Wall clock time and date at job start Tue Mar 31 2020 00:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99958 * 2 1 4 4 H 1.48504 * 109.47404 * 185.02040 * 3 2 1 5 5 H 1.48509 * 109.47074 * 305.01657 * 3 2 1 6 6 H 1.48497 * 109.47326 * 65.01754 * 3 2 1 7 7 C 1.38809 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99968 * 185.79162 * 7 2 1 9 9 N 1.36937 * 120.00175 * 5.78803 * 7 2 1 10 10 C 1.46498 * 119.99969 * 184.86242 * 9 7 2 11 11 C 1.52995 * 115.55426 * 294.87559 * 10 9 7 12 12 N 1.46501 * 109.47310 * 280.53255 * 11 10 9 13 13 C 1.34777 * 119.99758 * 184.87791 * 12 11 10 14 14 O 1.21277 * 120.00360 * 2.99917 * 13 12 11 15 15 C 1.50706 * 119.99474 * 183.00570 * 13 12 11 16 16 H 1.08995 * 109.35872 * 39.03935 * 15 13 12 17 17 C 1.52880 * 109.35371 * 279.45346 * 15 13 12 18 18 C 1.56472 * 106.95715 * 183.55058 * 17 15 13 19 19 C 1.52864 * 107.86788 * 75.81254 * 18 17 15 20 20 C 1.52075 * 110.51593 * 304.49968 * 19 18 17 21 21 H 1.09001 * 114.27026 * 166.23247 * 20 19 18 22 22 C 1.49177 * 119.09195 * 309.91899 * 20 19 18 23 23 C 1.52067 * 120.01824 * 21.69819 * 20 19 18 24 24 H 1.09000 * 117.25666 * 144.44568 * 23 20 19 25 25 C 1.53000 * 117.51829 * 80.57967 * 10 9 7 26 26 C 1.53008 * 117.49706 * 149.21054 * 10 9 7 27 27 H 0.96994 * 120.00022 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99885 * 4.86574 * 9 7 2 29 29 H 1.08997 * 109.47557 * 160.52748 * 11 10 9 30 30 H 1.09002 * 109.46863 * 40.52829 * 11 10 9 31 31 H 0.97002 * 120.00089 * 4.86562 * 12 11 10 32 32 H 1.08999 * 109.62052 * 305.00082 * 17 15 13 33 33 H 1.08999 * 109.61938 * 65.54834 * 17 15 13 34 34 H 1.09004 * 110.48122 * 316.01382 * 18 17 15 35 35 H 1.09003 * 109.46722 * 195.03065 * 18 17 15 36 36 H 1.09004 * 109.27267 * 184.23044 * 19 18 17 37 37 H 1.08997 * 109.27132 * 64.76254 * 19 18 17 38 38 H 1.09007 * 117.01276 * 2.53674 * 22 20 19 39 39 H 1.08995 * 117.72467 * 217.92096 * 22 20 19 40 40 H 1.08999 * 117.50004 * 214.96887 * 25 10 9 41 41 H 1.09000 * 117.49632 * 359.97438 * 25 10 9 42 42 H 1.09000 * 117.49505 * 359.97129 * 26 10 9 43 43 H 1.08992 * 117.49896 * 145.00051 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7056 1.3491 -0.1225 5 1 1.8019 2.4481 -1.1467 6 1 1.9856 2.3421 1.2690 7 6 2.0103 -1.2021 -0.0005 8 1 3.0862 -1.2045 0.0939 9 7 1.3309 -2.3850 -0.1207 10 6 2.0501 -3.6568 -0.0145 11 6 3.0719 -3.9314 -1.1195 12 7 2.3779 -4.4044 -2.3199 13 6 3.0865 -4.8042 -3.3944 14 8 4.2983 -4.8241 -3.3486 15 6 2.3729 -5.2265 -4.6529 16 1 1.5169 -4.5727 -4.8195 17 6 1.8845 -6.6670 -4.4993 18 6 1.2367 -7.0771 -5.8633 19 6 2.3667 -7.3493 -6.8561 20 6 3.2853 -6.1420 -6.9622 21 1 4.2329 -6.3426 -7.4622 22 6 2.6886 -4.7949 -7.1958 23 6 3.3303 -5.1192 -5.8378 24 1 4.2940 -4.6589 -5.6199 25 6 2.3728 -4.1713 1.3898 26 6 1.2871 -4.8544 0.5556 27 1 -0.4850 0.8400 0.0004 28 1 0.3735 -2.3807 -0.2761 29 1 3.7755 -4.6928 -0.7828 30 1 3.6128 -3.0137 -1.3504 31 1 1.4085 -4.4300 -2.3413 32 1 2.7235 -7.3121 -4.2384 33 1 1.1258 -6.7149 -3.7181 34 1 0.6030 -6.2748 -6.2411 35 1 0.6439 -7.9816 -5.7265 36 1 1.9406 -7.5643 -7.8361 37 1 2.9427 -8.2108 -6.5183 38 1 1.6010 -4.7357 -7.2379 39 1 3.2229 -4.1111 -7.8552 40 1 3.3131 -4.7054 1.5264 41 1 2.0503 -3.5632 2.2350 42 1 0.2503 -4.6957 0.8520 43 1 1.5133 -5.8377 0.1434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733247584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:04 Heat of formation + Delta-G solvation = -10.455680 kcal Electronic energy + Delta-G solvation = -21912.885422 eV Core-core repulsion = 18765.220872 eV Total energy + Delta-G solvation = -3147.664550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46166 -39.83749 -38.80076 -35.32429 -34.85618 -33.88766 -32.13292 -31.66281 -28.03763 -26.00543 -25.75123 -23.65885 -23.32504 -22.45903 -21.24795 -20.65527 -19.33797 -19.14748 -18.41031 -17.24395 -17.14762 -16.33804 -16.07806 -15.83669 -15.35726 -15.19626 -14.97993 -14.73851 -14.60038 -14.25946 -13.70876 -13.62207 -13.51352 -13.02924 -12.85038 -12.79088 -12.45354 -12.29364 -12.18925 -12.05441 -12.01131 -11.92856 -11.60361 -11.31407 -11.00246 -10.99613 -10.81481 -10.58954 -10.42827 -9.98994 -9.04638 -7.97869 -5.26089 1.43926 1.45808 1.54684 1.66329 2.20112 2.51476 2.87356 3.07940 3.36481 3.60661 3.64947 3.66903 3.83688 3.92210 3.96326 4.18084 4.23754 4.27491 4.30967 4.32386 4.42535 4.51619 4.61479 4.78558 4.81401 4.86156 4.91278 4.93379 5.02711 5.04825 5.16800 5.18281 5.19067 5.26146 5.33732 5.37849 5.40906 5.47161 5.53028 5.54104 6.25565 6.63885 7.29186 7.31624 8.04511 8.28852 9.24430 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.004240 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.329327 B = 6602.627582 C = 7299.233198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.231 4.231 8 H 0.067 0.933 9 N -0.697 5.697 10 C 0.100 3.900 11 C 0.160 3.840 12 N -0.705 5.705 13 C 0.511 3.489 14 O -0.590 6.590 15 C -0.065 4.065 16 H 0.103 0.897 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.091 4.091 20 C -0.126 4.126 21 H 0.098 0.902 22 C -0.172 4.172 23 C -0.161 4.161 24 H 0.085 0.915 25 C -0.187 4.187 26 C -0.150 4.150 27 H 0.251 0.749 28 H 0.378 0.622 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.410 0.590 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.751 -17.183 -11.958 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.363 4.363 8 H 0.085 0.915 9 N -0.336 5.336 10 C 0.008 3.992 11 C 0.034 3.966 12 N -0.354 5.354 13 C 0.299 3.701 14 O -0.471 6.471 15 C -0.086 4.086 16 H 0.121 0.879 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.128 4.128 20 C -0.144 4.144 21 H 0.117 0.883 22 C -0.209 4.209 23 C -0.180 4.180 24 H 0.103 0.897 25 C -0.227 4.227 26 C -0.187 4.187 27 H 0.060 0.940 28 H 0.211 0.789 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.245 0.755 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.733 -17.023 -11.888 20.836 hybrid contribution -0.061 1.668 0.318 1.699 sum 1.672 -15.356 -11.570 19.299 Atomic orbital electron populations 1.69804 1.06227 1.25923 1.59330 1.25386 0.96238 1.00483 1.03730 0.85246 0.78159 0.80632 0.76770 1.19796 1.22080 1.21841 1.19430 0.91398 0.85053 1.40399 0.91471 1.41797 1.07060 0.99296 1.85431 1.20346 0.98302 0.87297 0.93288 1.20920 0.93757 0.97547 0.84389 1.45880 1.10848 1.64600 1.14090 1.21210 0.87508 0.75848 0.85505 1.90624 1.16099 1.56252 1.84161 1.20798 0.97809 1.00237 0.89802 0.87879 1.22115 1.00442 0.92223 0.99445 1.22171 0.97296 1.02566 0.93212 1.20946 0.95866 0.95600 1.00397 1.21438 1.01463 0.91781 0.99746 0.88337 1.22739 1.01289 0.99101 0.97770 1.21888 0.99867 1.07047 0.89163 0.89659 1.23362 1.00332 1.03770 0.95225 1.23130 0.97229 0.95776 1.02609 0.93993 0.78871 0.91217 0.94600 0.75482 0.91810 0.90071 0.90822 0.89526 0.89825 0.91205 0.87455 0.88741 0.87698 0.90427 0.88902 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.20 13.09 21.65 0.28 -56.92 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 3 Si 0.96 46.31 29.56 68.60 2.03 48.34 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.23 -12.58 9.56 84.03 0.80 -11.78 16 8 H 0.07 3.67 7.76 -2.91 -0.02 3.64 16 9 N -0.70 -33.28 5.49 -303.34 -1.66 -34.95 16 10 C 0.10 3.72 2.15 3.60 0.01 3.73 16 11 C 0.16 5.84 5.73 86.38 0.49 6.34 16 12 N -0.70 -22.12 5.52 -463.06 -2.56 -24.68 16 13 C 0.51 16.45 6.96 87.66 0.61 17.06 16 14 O -0.59 -23.79 15.60 -3.02 -0.05 -23.83 16 15 C -0.07 -1.55 2.39 -11.67 -0.03 -1.58 16 16 H 0.10 2.23 8.06 -2.39 -0.02 2.21 16 17 C -0.10 -1.88 5.34 31.76 0.17 -1.71 16 18 C -0.12 -1.54 5.81 31.76 0.18 -1.35 16 19 C -0.09 -1.26 5.92 30.24 0.18 -1.08 16 20 C -0.13 -2.32 5.91 -12.62 -0.07 -2.39 16 21 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 22 C -0.17 -3.24 9.48 29.60 0.28 -2.96 16 23 C -0.16 -3.93 5.51 -10.98 -0.06 -3.99 16 24 H 0.09 2.65 7.08 -2.39 -0.02 2.63 16 25 C -0.19 -6.21 10.10 30.60 0.31 -5.90 16 26 C -0.15 -4.36 10.15 30.60 0.31 -4.05 16 27 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 28 H 0.38 19.16 8.07 -92.71 -0.75 18.41 16 29 H 0.07 2.40 7.93 -2.39 -0.02 2.38 16 30 H 0.04 1.57 7.73 -2.39 -0.02 1.55 16 31 H 0.41 11.33 8.48 -92.71 -0.79 10.54 16 32 H 0.06 1.30 8.11 -2.39 -0.02 1.29 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.07 0.94 7.00 -2.38 -0.02 0.92 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 1.75 7.12 -2.38 -0.02 1.73 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 3.00 8.09 -2.39 -0.02 2.99 16 41 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.12 2.74 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -67.05 348.06 1.17 -65.89 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.53 Total: 39.05 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 3.65 Total: -12.90 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -3.94 Total: -116.55 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.83 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -67.05 1.17 -65.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733247584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.430 kcal (2) G-P(sol) polarization free energy of solvation -67.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds