Wall clock time and date at job start Mon Mar 30 2020 23:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99973 * 2 1 4 4 H 1.48498 * 109.47553 * 270.00157 * 3 2 1 5 5 H 1.48501 * 109.47245 * 30.00758 * 3 2 1 6 6 H 1.48506 * 109.47035 * 150.00570 * 3 2 1 7 7 C 1.38814 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00300 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99360 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99531 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46662 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.05384 * 54.96744 * 11 10 9 13 13 C 1.53869 * 110.03587 * 293.54771 * 11 10 9 14 14 C 1.54270 * 106.63967 * 240.69205 * 13 11 10 15 15 C 1.54961 * 104.16191 * 336.44607 * 14 13 11 16 16 C 1.54268 * 110.02861 * 176.37799 * 11 10 9 17 17 H 1.09001 * 110.48482 * 24.22197 * 16 11 10 18 18 N 1.46496 * 110.49002 * 261.71077 * 16 11 10 19 19 C 1.34776 * 120.00288 * 155.00091 * 18 16 11 20 20 O 1.21615 * 119.99923 * 0.02562 * 19 18 16 21 21 C 1.47099 * 119.99940 * 179.97438 * 19 18 16 22 22 C 1.32615 * 124.61884 * 180.02562 * 21 19 18 23 23 C 1.51113 * 110.75881 * 180.02562 * 22 21 19 24 24 C 1.54578 * 104.83968 * 16.59922 * 23 22 21 25 25 C 1.51111 * 124.62212 * 359.72590 * 21 19 18 26 26 H 0.96995 * 119.99835 * 359.97438 * 1 2 3 27 27 H 0.96991 * 120.00341 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46826 * 60.00094 * 10 9 7 29 29 H 1.08996 * 109.47083 * 300.00318 * 10 9 7 30 30 H 1.09002 * 110.03268 * 0.02562 * 13 11 10 31 31 H 1.08995 * 110.03391 * 121.38598 * 13 11 10 32 32 H 1.08997 * 110.48585 * 95.09409 * 14 13 11 33 33 H 1.09002 * 110.48442 * 217.73292 * 14 13 11 34 34 H 1.09001 * 110.71970 * 279.57802 * 15 14 13 35 35 H 1.08998 * 110.76825 * 156.22170 * 15 14 13 36 36 H 0.97002 * 119.99986 * 334.99436 * 18 16 11 37 37 H 1.08002 * 124.62160 * 0.02562 * 22 21 19 38 38 H 1.09005 * 110.36691 * 135.43849 * 23 22 21 39 39 H 1.09004 * 110.36635 * 257.64601 * 23 22 21 40 40 H 1.08996 * 110.98326 * 93.07345 * 24 23 22 41 41 H 1.09000 * 110.98321 * 216.83386 * 24 23 22 42 42 H 1.08994 * 110.36526 * 282.23925 * 25 21 19 43 43 H 1.08998 * 110.36499 * 44.56342 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3739 -4.7220 -0.8380 13 6 0.2828 -4.8447 1.3256 14 6 0.5903 -6.2007 1.9939 15 6 1.0075 -7.1178 0.8165 16 6 1.8198 -6.1613 -0.0914 17 1 2.8375 -6.0521 0.2834 18 7 1.8332 -6.6492 -1.4727 19 6 2.8105 -7.4810 -1.8842 20 8 3.6811 -7.8270 -1.1087 21 6 2.8236 -7.9713 -3.2710 22 6 3.7382 -8.7905 -3.7719 23 6 3.4504 -9.0906 -5.2248 24 6 2.4524 -7.9953 -5.6650 25 6 1.7931 -7.6151 -4.3173 26 1 -0.4849 0.8400 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 2.6847 -3.7145 0.8895 29 1 2.6848 -3.7145 -0.8905 30 1 0.6118 -4.0282 1.9683 31 1 -0.7861 -4.7584 1.1308 32 1 1.4091 -6.0981 2.7060 33 1 -0.2989 -6.5930 2.4876 34 1 0.1297 -7.4955 0.2921 35 1 1.6315 -7.9391 1.1687 36 1 1.1386 -6.3735 -2.0912 37 1 4.5748 -9.1890 -3.2172 38 1 4.3657 -9.0285 -5.8135 39 1 3.0012 -10.0785 -5.3263 40 1 2.9745 -7.1447 -6.1030 41 1 1.7136 -8.3965 -6.3588 42 1 0.8804 -8.1904 -4.1620 43 1 1.5784 -6.5468 -4.2901 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732616039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:47 Heat of formation + Delta-G solvation = -51.430252 kcal Electronic energy + Delta-G solvation = -21616.111984 eV Core-core repulsion = 18466.670643 eV Total energy + Delta-G solvation = -3149.441341 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26222 -39.62719 -38.40715 -36.31814 -34.76774 -33.29859 -30.59584 -30.16616 -29.45700 -28.23246 -26.32566 -24.18869 -23.21290 -21.88296 -21.41518 -20.97885 -19.68693 -19.03699 -18.04685 -17.64608 -16.63727 -16.52666 -16.13816 -15.98499 -15.65615 -15.18760 -14.98935 -14.87159 -14.21086 -13.88213 -13.59875 -13.52243 -13.17431 -13.14591 -12.90704 -12.81330 -12.59058 -12.39443 -12.14887 -12.05925 -11.99469 -11.96703 -11.89532 -11.76105 -11.65713 -11.31701 -11.00065 -10.94352 -10.15030 -9.80680 -9.02332 -7.97181 -5.25984 0.38280 1.46049 1.47376 1.56124 2.19833 2.27477 2.54218 3.35797 3.43009 3.55705 3.65909 3.66895 3.86421 4.08180 4.19188 4.22257 4.31815 4.38212 4.46034 4.48571 4.51025 4.64756 4.71891 4.79634 4.82137 4.90947 4.95018 4.98164 5.00395 5.13310 5.15071 5.18456 5.25597 5.33635 5.35375 5.39296 5.44274 5.47466 5.55135 5.61307 6.25199 6.54819 7.20508 7.32222 8.05889 8.32608 9.25946 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.003978 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.522182 B = 7036.679818 C = 8122.170145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.251 4.251 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.090 4.090 12 H 0.081 0.919 13 C -0.112 4.112 14 C -0.113 4.113 15 C -0.120 4.120 16 C 0.150 3.850 17 H 0.071 0.929 18 N -0.705 5.705 19 C 0.559 3.441 20 O -0.591 6.591 21 C -0.216 4.216 22 C -0.071 4.071 23 C -0.102 4.102 24 C -0.120 4.120 25 C -0.090 4.090 26 H 0.253 0.747 27 H 0.377 0.623 28 H 0.013 0.987 29 H 0.007 0.993 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.411 0.589 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.714 -20.823 -8.892 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.801 3.199 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.036 3.964 11 C -0.110 4.110 12 H 0.100 0.900 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.159 4.159 16 C 0.044 3.956 17 H 0.089 0.911 18 N -0.355 5.355 19 C 0.349 3.651 20 O -0.473 6.473 21 C -0.219 4.219 22 C -0.091 4.091 23 C -0.139 4.139 24 C -0.158 4.158 25 C -0.127 4.127 26 H 0.062 0.938 27 H 0.210 0.790 28 H 0.031 0.969 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.248 0.752 37 H 0.146 0.854 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.457 -20.930 -8.342 22.578 hybrid contribution 0.005 1.463 0.076 1.465 sum 1.462 -19.467 -8.266 21.199 Atomic orbital electron populations 1.69797 1.06419 1.26170 1.59149 1.25513 0.96426 1.00862 1.03380 0.85171 0.77672 0.79570 0.77525 1.21240 1.21793 1.19833 1.19590 0.91316 0.85586 1.41806 0.91360 1.42470 1.05632 1.00729 1.89316 1.20799 0.93654 0.85230 0.96745 1.22034 0.96813 0.92475 0.99631 0.90033 1.22067 0.99977 0.97963 0.95043 1.22294 1.01973 0.93798 0.97050 1.22784 0.99735 0.97248 0.96136 1.21753 0.99614 0.92592 0.81635 0.91067 1.45900 1.28825 1.47743 1.12984 1.18527 0.80588 0.78065 0.87922 1.90746 1.39348 1.60116 1.57128 1.21929 1.02174 1.04495 0.93278 1.24352 0.95290 0.91781 0.97630 1.21542 1.00859 1.00618 0.90845 1.22497 0.98548 0.98610 0.96118 1.21338 0.97028 1.02101 0.92256 0.93842 0.79003 0.96943 0.97459 0.93090 0.90966 0.91797 0.89364 0.89695 0.91556 0.75157 0.85411 0.88929 0.87861 0.90935 0.88466 0.88906 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.88 13.06 21.65 0.28 -58.59 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 3 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -38.24 5.34 -343.44 -1.83 -40.08 16 10 C 0.16 6.87 5.29 86.38 0.46 7.33 16 11 C -0.09 -2.90 2.71 -10.07 -0.03 -2.93 16 12 H 0.08 2.54 7.73 -2.39 -0.02 2.52 16 13 C -0.11 -3.40 6.13 31.32 0.19 -3.21 16 14 C -0.11 -2.73 6.84 31.70 0.22 -2.52 16 15 C -0.12 -2.91 6.58 31.91 0.21 -2.70 16 16 C 0.15 4.34 2.75 46.07 0.13 4.47 16 17 H 0.07 2.46 7.27 -2.39 -0.02 2.44 16 18 N -0.70 -18.37 5.16 -441.04 -2.27 -20.65 16 19 C 0.56 16.21 7.79 86.57 0.67 16.89 16 20 O -0.59 -21.79 16.41 -4.08 -0.07 -21.86 16 21 C -0.22 -4.72 6.09 -18.57 -0.11 -4.83 16 22 C -0.07 -1.34 10.43 24.66 0.26 -1.08 16 23 C -0.10 -1.18 6.80 30.52 0.21 -0.97 16 24 C -0.12 -1.39 7.17 31.74 0.23 -1.16 16 25 C -0.09 -1.38 6.04 30.58 0.18 -1.19 16 26 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 27 H 0.38 20.29 7.50 -92.72 -0.70 19.59 16 28 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 1.84 7.58 -2.39 -0.02 1.83 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.41 8.81 7.37 -92.71 -0.68 8.12 16 37 H 0.13 2.59 8.03 -2.91 -0.02 2.57 16 38 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 41 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.15 7.82 -2.39 -0.02 1.13 16 Total: -1.00 -70.89 348.09 1.67 -69.22 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: -0.38 Total: 32.30 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 3.92 Total: -9.04 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -3.83 Total: -119.31 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.07 Total: -21.86 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -70.89 1.67 -69.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732616039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.789 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds