Wall clock time and date at job start Mon Mar 30 2020 23:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99973 * 2 1 4 4 H 1.48498 * 109.47553 * 270.00157 * 3 2 1 5 5 H 1.48501 * 109.47245 * 30.00758 * 3 2 1 6 6 H 1.48506 * 109.47035 * 150.00570 * 3 2 1 7 7 C 1.38814 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00300 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99360 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99531 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46662 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.05384 * 54.96744 * 11 10 9 13 13 C 1.53869 * 110.03587 * 293.54771 * 11 10 9 14 14 C 1.54270 * 106.63967 * 240.69205 * 13 11 10 15 15 C 1.54961 * 104.16191 * 336.44607 * 14 13 11 16 16 C 1.54268 * 110.02861 * 176.37799 * 11 10 9 17 17 H 1.09001 * 110.48482 * 24.22197 * 16 11 10 18 18 N 1.46496 * 110.49002 * 261.71077 * 16 11 10 19 19 C 1.34776 * 120.00288 * 155.00091 * 18 16 11 20 20 O 1.21615 * 119.99923 * 0.02562 * 19 18 16 21 21 C 1.47099 * 119.99940 * 179.97438 * 19 18 16 22 22 C 1.32615 * 124.61884 * 180.02562 * 21 19 18 23 23 C 1.51113 * 110.75881 * 180.02562 * 22 21 19 24 24 C 1.54578 * 104.83968 * 16.59922 * 23 22 21 25 25 C 1.51111 * 124.62212 * 359.72590 * 21 19 18 26 26 H 0.96995 * 119.99835 * 359.97438 * 1 2 3 27 27 H 0.96991 * 120.00341 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46826 * 60.00094 * 10 9 7 29 29 H 1.08996 * 109.47083 * 300.00318 * 10 9 7 30 30 H 1.09002 * 110.03268 * 0.02562 * 13 11 10 31 31 H 1.08995 * 110.03391 * 121.38598 * 13 11 10 32 32 H 1.08997 * 110.48585 * 95.09409 * 14 13 11 33 33 H 1.09002 * 110.48442 * 217.73292 * 14 13 11 34 34 H 1.09001 * 110.71970 * 279.57802 * 15 14 13 35 35 H 1.08998 * 110.76825 * 156.22170 * 15 14 13 36 36 H 0.97002 * 119.99986 * 334.99436 * 18 16 11 37 37 H 1.08002 * 124.62160 * 0.02562 * 22 21 19 38 38 H 1.09005 * 110.36691 * 135.43849 * 23 22 21 39 39 H 1.09004 * 110.36635 * 257.64601 * 23 22 21 40 40 H 1.08996 * 110.98326 * 93.07345 * 24 23 22 41 41 H 1.09000 * 110.98321 * 216.83386 * 24 23 22 42 42 H 1.08994 * 110.36526 * 282.23925 * 25 21 19 43 43 H 1.08998 * 110.36499 * 44.56342 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3739 -4.7220 -0.8380 13 6 0.2828 -4.8447 1.3256 14 6 0.5903 -6.2007 1.9939 15 6 1.0075 -7.1178 0.8165 16 6 1.8198 -6.1613 -0.0914 17 1 2.8375 -6.0521 0.2834 18 7 1.8332 -6.6492 -1.4727 19 6 2.8105 -7.4810 -1.8842 20 8 3.6811 -7.8270 -1.1087 21 6 2.8236 -7.9713 -3.2710 22 6 3.7382 -8.7905 -3.7719 23 6 3.4504 -9.0906 -5.2248 24 6 2.4524 -7.9953 -5.6650 25 6 1.7931 -7.6151 -4.3173 26 1 -0.4849 0.8400 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 2.6847 -3.7145 0.8895 29 1 2.6848 -3.7145 -0.8905 30 1 0.6118 -4.0282 1.9683 31 1 -0.7861 -4.7584 1.1308 32 1 1.4091 -6.0981 2.7060 33 1 -0.2989 -6.5930 2.4876 34 1 0.1297 -7.4955 0.2921 35 1 1.6315 -7.9391 1.1687 36 1 1.1386 -6.3735 -2.0912 37 1 4.5748 -9.1890 -3.2172 38 1 4.3657 -9.0285 -5.8135 39 1 3.0012 -10.0785 -5.3263 40 1 2.9745 -7.1447 -6.1030 41 1 1.7136 -8.3965 -6.3588 42 1 0.8804 -8.1904 -4.1620 43 1 1.5784 -6.5468 -4.2901 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732616039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:48 Heat of formation + Delta-G solvation = -30.944909 kcal Electronic energy + Delta-G solvation = -21615.223673 eV Core-core repulsion = 18466.670643 eV Total energy + Delta-G solvation = -3148.553030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17403 -38.56955 -37.38848 -34.45235 -33.52916 -31.35904 -29.77126 -28.76638 -28.49220 -27.18904 -24.48586 -22.61134 -21.98130 -21.11603 -20.32484 -19.76465 -18.45839 -17.35399 -16.89028 -16.45883 -15.81247 -14.91641 -14.82675 -14.60658 -14.50466 -13.59593 -13.48008 -13.12043 -13.02723 -12.93918 -12.76111 -12.29372 -12.07511 -11.89960 -11.85809 -11.48359 -11.40322 -11.27306 -10.88538 -10.81611 -10.74368 -10.55669 -10.41869 -10.12172 -9.96372 -9.82557 -9.68215 -9.17687 -8.85443 -8.83701 -6.89894 -5.75143 -3.03298 1.27608 3.26541 3.31287 3.44793 3.50132 3.51820 4.27327 4.33222 4.57304 4.72358 4.75129 4.87098 4.88036 5.04728 5.12995 5.37136 5.40727 5.51106 5.53895 5.55196 5.58545 5.63619 5.67434 5.71672 5.76438 5.87078 5.90213 5.96166 6.09928 6.11592 6.24543 6.30732 6.34465 6.36231 6.54367 6.58105 6.68844 6.82891 6.95460 7.60510 7.72461 8.29397 8.44107 9.55425 10.13248 10.48665 11.47804 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.003978 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.522182 B = 7036.679818 C = 8122.170145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.102 4.102 12 H 0.075 0.925 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.132 4.132 16 C 0.145 3.855 17 H 0.097 0.903 18 N -0.712 5.712 19 C 0.565 3.435 20 O -0.546 6.546 21 C -0.190 4.190 22 C -0.079 4.079 23 C -0.107 4.107 24 C -0.123 4.123 25 C -0.093 4.093 26 H 0.254 0.746 27 H 0.384 0.616 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.137 0.863 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 -19.687 -7.661 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.093 0.907 13 C -0.153 4.153 14 C -0.160 4.160 15 C -0.170 4.170 16 C 0.040 3.960 17 H 0.115 0.885 18 N -0.362 5.362 19 C 0.353 3.647 20 O -0.425 6.425 21 C -0.193 4.193 22 C -0.099 4.099 23 C -0.144 4.144 24 C -0.161 4.161 25 C -0.130 4.130 26 H 0.064 0.936 27 H 0.218 0.782 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.155 0.845 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.882 -19.778 -7.093 21.095 hybrid contribution -0.199 1.152 -0.305 1.208 sum 1.684 -18.626 -7.398 20.112 Atomic orbital electron populations 1.69657 1.05080 1.25581 1.58006 1.24720 0.95516 0.97624 1.03127 0.86198 0.78694 0.83870 0.77504 1.21765 1.21778 1.20763 1.19247 0.91054 0.84214 1.42405 0.91263 1.42348 1.05825 0.99884 1.89467 1.20732 0.92941 0.85216 0.97844 1.22182 0.97703 0.93597 0.98678 0.90670 1.22127 0.99791 0.97377 0.95988 1.22331 1.00983 0.95486 0.97199 1.22859 0.99570 0.97929 0.96678 1.21943 1.00891 0.92784 0.80378 0.88537 1.45979 1.28672 1.48209 1.13320 1.17979 0.81340 0.78560 0.86859 1.90778 1.37728 1.58385 1.55633 1.21893 1.00130 1.03011 0.94309 1.24027 0.96517 0.93369 0.95952 1.21476 1.00020 0.99709 0.93155 1.22462 0.98237 0.98669 0.96699 1.21304 0.97205 1.02146 0.92392 0.93571 0.78249 0.96107 0.96526 0.90197 0.91879 0.91541 0.91763 0.91474 0.91513 0.76488 0.84535 0.90298 0.89786 0.90645 0.90570 0.90228 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.76 9.99 -15.05 -0.15 -6.91 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.57 5.34 -59.91 -0.32 -18.89 16 10 C 0.16 3.31 5.29 -4.04 -0.02 3.28 16 11 C -0.10 -1.64 2.71 -89.50 -0.24 -1.89 16 12 H 0.07 1.19 7.73 -51.93 -0.40 0.79 16 13 C -0.11 -1.76 6.13 -25.61 -0.16 -1.92 16 14 C -0.12 -1.56 6.84 -25.03 -0.17 -1.73 16 15 C -0.13 -1.68 6.58 -24.70 -0.16 -1.85 16 16 C 0.15 2.11 2.75 -66.27 -0.18 1.93 16 17 H 0.10 1.61 7.27 -51.93 -0.38 1.23 16 18 N -0.71 -9.40 5.16 -53.38 -0.28 -9.67 16 19 C 0.56 8.15 7.79 -12.67 -0.10 8.05 16 20 O -0.55 -9.79 16.41 5.26 0.09 -9.71 16 21 C -0.19 -2.16 6.09 -102.73 -0.63 -2.78 16 22 C -0.08 -0.79 10.43 -36.01 -0.38 -1.17 16 23 C -0.11 -0.76 6.80 -26.85 -0.18 -0.94 16 24 C -0.12 -0.88 7.17 -24.97 -0.18 -1.06 16 25 C -0.09 -0.80 6.04 -26.75 -0.16 -0.96 16 26 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.38 10.12 7.50 -40.82 -0.31 9.81 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.40 4.46 7.37 -40.82 -0.30 4.16 16 37 H 0.14 1.39 8.03 -52.49 -0.42 0.97 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.67 7.82 -51.93 -0.41 0.26 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -32.64 348.09 -9.59 -42.24 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.23 Total: 9.16 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.81 Total: -8.45 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.13 Total: -56.10 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.64 -9.59 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732616039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.292 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds