 * 16.59502 * 23 22 21 25 25 C 1.51113 * 124.62047 * 359.72390 * 21 19 18 26 26 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 29 29 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 30 30 H 1.09004 * 110.75410 * 274.93271 * 13 11 10 31 31 H 1.08997 * 110.76095 * 38.30574 * 13 11 10 32 32 H 1.08997 * 110.52582 * 203.48238 * 14 13 11 33 33 H 1.09007 * 110.36279 * 80.89877 * 14 13 11 34 34 H 1.09001 * 110.03567 * 264.23098 * 15 14 13 35 35 H 1.09001 * 110.07365 * 142.82303 * 15 14 13 36 36 H 0.96998 * 120.00598 * 267.81121 * 18 16 15 37 37 H 1.07991 * 124.62530 * 359.97438 * 22 21 19 38 38 H 1.09000 * 110.36497 * 135.43608 * 23 22 21 39 39 H 1.09000 * 110.36560 * 257.75454 * 23 22 21 40 40 H 1.09001 * 110.98317 * 93.07665 * 24 23 22 41 41 H 1.09000 * 110.98457 * 216.87141 * 24 23 22 42 42 H 1.08998 * 110.36830 * 282.24125 * 25 21 19 43 43 H 1.08999 * 110.36341 * 44.56597 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8816 -1.5360 -0.8283 13 6 6.0509 -1.5637 1.3487 14 6 7.5592 -1.9156 1.4175 15 6 7.6460 -3.3360 0.8220 16 6 6.4107 -3.5115 -0.0786 17 1 5.7991 -4.3379 0.2835 18 7 6.8274 -3.7638 -1.4602 19 6 7.0702 -5.0242 -1.8713 20 8 6.9430 -5.9520 -1.0955 21 6 7.4881 -5.2776 -3.2588 22 6 7.7497 -6.4773 -3.7596 23 6 8.1513 -6.3750 -5.2128 24 6 8.5073 -4.8854 -5.4213 25 6 7.6715 -4.2069 -4.3093 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3622 0.0007 28 1 3.8484 -3.0428 0.8907 29 1 3.8490 -3.0424 -0.8892 30 1 5.9042 -0.4837 1.3369 31 1 5.5109 -2.0189 2.1790 32 1 7.9055 -1.9133 2.4510 33 1 8.1400 -1.2145 0.8180 34 1 7.6339 -4.0773 1.6210 35 1 8.5563 -3.4390 0.2313 36 1 6.9285 -3.0238 -2.0791 37 1 7.6854 -7.4013 -3.2044 38 1 9.0191 -7.0039 -5.4117 39 1 7.3196 -6.6600 -5.8571 40 1 9.5737 -4.7145 -5.2735 41 1 8.1917 -4.5428 -6.4068 42 1 6.7046 -3.8876 -4.6983 43 1 8.2138 -3.3574 -3.8944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732616038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:45 Heat of formation + Delta-G solvation = -48.198687 kcal Electronic energy + Delta-G solvation = -21687.653346 eV Core-core repulsion = 18538.352136 eV Total energy + Delta-G solvation = -3149.301210 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29880 -39.63149 -38.40969 -36.48442 -34.72202 -33.57634 -30.71385 -30.48762 -29.46603 -28.25394 -26.32180 -23.92779 -23.22274 -21.79990 -21.59989 -20.93818 -20.00675 -19.26313 -18.08080 -17.63491 -16.63867 -16.52179 -16.24217 -16.02355 -15.62411 -15.23925 -15.04656 -14.74400 -14.48570 -13.89161 -13.77228 -13.60080 -13.46742 -13.10140 -12.87893 -12.76602 -12.59264 -12.41223 -12.19357 -12.05497 -12.00246 -11.99146 -11.85912 -11.71775 -11.60925 -11.44953 -11.02106 -10.95497 -10.18060 -9.82037 -9.33117 -8.04201 -5.39007 0.37625 1.37021 1.42635 1.49833 2.19270 2.27670 2.48078 3.26705 3.31107 3.53037 3.62317 3.65631 3.86203 3.89496 4.10840 4.22044 4.31634 4.32829 4.43377 4.49501 4.55609 4.57238 4.70512 4.78870 4.82606 4.89097 4.94756 4.97536 4.98316 5.07325 5.15768 5.18409 5.21353 5.27000 5.35421 5.38845 5.46310 5.54508 5.59837 5.72597 6.19116 6.54343 7.05877 7.20683 7.79749 8.02870 9.17627 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.004078 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.018310 B = 6865.277984 C = 7597.116328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.064 4.064 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.246 1.246 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.048 0.952 9 N -0.751 5.751 10 C 0.165 3.835 11 C -0.095 4.095 12 H 0.094 0.906 13 C -0.116 4.116 14 C -0.110 4.110 15 C -0.124 4.124 16 C 0.150 3.850 17 H 0.066 0.934 18 N -0.705 5.705 19 C 0.558 3.442 20 O -0.591 6.591 21 C -0.215 4.215 22 C -0.072 4.072 23 C -0.104 4.104 24 C -0.117 4.117 25 C -0.090 4.090 26 H 0.259 0.741 27 H 0.369 0.631 28 H 0.017 0.983 29 H 0.011 0.989 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.412 0.588 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.800 -6.582 -9.028 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.170 1.170 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.066 0.934 9 N -0.397 5.397 10 C 0.039 3.961 11 C -0.114 4.114 12 H 0.112 0.888 13 C -0.154 4.154 14 C -0.148 4.148 15 C -0.163 4.163 16 C 0.044 3.956 17 H 0.084 0.916 18 N -0.355 5.355 19 C 0.348 3.652 20 O -0.473 6.473 21 C -0.218 4.218 22 C -0.092 4.092 23 C -0.141 4.141 24 C -0.155 4.155 25 C -0.128 4.128 26 H 0.068 0.932 27 H 0.203 0.797 28 H 0.035 0.965 29 H 0.029 0.971 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.249 0.751 37 H 0.144 0.856 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 24.505 -7.313 -8.482 26.943 hybrid contribution -0.634 0.914 0.091 1.116 sum 23.871 -6.399 -8.392 26.100 Atomic orbital electron populations 1.69912 1.07373 1.26886 1.59399 1.25595 0.96190 1.01600 1.02184 0.85328 0.78773 0.78855 0.78352 1.20108 1.16981 1.22140 1.19014 0.82884 0.93367 1.41994 0.93402 1.42571 1.02266 1.03920 1.90920 1.20736 0.90603 0.87432 0.97378 1.22344 0.92802 0.96019 1.00218 0.88831 1.22524 0.96543 1.00785 0.95571 1.22341 0.95178 0.95408 1.01875 1.22472 0.96916 0.98202 0.98679 1.21524 0.95551 0.96806 0.81711 0.91574 1.45985 1.68211 1.08343 1.13008 1.18536 0.76176 0.82578 0.87937 1.90752 1.54777 1.44624 1.57183 1.21944 1.08010 0.98802 0.93063 1.24345 0.90740 0.96856 0.97270 1.21553 1.02728 0.98392 0.91417 1.22485 1.00410 0.93713 0.98855 1.21342 1.01357 0.96522 0.93538 0.93225 0.79682 0.96454 0.97050 0.90919 0.91954 0.90169 0.89992 0.91633 0.90791 0.75079 0.85552 0.88555 0.88632 0.89955 0.88941 0.90103 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.08 13.97 21.65 0.30 -63.77 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.96 44.89 27.74 68.60 1.90 46.80 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.25 -10.07 6.52 99.48 0.65 -9.42 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.24 -14.19 10.47 84.03 0.88 -13.31 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 N -0.75 -35.39 5.27 -343.45 -1.81 -37.20 16 10 C 0.16 6.54 5.54 86.38 0.48 7.02 16 11 C -0.09 -2.69 2.60 -9.72 -0.03 -2.72 16 12 H 0.09 2.42 7.74 -2.39 -0.02 2.40 16 13 C -0.12 -2.98 6.11 31.94 0.20 -2.78 16 14 C -0.11 -2.13 6.83 31.72 0.22 -1.92 16 15 C -0.12 -2.76 6.60 31.32 0.21 -2.55 16 16 C 0.15 4.03 2.82 45.72 0.13 4.16 16 17 H 0.07 2.19 7.26 -2.39 -0.02 2.17 16 18 N -0.71 -17.10 4.98 -442.69 -2.20 -19.30 16 19 C 0.56 15.62 7.79 86.57 0.67 16.29 16 20 O -0.59 -21.45 16.42 -4.06 -0.07 -21.51 16 21 C -0.22 -4.54 6.09 -18.56 -0.11 -4.65 16 22 C -0.07 -1.35 10.43 24.66 0.26 -1.09 16 23 C -0.10 -1.17 6.80 30.52 0.21 -0.97 16 24 C -0.12 -1.17 7.17 31.73 0.23 -0.94 16 25 C -0.09 -1.29 6.04 30.58 0.18 -1.10 16 26 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 27 H 0.37 16.06 5.44 -92.71 -0.50 15.55 16 28 H 0.02 0.73 8.06 -2.39 -0.02 0.72 16 29 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.06 1.76 8.00 -2.39 -0.02 1.74 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.54 7.92 -2.39 -0.02 1.52 16 36 H 0.41 7.84 7.36 -92.71 -0.68 7.15 16 37 H 0.13 2.55 8.03 -2.92 -0.02 2.53 16 38 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 0.99 7.82 -2.39 -0.02 0.97 16 Total: -1.00 -75.53 345.30 1.86 -73.67 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.25 Total: 29.26 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 3.99 Total: -7.93 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -3.71 Total: -120.28 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.07 Total: -21.51 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.80 kcal Total: -75.53 1.86 -73.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732616038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.471 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds