Wall clock time and date at job start Tue Mar 31 2020 00:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99953 * 2 1 4 4 H 1.48497 * 109.47367 * 270.00493 * 3 2 1 5 5 H 1.48502 * 109.46854 * 30.00402 * 3 2 1 6 6 H 1.48499 * 109.47057 * 149.99976 * 3 2 1 7 7 C 1.38812 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99757 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99953 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99886 * 185.38741 * 9 7 2 11 11 C 1.52996 * 115.55161 * 294.73138 * 10 9 7 12 12 N 1.46504 * 109.47063 * 275.47633 * 11 10 9 13 13 C 1.34776 * 119.99924 * 181.48142 * 12 11 10 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99600 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.26869 * 59.50877 * 15 13 12 17 17 C 1.52867 * 109.26876 * 299.99591 * 15 13 12 18 18 C 1.53303 * 108.58777 * 184.87858 * 17 15 13 19 19 C 1.52875 * 108.57937 * 74.44974 * 18 17 15 20 20 C 1.52704 * 110.15252 * 305.47364 * 19 18 17 21 21 H 1.09003 * 115.39368 * 231.21781 * 20 19 18 22 22 C 1.53655 * 116.03113 * 90.20525 * 20 19 18 23 23 C 1.52075 * 120.52369 * 21.47144 * 20 19 18 24 24 H 1.08996 * 115.31555 * 211.01086 * 23 20 19 25 25 C 1.53008 * 117.49602 * 80.39994 * 10 9 7 26 26 C 1.52996 * 117.49692 * 149.05768 * 10 9 7 27 27 H 0.97002 * 120.00015 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00258 * 5.39240 * 9 7 2 29 29 H 1.08997 * 109.46993 * 155.47647 * 11 10 9 30 30 H 1.09001 * 109.47540 * 35.47877 * 11 10 9 31 31 H 0.97002 * 119.99598 * 1.47959 * 12 11 10 32 32 H 1.09001 * 109.61428 * 65.15389 * 17 15 13 33 33 H 1.08992 * 109.62419 * 304.61108 * 17 15 13 34 34 H 1.08998 * 109.62286 * 314.71869 * 18 17 15 35 35 H 1.09006 * 109.61513 * 194.17456 * 18 17 15 36 36 H 1.09002 * 109.36156 * 65.68314 * 19 18 17 37 37 H 1.08999 * 109.35735 * 185.26518 * 19 18 17 38 38 H 1.08998 * 117.53744 * 140.94129 * 22 20 19 39 39 H 1.08994 * 117.53770 * 355.68889 * 22 20 19 40 40 H 1.08999 * 117.49341 * 215.00213 * 25 10 9 41 41 H 1.08998 * 117.49509 * 0.02562 * 25 10 9 42 42 H 1.09004 * 117.49902 * 359.97438 * 26 10 9 43 43 H 1.08999 * 117.50041 * 144.97691 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4652 -0.1208 11 6 3.9425 -3.4396 1.0465 12 7 4.8900 -3.0973 2.1101 13 6 4.9423 -3.8428 3.2317 14 8 4.2053 -4.7973 3.3603 15 6 5.9174 -3.4909 4.3255 16 1 5.7119 -2.4806 4.6793 17 6 7.3407 -3.5515 3.7711 18 6 8.3242 -3.3119 4.9224 19 6 8.3785 -4.5717 5.7868 20 6 6.9730 -4.9589 6.2412 21 1 6.8577 -5.1273 7.3119 22 6 6.2045 -5.9147 5.3156 23 6 5.7522 -4.4693 5.4779 24 1 4.8569 -4.3152 6.0801 25 6 4.2688 -3.0610 -1.5213 26 6 5.4731 -2.4291 -0.8188 27 1 -0.4850 0.8401 0.0004 28 1 3.8647 -0.3658 0.0779 29 1 4.1343 -4.4558 0.7022 30 1 2.9248 -3.3723 1.4310 31 1 5.4798 -2.3340 2.0070 32 1 7.4710 -2.7801 3.0121 33 1 7.5217 -4.5333 3.3336 34 1 7.9846 -2.4692 5.5246 35 1 9.3150 -3.1015 4.5195 36 1 8.8090 -5.3888 5.2080 37 1 9.0018 -4.3834 6.6610 38 1 5.5960 -6.6886 5.7834 39 1 6.6768 -6.1921 4.3733 40 1 4.2510 -4.1471 -1.6110 41 1 3.8272 -2.5129 -2.3536 42 1 5.8233 -1.4657 -1.1894 43 1 6.2478 -3.0993 -0.4462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733247586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:08 Heat of formation + Delta-G solvation = 14.297920 kcal Electronic energy + Delta-G solvation = -22058.949209 eV Core-core repulsion = 18912.358055 eV Total energy + Delta-G solvation = -3146.591154 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47223 -38.57726 -37.41739 -34.00038 -33.15639 -32.89882 -31.29054 -30.37222 -26.76683 -25.07626 -23.60729 -22.75391 -22.11399 -21.59589 -20.04508 -19.26227 -18.42024 -17.68372 -16.94354 -16.40428 -15.73392 -15.15649 -14.90671 -14.31794 -14.19648 -13.94721 -13.78087 -13.55289 -13.42269 -12.78949 -12.74705 -12.42306 -12.34009 -11.97712 -11.51649 -11.28913 -11.24996 -11.08386 -11.01934 -10.99123 -10.53406 -10.46071 -10.19917 -10.15938 -9.83356 -9.65446 -9.56020 -9.30887 -8.87881 -8.61511 -7.38007 -5.82868 -3.21297 2.94937 3.29768 3.30903 3.33718 3.39903 3.82761 4.35774 4.40125 4.51739 4.57245 4.62875 4.82129 4.95828 4.97780 5.04898 5.06895 5.15455 5.26129 5.33826 5.37253 5.46605 5.49065 5.52127 5.71579 5.72704 5.78663 5.85793 5.93620 5.95453 5.98162 6.07046 6.15338 6.17541 6.22763 6.30773 6.37587 6.62342 6.67975 6.83448 7.86483 7.93834 8.35712 8.56451 9.12500 9.83866 10.01920 11.34888 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.004173 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.739401 B = 6708.736930 C = 6856.449869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.093 0.907 9 N -0.715 5.715 10 C 0.133 3.867 11 C 0.147 3.853 12 N -0.716 5.716 13 C 0.513 3.487 14 O -0.539 6.539 15 C -0.075 4.075 16 H 0.099 0.901 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.089 4.089 20 C -0.155 4.155 21 H 0.101 0.899 22 C -0.162 4.162 23 C -0.114 4.114 24 H 0.101 0.899 25 C -0.180 4.180 26 C -0.189 4.189 27 H 0.261 0.739 28 H 0.365 0.635 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.397 0.603 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.275 -7.258 8.713 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.110 0.890 9 N -0.356 5.356 10 C 0.040 3.960 11 C 0.022 3.978 12 N -0.366 5.366 13 C 0.298 3.702 14 O -0.416 6.416 15 C -0.097 4.097 16 H 0.117 0.883 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.126 4.126 20 C -0.173 4.173 21 H 0.119 0.881 22 C -0.199 4.199 23 C -0.133 4.133 24 H 0.119 0.881 25 C -0.221 4.221 26 C -0.227 4.227 27 H 0.071 0.929 28 H 0.199 0.801 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.231 0.769 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.434 -7.981 8.788 21.926 hybrid contribution 0.610 1.689 -0.087 1.798 sum 19.044 -6.292 8.701 21.862 Atomic orbital electron populations 1.69699 1.05089 1.25906 1.56895 1.24672 0.95198 0.97119 1.01725 0.86561 0.79060 0.85121 0.77752 1.21053 1.21677 1.20505 1.18992 0.80054 0.94850 1.43461 0.88951 1.42144 1.03821 1.01151 1.88487 1.20075 0.94519 0.90156 0.91264 1.21232 0.93899 0.96231 0.86444 1.45978 1.40455 1.32049 1.18140 1.20490 0.84000 0.82883 0.82804 1.90682 1.42835 1.28606 1.79500 1.20640 0.94860 1.00614 0.93555 0.88268 1.21605 0.92701 1.02690 0.98069 1.21572 0.99035 0.98144 0.96733 1.21043 0.94479 0.97687 0.99428 1.22325 0.92440 1.05070 0.97477 0.88107 1.22963 1.03301 0.92849 1.00758 1.21341 0.97623 0.95898 0.98393 0.88103 1.23362 1.01139 0.99465 0.98132 1.23126 0.91399 1.02509 1.05683 0.92930 0.80095 0.92119 0.90072 0.76936 0.91051 0.91279 0.91354 0.91544 0.91736 0.91667 0.89074 0.89049 0.89568 0.88408 0.89161 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.82 13.97 55.49 0.78 -28.05 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.51 27.79 -169.99 -4.72 16.79 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.28 6.45 56.52 0.36 -5.92 16 7 C -0.24 -6.68 10.01 -15.06 -0.15 -6.84 16 8 H 0.09 2.76 8.02 -52.49 -0.42 2.34 16 9 N -0.71 -16.06 5.29 -47.23 -0.25 -16.31 16 10 C 0.13 2.43 2.19 -131.82 -0.29 2.14 16 11 C 0.15 2.64 5.77 -4.04 -0.02 2.62 16 12 N -0.72 -10.89 5.37 -60.30 -0.32 -11.22 16 13 C 0.51 7.98 7.10 -10.99 -0.08 7.90 16 14 O -0.54 -10.45 15.65 5.56 0.09 -10.36 16 15 C -0.08 -0.88 2.58 -92.31 -0.24 -1.12 16 16 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 17 C -0.11 -1.05 4.82 -26.64 -0.13 -1.18 16 18 C -0.12 -0.91 5.93 -26.64 -0.16 -1.07 16 19 C -0.09 -0.70 5.83 -26.95 -0.16 -0.86 16 20 C -0.15 -1.46 6.19 -90.90 -0.56 -2.02 16 21 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.16 -1.83 9.16 -26.74 -0.24 -2.07 16 23 C -0.11 -1.34 4.69 -91.91 -0.43 -1.77 16 24 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 25 C -0.18 -2.99 10.11 -26.69 -0.27 -3.26 16 26 C -0.19 -2.75 9.95 -26.69 -0.27 -3.01 16 27 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 28 H 0.36 8.02 5.87 -40.82 -0.24 7.78 16 29 H 0.06 1.04 7.91 -51.93 -0.41 0.63 16 30 H 0.08 1.77 7.71 -51.93 -0.40 1.37 16 31 H 0.40 5.23 7.86 -40.82 -0.32 4.91 16 32 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 33 H 0.07 0.69 7.11 -51.93 -0.37 0.32 16 34 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.50 8.06 -51.93 -0.42 0.09 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.07 7.26 -51.93 -0.38 0.69 16 40 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 41 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -31.95 343.73 -9.52 -41.47 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -7.17 Total: 12.87 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -3.09 Total: -10.36 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.20 Total: -55.58 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.72 Total: 16.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.95 -9.52 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733247586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.767 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds