Wall clock time and date at job start Tue Mar 31 2020 00:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72395 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71953 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72203 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99939 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47145 * 179.97438 * 10 9 7 12 12 C 1.31000 * 119.99567 * 125.00386 * 11 10 9 13 13 C 1.50705 * 119.99812 * 180.02562 * 12 11 10 14 14 N 1.46503 * 109.47079 * 125.00048 * 13 12 11 15 15 C 1.34775 * 119.99724 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00156 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00040 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47135 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.36072 * 304.71840 * 18 17 15 20 20 C 1.50069 * 109.35943 * 64.30961 * 18 17 15 21 21 C 1.29446 * 124.07575 * 137.33756 * 20 18 17 22 22 C 1.50063 * 124.07656 * 359.53173 * 21 20 18 23 23 C 1.53026 * 110.14774 * 17.12819 * 22 21 20 24 24 C 1.53033 * 109.35767 * 184.99452 * 18 17 15 25 25 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 26 26 H 0.97000 * 120.00754 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46853 * 300.00510 * 10 9 7 28 28 H 1.09006 * 109.46689 * 59.99917 * 10 9 7 29 29 H 1.07995 * 120.00430 * 305.00349 * 11 10 9 30 30 H 1.08003 * 120.00215 * 359.97438 * 12 11 10 31 31 H 1.09006 * 109.46456 * 244.99687 * 13 12 11 32 32 H 1.08993 * 109.47107 * 4.99787 * 13 12 11 33 33 H 0.96992 * 120.00057 * 359.97438 * 14 13 12 34 34 H 1.09006 * 109.46799 * 299.99975 * 17 15 14 35 35 H 1.09000 * 109.47546 * 59.99927 * 17 15 14 36 36 H 1.07997 * 117.96341 * 317.31606 * 20 18 17 37 37 H 1.08005 * 117.96050 * 179.51058 * 21 20 18 38 38 H 1.09002 * 109.35775 * 256.92154 * 22 21 20 39 39 H 1.08999 * 109.36100 * 137.33866 * 22 21 20 40 40 H 1.08997 * 109.64157 * 190.87988 * 23 22 21 41 41 H 1.08999 * 109.81548 * 70.35737 * 23 22 21 42 42 H 1.08995 * 109.64075 * 310.04439 * 24 18 17 43 43 H 1.08998 * 109.63521 * 70.67197 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2852 2.7465 -0.0069 6 1 3.0988 1.6994 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 2.0580 -3.6567 0.0169 11 6 1.0787 -4.8021 0.0227 12 6 1.1474 -5.7272 -0.9023 13 6 0.1678 -6.8724 -0.8969 14 7 -0.5087 -6.9425 -2.1945 15 6 -1.4337 -7.8960 -2.4216 16 8 -1.7057 -8.6963 -1.5519 17 6 -2.1299 -7.9678 -3.7562 18 6 -3.1244 -9.1305 -3.7507 19 1 -2.6033 -10.0504 -3.4855 20 6 -4.1990 -8.8612 -2.7383 21 6 -5.4584 -9.0801 -2.9419 22 6 -6.0211 -9.6244 -4.2222 23 6 -4.9096 -10.2659 -5.0557 24 6 -3.7386 -9.2792 -5.1444 25 1 -0.4850 0.8400 -0.0041 26 1 0.3555 -2.3881 0.0113 27 1 2.6847 -3.7184 -0.8727 28 1 2.6847 -3.7104 0.9072 29 1 0.3203 -4.8604 0.7894 30 1 1.9056 -5.6688 -1.6692 31 1 0.7007 -7.8055 -0.7141 32 1 -0.5703 -6.7154 -0.1104 33 1 -0.2908 -6.3026 -2.8902 34 1 -2.6633 -7.0348 -3.9383 35 1 -1.3920 -8.1241 -4.5431 36 1 -3.9031 -8.4601 -1.7803 37 1 -6.1472 -8.8575 -2.1403 38 1 -6.4764 -8.8132 -4.7904 39 1 -6.7797 -10.3731 -3.9941 40 1 -5.2817 -10.4839 -6.0567 41 1 -4.5765 -11.1883 -4.5799 42 1 -4.1006 -8.3110 -5.4904 43 1 -2.9885 -9.6620 -5.8363 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732866776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:49 Heat of formation + Delta-G solvation = -36.037218 kcal Electronic energy + Delta-G solvation = -20367.225081 eV Core-core repulsion = 17218.451232 eV Total energy + Delta-G solvation = -3148.773849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.00 seconds Orbital eigenvalues (eV) -41.02708 -39.16940 -37.65435 -36.20145 -34.41592 -33.61075 -32.37789 -31.86146 -29.28859 -27.70820 -25.75973 -23.81691 -23.17356 -22.85698 -21.51533 -20.61345 -19.12605 -18.83710 -17.99039 -17.26076 -16.77358 -16.70132 -16.47729 -15.67122 -15.35257 -15.18551 -15.06460 -14.80333 -14.66865 -14.05985 -13.77958 -13.53566 -13.49987 -13.30254 -13.18974 -12.98251 -12.88223 -12.70610 -12.35327 -12.24438 -11.99759 -11.79744 -11.71102 -11.42539 -11.10627 -11.01978 -10.76993 -10.29362 -9.95371 -9.86573 -9.02843 -7.96855 -5.27091 1.05621 1.42436 1.47796 1.51058 1.57363 1.68245 2.42976 2.56573 3.36768 3.70311 3.74395 3.81939 3.91555 4.04582 4.08414 4.22288 4.30391 4.40729 4.45607 4.51124 4.54978 4.67134 4.69959 4.73274 4.82179 4.86869 4.91316 4.92102 4.99451 5.08862 5.11596 5.23906 5.38497 5.44209 5.46381 5.51967 5.65062 5.81580 5.83089 6.09911 6.24959 6.58629 7.28052 7.30963 8.04954 8.29051 9.26485 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002418 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.423920 B =11576.315816 C =12181.952765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.079 0.921 9 N -0.745 5.745 10 C 0.174 3.826 11 C -0.134 4.134 12 C -0.160 4.160 13 C 0.157 3.843 14 N -0.720 5.720 15 C 0.506 3.494 16 O -0.582 6.582 17 C -0.128 4.128 18 C -0.040 4.040 19 H 0.071 0.929 20 C -0.154 4.154 21 C -0.168 4.168 22 C -0.090 4.090 23 C -0.121 4.121 24 C -0.112 4.112 25 H 0.252 0.748 26 H 0.374 0.626 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.415 0.585 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 -21.170 -13.048 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.097 0.903 9 N -0.388 5.388 10 C 0.048 3.952 11 C -0.154 4.154 12 C -0.179 4.179 13 C 0.034 3.966 14 N -0.373 5.373 15 C 0.295 3.705 16 O -0.462 6.462 17 C -0.167 4.167 18 C -0.059 4.059 19 H 0.089 0.911 20 C -0.172 4.172 21 C -0.186 4.186 22 C -0.127 4.127 23 C -0.158 4.158 24 C -0.149 4.149 25 H 0.061 0.939 26 H 0.205 0.795 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.123 0.877 30 H 0.150 0.850 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.251 0.749 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.924 -21.631 -12.412 25.883 hybrid contribution 0.095 1.416 0.536 1.517 sum -6.829 -20.215 -11.877 24.420 Atomic orbital electron populations 1.69817 1.06724 1.26310 1.59211 1.25641 0.96459 1.01329 1.03442 0.85156 0.77170 0.78769 0.78321 1.20050 1.22123 1.20363 1.19645 0.91645 0.85210 1.41720 0.90347 1.42534 1.05684 1.00958 1.89576 1.19909 0.93131 0.83655 0.98496 1.22999 0.98881 0.94413 0.99075 1.22793 1.00004 0.95382 0.99692 1.20181 0.93470 0.97286 0.85700 1.46055 1.41010 1.33591 1.16599 1.21348 0.78807 0.79633 0.90761 1.90679 1.65049 1.42298 1.48214 1.21776 0.99450 1.01614 0.93902 1.19817 0.93793 0.97462 0.94815 0.91066 1.22162 0.94897 1.00969 0.99216 1.22246 0.95966 1.01091 0.99276 1.20493 0.98263 1.00398 0.93561 1.21614 0.95452 0.98176 1.00555 1.21678 0.98114 1.00514 0.94632 0.93901 0.79451 0.94774 0.95264 0.87716 0.85042 0.90485 0.92781 0.74893 0.87455 0.85595 0.90139 0.88576 0.90095 0.90533 0.89871 0.92454 0.90860 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.62 13.06 21.65 0.28 -59.34 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.25 -14.04 9.99 84.04 0.84 -13.20 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -38.23 5.59 -347.16 -1.94 -40.17 16 10 C 0.17 6.86 6.70 85.63 0.57 7.44 16 11 C -0.13 -4.29 9.24 25.65 0.24 -4.06 16 12 C -0.16 -4.05 9.24 25.65 0.24 -3.81 16 13 C 0.16 3.81 6.11 85.63 0.52 4.34 16 14 N -0.72 -15.29 5.55 -466.78 -2.59 -17.88 16 15 C 0.51 11.76 7.46 87.66 0.65 12.41 16 16 O -0.58 -18.30 14.24 -3.04 -0.04 -18.34 16 17 C -0.13 -1.97 5.14 29.85 0.15 -1.82 16 18 C -0.04 -0.71 2.12 -11.73 -0.02 -0.73 16 19 H 0.07 1.46 7.96 -2.39 -0.02 1.44 16 20 C -0.15 -3.43 8.41 27.03 0.23 -3.20 16 21 C -0.17 -3.23 9.80 27.03 0.27 -2.97 16 22 C -0.09 -1.24 6.11 29.66 0.18 -1.06 16 23 C -0.12 -1.45 6.01 30.73 0.18 -1.27 16 24 C -0.11 -1.35 5.30 30.74 0.16 -1.19 16 25 H 0.25 15.01 8.31 -92.71 -0.77 14.23 16 26 H 0.37 20.49 7.66 -92.71 -0.71 19.78 16 27 H 0.03 1.30 7.79 -2.39 -0.02 1.28 16 28 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.10 3.43 7.84 -2.91 -0.02 3.40 16 30 H 0.13 2.94 7.84 -2.91 -0.02 2.92 16 31 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.05 1.50 7.79 -2.39 -0.02 1.48 16 33 H 0.41 6.90 8.46 -92.71 -0.78 6.11 16 34 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 2.26 6.47 -2.91 -0.02 2.24 16 37 H 0.10 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 42 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -70.21 353.83 1.91 -68.30 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.51 Total: 32.65 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 4.68 Total: -13.06 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -4.25 Total: -117.39 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.04 Total: -18.34 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -70.21 1.91 -68.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732866776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.268 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.01 seconds