Wall clock time and date at job start Tue Mar 31 2020 00:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72395 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71953 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72203 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99939 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47145 * 179.97438 * 10 9 7 12 12 C 1.31000 * 119.99567 * 125.00386 * 11 10 9 13 13 C 1.50705 * 119.99812 * 180.02562 * 12 11 10 14 14 N 1.46503 * 109.47079 * 125.00048 * 13 12 11 15 15 C 1.34775 * 119.99724 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00156 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00040 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47135 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.36072 * 304.71840 * 18 17 15 20 20 C 1.50069 * 109.35943 * 64.30961 * 18 17 15 21 21 C 1.29446 * 124.07575 * 137.33756 * 20 18 17 22 22 C 1.50063 * 124.07656 * 359.53173 * 21 20 18 23 23 C 1.53026 * 110.14774 * 17.12819 * 22 21 20 24 24 C 1.53033 * 109.35767 * 184.99452 * 18 17 15 25 25 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 26 26 H 0.97000 * 120.00754 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46853 * 300.00510 * 10 9 7 28 28 H 1.09006 * 109.46689 * 59.99917 * 10 9 7 29 29 H 1.07995 * 120.00430 * 305.00349 * 11 10 9 30 30 H 1.08003 * 120.00215 * 359.97438 * 12 11 10 31 31 H 1.09006 * 109.46456 * 244.99687 * 13 12 11 32 32 H 1.08993 * 109.47107 * 4.99787 * 13 12 11 33 33 H 0.96992 * 120.00057 * 359.97438 * 14 13 12 34 34 H 1.09006 * 109.46799 * 299.99975 * 17 15 14 35 35 H 1.09000 * 109.47546 * 59.99927 * 17 15 14 36 36 H 1.07997 * 117.96341 * 317.31606 * 20 18 17 37 37 H 1.08005 * 117.96050 * 179.51058 * 21 20 18 38 38 H 1.09002 * 109.35775 * 256.92154 * 22 21 20 39 39 H 1.08999 * 109.36100 * 137.33866 * 22 21 20 40 40 H 1.08997 * 109.64157 * 190.87988 * 23 22 21 41 41 H 1.08999 * 109.81548 * 70.35737 * 23 22 21 42 42 H 1.08995 * 109.64075 * 310.04439 * 24 18 17 43 43 H 1.08998 * 109.63521 * 70.67197 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2852 2.7465 -0.0069 6 1 3.0988 1.6994 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 2.0580 -3.6567 0.0169 11 6 1.0787 -4.8021 0.0227 12 6 1.1474 -5.7272 -0.9023 13 6 0.1678 -6.8724 -0.8969 14 7 -0.5087 -6.9425 -2.1945 15 6 -1.4337 -7.8960 -2.4216 16 8 -1.7057 -8.6963 -1.5519 17 6 -2.1299 -7.9678 -3.7562 18 6 -3.1244 -9.1305 -3.7507 19 1 -2.6033 -10.0504 -3.4855 20 6 -4.1990 -8.8612 -2.7383 21 6 -5.4584 -9.0801 -2.9419 22 6 -6.0211 -9.6244 -4.2222 23 6 -4.9096 -10.2659 -5.0557 24 6 -3.7386 -9.2792 -5.1444 25 1 -0.4850 0.8400 -0.0041 26 1 0.3555 -2.3881 0.0113 27 1 2.6847 -3.7184 -0.8727 28 1 2.6847 -3.7104 0.9072 29 1 0.3203 -4.8604 0.7894 30 1 1.9056 -5.6688 -1.6692 31 1 0.7007 -7.8055 -0.7141 32 1 -0.5703 -6.7154 -0.1104 33 1 -0.2908 -6.3026 -2.8902 34 1 -2.6633 -7.0348 -3.9383 35 1 -1.3920 -8.1241 -4.5431 36 1 -3.9031 -8.4601 -1.7803 37 1 -6.1472 -8.8575 -2.1403 38 1 -6.4764 -8.8132 -4.7904 39 1 -6.7797 -10.3731 -3.9941 40 1 -5.2817 -10.4839 -6.0567 41 1 -4.5765 -11.1883 -4.5799 42 1 -4.1006 -8.3110 -5.4904 43 1 -2.9885 -9.6620 -5.8363 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732866776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:49 Heat of formation + Delta-G solvation = -15.889304 kcal Electronic energy + Delta-G solvation = -20366.351402 eV Core-core repulsion = 17218.451232 eV Total energy + Delta-G solvation = -3147.900170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12047 -38.40635 -36.27310 -34.69825 -33.04846 -32.66445 -31.18677 -30.61736 -28.17161 -26.51472 -24.13680 -22.66156 -22.33457 -21.77464 -20.51713 -19.37233 -18.14105 -17.17788 -17.01182 -16.36118 -15.89086 -15.55186 -14.79075 -14.45415 -14.27338 -14.22871 -13.62991 -13.52085 -13.27065 -13.08670 -12.89753 -12.73184 -12.48703 -12.31358 -12.03681 -11.88185 -11.64563 -11.12014 -11.05093 -10.82462 -10.77955 -10.64847 -10.33946 -10.12756 -9.87249 -9.79997 -9.22534 -9.10274 -8.99079 -8.72224 -6.97285 -5.79897 -3.09650 2.21380 2.28116 2.61636 3.37100 3.42144 3.46394 3.47688 4.43011 4.47070 4.56098 4.57540 4.75226 4.92208 4.96194 5.05953 5.19103 5.21768 5.25764 5.34235 5.42774 5.46431 5.51982 5.53048 5.62426 5.66380 5.69439 5.80185 5.83471 5.98670 6.08913 6.11590 6.13907 6.35521 6.45735 6.55325 6.61252 6.86572 6.88920 7.13059 7.48947 7.65657 8.19626 8.38368 9.49569 10.05794 10.41154 11.42761 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002418 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.423920 B =11576.315816 C =12181.952765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.107 4.107 12 C -0.202 4.202 13 C 0.155 3.845 14 N -0.726 5.726 15 C 0.510 3.490 16 O -0.543 6.543 17 C -0.135 4.135 18 C -0.042 4.042 19 H 0.087 0.913 20 C -0.135 4.135 21 C -0.171 4.171 22 C -0.090 4.090 23 C -0.120 4.120 24 C -0.117 4.117 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.403 0.597 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 -20.636 -10.914 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.032 3.968 14 N -0.377 5.377 15 C 0.297 3.703 16 O -0.420 6.420 17 C -0.175 4.175 18 C -0.061 4.061 19 H 0.105 0.895 20 C -0.153 4.153 21 C -0.189 4.189 22 C -0.127 4.127 23 C -0.157 4.157 24 C -0.154 4.154 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.238 0.762 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.607 -21.078 -10.261 24.647 hybrid contribution 0.303 1.381 -0.150 1.422 sum -7.305 -19.697 -10.411 23.446 Atomic orbital electron populations 1.69652 1.05152 1.25888 1.57426 1.24770 0.95563 0.97778 1.02830 0.86232 0.78504 0.83335 0.77891 1.21204 1.21626 1.21189 1.19200 0.91050 0.84027 1.43166 0.91113 1.42292 1.05939 0.99560 1.89610 1.19827 0.92618 0.84590 0.98426 1.23334 0.98259 0.94008 0.97031 1.22701 1.00990 0.97032 1.01387 1.20298 0.93839 0.97492 0.85157 1.46124 1.41269 1.33388 1.16947 1.20704 0.79241 0.80453 0.89920 1.90690 1.63919 1.40736 1.46682 1.21730 0.99132 1.01304 0.95353 1.19827 0.94287 0.97978 0.93983 0.89522 1.22198 0.93778 0.99613 0.99682 1.22021 0.96347 1.02231 0.98278 1.20432 0.97805 0.99844 0.94592 1.21585 0.95727 0.98611 0.99798 1.21682 0.97731 1.00036 0.95976 0.93376 0.78142 0.95676 0.95152 0.87303 0.86785 0.91217 0.91337 0.76245 0.88596 0.88645 0.87068 0.88188 0.91145 0.91446 0.91758 0.91745 0.91465 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.62 5.59 -61.08 -0.34 -18.96 16 10 C 0.17 3.45 6.70 -5.19 -0.03 3.41 16 11 C -0.11 -1.74 9.24 -36.03 -0.33 -2.07 16 12 C -0.20 -2.73 9.24 -36.02 -0.33 -3.06 16 13 C 0.15 1.96 6.11 -5.19 -0.03 1.93 16 14 N -0.73 -8.21 5.55 -61.47 -0.34 -8.56 16 15 C 0.51 6.11 7.46 -10.99 -0.08 6.02 16 16 O -0.54 -8.37 14.24 5.56 0.08 -8.29 16 17 C -0.14 -1.17 5.14 -27.89 -0.14 -1.31 16 18 C -0.04 -0.39 2.12 -92.06 -0.19 -0.59 16 19 H 0.09 0.90 7.96 -51.93 -0.41 0.49 16 20 C -0.13 -1.47 8.41 -35.90 -0.30 -1.78 16 21 C -0.17 -1.66 9.80 -35.90 -0.35 -2.02 16 22 C -0.09 -0.69 6.11 -28.18 -0.17 -0.87 16 23 C -0.12 -0.85 6.01 -26.52 -0.16 -1.01 16 24 C -0.12 -0.85 5.30 -26.51 -0.14 -0.99 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.39 10.34 7.66 -40.82 -0.31 10.03 16 27 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.11 1.75 7.84 -52.49 -0.41 1.34 16 30 H 0.11 1.45 7.84 -52.48 -0.41 1.04 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 33 H 0.40 3.81 8.46 -40.82 -0.35 3.46 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 1.46 6.47 -52.49 -0.34 1.12 16 37 H 0.10 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 42 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -32.25 353.83 -9.33 -41.59 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.24 Total: 8.93 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.52 Total: -9.79 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.04 Total: -55.06 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.25 -9.33 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732866776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.696 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds