Wall clock time and date at job start Tue Mar 31 2020 00:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99958 * 2 1 4 4 H 1.48504 * 109.47404 * 185.02040 * 3 2 1 5 5 H 1.48509 * 109.47074 * 305.01657 * 3 2 1 6 6 H 1.48497 * 109.47326 * 65.01754 * 3 2 1 7 7 C 1.38809 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99968 * 185.79162 * 7 2 1 9 9 N 1.36937 * 120.00175 * 5.78803 * 7 2 1 10 10 C 1.46498 * 119.99969 * 184.86242 * 9 7 2 11 11 C 1.52995 * 115.55426 * 294.87559 * 10 9 7 12 12 N 1.46501 * 109.47310 * 280.53255 * 11 10 9 13 13 C 1.34777 * 119.99758 * 184.87791 * 12 11 10 14 14 O 1.21277 * 120.00360 * 2.99917 * 13 12 11 15 15 C 1.50706 * 119.99474 * 183.00570 * 13 12 11 16 16 H 1.08995 * 109.35872 * 39.03935 * 15 13 12 17 17 C 1.52880 * 109.35371 * 279.45346 * 15 13 12 18 18 C 1.56472 * 106.95715 * 183.55058 * 17 15 13 19 19 C 1.52864 * 107.86788 * 75.81254 * 18 17 15 20 20 C 1.52075 * 110.51593 * 304.49968 * 19 18 17 21 21 H 1.09001 * 114.27026 * 166.23247 * 20 19 18 22 22 C 1.49177 * 119.09195 * 309.91899 * 20 19 18 23 23 C 1.52067 * 120.01824 * 21.69819 * 20 19 18 24 24 H 1.09000 * 117.25666 * 144.44568 * 23 20 19 25 25 C 1.53000 * 117.51829 * 80.57967 * 10 9 7 26 26 C 1.53008 * 117.49706 * 149.21054 * 10 9 7 27 27 H 0.96994 * 120.00022 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99885 * 4.86574 * 9 7 2 29 29 H 1.08997 * 109.47557 * 160.52748 * 11 10 9 30 30 H 1.09002 * 109.46863 * 40.52829 * 11 10 9 31 31 H 0.97002 * 120.00089 * 4.86562 * 12 11 10 32 32 H 1.08999 * 109.62052 * 305.00082 * 17 15 13 33 33 H 1.08999 * 109.61938 * 65.54834 * 17 15 13 34 34 H 1.09004 * 110.48122 * 316.01382 * 18 17 15 35 35 H 1.09003 * 109.46722 * 195.03065 * 18 17 15 36 36 H 1.09004 * 109.27267 * 184.23044 * 19 18 17 37 37 H 1.08997 * 109.27132 * 64.76254 * 19 18 17 38 38 H 1.09007 * 117.01276 * 2.53674 * 22 20 19 39 39 H 1.08995 * 117.72467 * 217.92096 * 22 20 19 40 40 H 1.08999 * 117.50004 * 214.96887 * 25 10 9 41 41 H 1.09000 * 117.49632 * 359.97438 * 25 10 9 42 42 H 1.09000 * 117.49505 * 359.97129 * 26 10 9 43 43 H 1.08992 * 117.49896 * 145.00051 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7056 1.3491 -0.1225 5 1 1.8019 2.4481 -1.1467 6 1 1.9856 2.3421 1.2690 7 6 2.0103 -1.2021 -0.0005 8 1 3.0862 -1.2045 0.0939 9 7 1.3309 -2.3850 -0.1207 10 6 2.0501 -3.6568 -0.0145 11 6 3.0719 -3.9314 -1.1195 12 7 2.3779 -4.4044 -2.3199 13 6 3.0865 -4.8042 -3.3944 14 8 4.2983 -4.8241 -3.3486 15 6 2.3729 -5.2265 -4.6529 16 1 1.5169 -4.5727 -4.8195 17 6 1.8845 -6.6670 -4.4993 18 6 1.2367 -7.0771 -5.8633 19 6 2.3667 -7.3493 -6.8561 20 6 3.2853 -6.1420 -6.9622 21 1 4.2329 -6.3426 -7.4622 22 6 2.6886 -4.7949 -7.1958 23 6 3.3303 -5.1192 -5.8378 24 1 4.2940 -4.6589 -5.6199 25 6 2.3728 -4.1713 1.3898 26 6 1.2871 -4.8544 0.5556 27 1 -0.4850 0.8400 0.0004 28 1 0.3735 -2.3807 -0.2761 29 1 3.7755 -4.6928 -0.7828 30 1 3.6128 -3.0137 -1.3504 31 1 1.4085 -4.4300 -2.3413 32 1 2.7235 -7.3121 -4.2384 33 1 1.1258 -6.7149 -3.7181 34 1 0.6030 -6.2748 -6.2411 35 1 0.6439 -7.9816 -5.7265 36 1 1.9406 -7.5643 -7.8361 37 1 2.9427 -8.2108 -6.5183 38 1 1.6010 -4.7357 -7.2379 39 1 3.2229 -4.1111 -7.8552 40 1 3.3131 -4.7054 1.5264 41 1 2.0503 -3.5632 2.2350 42 1 0.2503 -4.6957 0.8520 43 1 1.5133 -5.8377 0.1434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733247584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:05 Heat of formation + Delta-G solvation = 8.282481 kcal Electronic energy + Delta-G solvation = -21912.072874 eV Core-core repulsion = 18765.220872 eV Total energy + Delta-G solvation = -3146.852003 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.39923 -38.64593 -37.35611 -33.81868 -33.13916 -32.93462 -31.24876 -29.71551 -26.71071 -24.90045 -23.90474 -22.88885 -21.98761 -21.42722 -20.02235 -19.19544 -18.48397 -17.31314 -17.03614 -16.01681 -15.72126 -14.95035 -14.72362 -14.44028 -14.21485 -13.93394 -13.74842 -13.48044 -13.27102 -13.09270 -12.71234 -12.35842 -11.90844 -11.80154 -11.62428 -11.27309 -11.16848 -11.06700 -10.95346 -10.85585 -10.50812 -10.30413 -10.23022 -10.07956 -9.73204 -9.72091 -9.53233 -9.29064 -8.83800 -8.57462 -7.08498 -5.85144 -3.15281 2.93893 3.39927 3.46362 3.47576 3.49055 3.71592 4.39969 4.45213 4.55668 4.65743 4.69703 4.82126 5.02480 5.09365 5.17258 5.22538 5.27926 5.30308 5.31655 5.45119 5.46863 5.61274 5.63820 5.67908 5.77330 5.81756 5.87183 5.95003 5.97901 6.09374 6.11772 6.15647 6.25988 6.30757 6.43282 6.56484 6.65919 6.78066 6.88931 7.68995 7.91895 8.33113 8.57805 9.44142 9.97599 10.33111 11.36618 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.004240 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.329327 B = 6602.627582 C = 7299.233198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.689 5.689 10 C 0.127 3.873 11 C 0.148 3.852 12 N -0.710 5.710 13 C 0.515 3.485 14 O -0.550 6.550 15 C -0.075 4.075 16 H 0.094 0.906 17 C -0.107 4.107 18 C -0.120 4.120 19 C -0.091 4.091 20 C -0.137 4.137 21 H 0.097 0.903 22 C -0.182 4.182 23 C -0.132 4.132 24 H 0.118 0.882 25 C -0.187 4.187 26 C -0.185 4.185 27 H 0.255 0.745 28 H 0.387 0.613 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.400 0.600 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -15.234 -11.049 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.091 0.909 9 N -0.328 5.328 10 C 0.033 3.967 11 C 0.022 3.978 12 N -0.360 5.360 13 C 0.301 3.699 14 O -0.428 6.428 15 C -0.096 4.096 16 H 0.112 0.888 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.128 4.128 20 C -0.155 4.155 21 H 0.115 0.885 22 C -0.219 4.219 23 C -0.150 4.150 24 H 0.136 0.864 25 C -0.228 4.228 26 C -0.223 4.223 27 H 0.065 0.935 28 H 0.222 0.778 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.234 0.766 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.403 -15.035 -10.981 18.773 hybrid contribution -0.351 1.125 0.033 1.179 sum 2.052 -13.910 -10.948 17.820 Atomic orbital electron populations 1.69688 1.05128 1.25733 1.57283 1.24741 0.95486 0.97753 1.02565 0.86131 0.79006 0.83948 0.77197 1.20396 1.21775 1.21825 1.19214 0.91492 0.83653 1.42484 0.90931 1.41782 1.07424 0.98345 1.85280 1.20179 0.96666 0.87620 0.92215 1.21226 0.93921 0.98931 0.83721 1.45926 1.10455 1.65002 1.14595 1.20464 0.87844 0.76951 0.84645 1.90647 1.14154 1.54595 1.83427 1.20787 0.98172 0.98540 0.92127 0.88805 1.22089 1.00468 0.94322 0.97596 1.22168 0.97343 1.01542 0.94725 1.20886 0.96070 0.96553 0.99280 1.21319 1.00913 0.91256 1.02060 0.88496 1.22667 1.00612 0.98834 0.99803 1.22009 1.00772 1.04303 0.87931 0.86378 1.23357 0.98479 1.03812 0.97135 1.23064 0.97728 0.96018 1.05471 0.93486 0.77814 0.92191 0.90784 0.76566 0.90715 0.91275 0.91342 0.91459 0.91666 0.91521 0.88740 0.89000 0.89965 0.88605 0.89017 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.26 13.09 55.49 0.73 -26.53 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.22 29.56 -169.99 -5.02 17.19 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.39 9.56 -15.06 -0.14 -6.53 16 8 H 0.07 1.95 7.76 -52.48 -0.41 1.54 16 9 N -0.69 -16.35 5.49 -47.23 -0.26 -16.61 16 10 C 0.13 2.42 2.15 -131.82 -0.28 2.14 16 11 C 0.15 2.70 5.73 -4.04 -0.02 2.68 16 12 N -0.71 -11.35 5.52 -60.29 -0.33 -11.68 16 13 C 0.52 8.28 6.96 -10.98 -0.08 8.21 16 14 O -0.55 -10.78 15.60 5.56 0.09 -10.70 16 15 C -0.07 -0.92 2.39 -91.98 -0.22 -1.14 16 16 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 17 C -0.11 -1.08 5.34 -24.92 -0.13 -1.22 16 18 C -0.12 -1.00 5.81 -24.93 -0.14 -1.15 16 19 C -0.09 -0.76 5.92 -27.27 -0.16 -0.93 16 20 C -0.14 -1.37 5.91 -93.45 -0.55 -1.93 16 21 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 22 C -0.18 -1.86 9.48 -28.27 -0.27 -2.13 16 23 C -0.13 -1.63 5.51 -90.90 -0.50 -2.13 16 24 H 0.12 1.73 7.08 -51.93 -0.37 1.37 16 25 C -0.19 -3.26 10.10 -26.73 -0.27 -3.53 16 26 C -0.18 -2.93 10.15 -26.72 -0.27 -3.20 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.39 9.73 8.07 -40.82 -0.33 9.40 16 29 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 30 H 0.07 1.58 7.73 -51.93 -0.40 1.18 16 31 H 0.40 5.79 8.48 -40.82 -0.35 5.44 16 32 H 0.07 0.83 8.11 -51.93 -0.42 0.40 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.56 7.00 -51.93 -0.36 0.20 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.90 7.12 -51.92 -0.37 0.53 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 41 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -30.47 348.06 -9.90 -40.36 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -7.20 Total: 13.93 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.14 Total: -11.21 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.13 Total: -54.82 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.47 -9.90 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733247584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.647 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds