Wall clock time and date at job start Tue Mar 31 2020 00:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99953 * 2 1 4 4 H 1.48497 * 109.47367 * 270.00493 * 3 2 1 5 5 H 1.48502 * 109.46854 * 30.00402 * 3 2 1 6 6 H 1.48499 * 109.47057 * 149.99976 * 3 2 1 7 7 C 1.38812 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99757 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99953 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99886 * 185.38741 * 9 7 2 11 11 C 1.52996 * 115.55161 * 294.73138 * 10 9 7 12 12 N 1.46504 * 109.47063 * 275.47633 * 11 10 9 13 13 C 1.34776 * 119.99924 * 181.48142 * 12 11 10 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99600 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.26869 * 59.50877 * 15 13 12 17 17 C 1.52867 * 109.26876 * 299.99591 * 15 13 12 18 18 C 1.53303 * 108.58777 * 184.87858 * 17 15 13 19 19 C 1.52875 * 108.57937 * 74.44974 * 18 17 15 20 20 C 1.52704 * 110.15252 * 305.47364 * 19 18 17 21 21 H 1.09003 * 115.39368 * 231.21781 * 20 19 18 22 22 C 1.53655 * 116.03113 * 90.20525 * 20 19 18 23 23 C 1.52075 * 120.52369 * 21.47144 * 20 19 18 24 24 H 1.08996 * 115.31555 * 211.01086 * 23 20 19 25 25 C 1.53008 * 117.49602 * 80.39994 * 10 9 7 26 26 C 1.52996 * 117.49692 * 149.05768 * 10 9 7 27 27 H 0.97002 * 120.00015 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00258 * 5.39240 * 9 7 2 29 29 H 1.08997 * 109.46993 * 155.47647 * 11 10 9 30 30 H 1.09001 * 109.47540 * 35.47877 * 11 10 9 31 31 H 0.97002 * 119.99598 * 1.47959 * 12 11 10 32 32 H 1.09001 * 109.61428 * 65.15389 * 17 15 13 33 33 H 1.08992 * 109.62419 * 304.61108 * 17 15 13 34 34 H 1.08998 * 109.62286 * 314.71869 * 18 17 15 35 35 H 1.09006 * 109.61513 * 194.17456 * 18 17 15 36 36 H 1.09002 * 109.36156 * 65.68314 * 19 18 17 37 37 H 1.08999 * 109.35735 * 185.26518 * 19 18 17 38 38 H 1.08998 * 117.53744 * 140.94129 * 22 20 19 39 39 H 1.08994 * 117.53770 * 355.68889 * 22 20 19 40 40 H 1.08999 * 117.49341 * 215.00213 * 25 10 9 41 41 H 1.08998 * 117.49509 * 0.02562 * 25 10 9 42 42 H 1.09004 * 117.49902 * 359.97438 * 26 10 9 43 43 H 1.08999 * 117.50041 * 144.97691 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4652 -0.1208 11 6 3.9425 -3.4396 1.0465 12 7 4.8900 -3.0973 2.1101 13 6 4.9423 -3.8428 3.2317 14 8 4.2053 -4.7973 3.3603 15 6 5.9174 -3.4909 4.3255 16 1 5.7119 -2.4806 4.6793 17 6 7.3407 -3.5515 3.7711 18 6 8.3242 -3.3119 4.9224 19 6 8.3785 -4.5717 5.7868 20 6 6.9730 -4.9589 6.2412 21 1 6.8577 -5.1273 7.3119 22 6 6.2045 -5.9147 5.3156 23 6 5.7522 -4.4693 5.4779 24 1 4.8569 -4.3152 6.0801 25 6 4.2688 -3.0610 -1.5213 26 6 5.4731 -2.4291 -0.8188 27 1 -0.4850 0.8401 0.0004 28 1 3.8647 -0.3658 0.0779 29 1 4.1343 -4.4558 0.7022 30 1 2.9248 -3.3723 1.4310 31 1 5.4798 -2.3340 2.0070 32 1 7.4710 -2.7801 3.0121 33 1 7.5217 -4.5333 3.3336 34 1 7.9846 -2.4692 5.5246 35 1 9.3150 -3.1015 4.5195 36 1 8.8090 -5.3888 5.2080 37 1 9.0018 -4.3834 6.6610 38 1 5.5960 -6.6886 5.7834 39 1 6.6768 -6.1921 4.3733 40 1 4.2510 -4.1471 -1.6110 41 1 3.8272 -2.5129 -2.3536 42 1 5.8233 -1.4657 -1.1894 43 1 6.2478 -3.0993 -0.4462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733247586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:07 Heat of formation + Delta-G solvation = -6.699507 kcal Electronic energy + Delta-G solvation = -22059.859726 eV Core-core repulsion = 18912.358055 eV Total energy + Delta-G solvation = -3147.501670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50819 -39.76899 -38.76807 -35.41139 -34.88750 -33.85767 -32.37194 -32.13909 -28.05516 -25.99925 -25.61663 -23.56949 -23.28700 -22.58805 -21.20463 -20.69140 -19.74167 -19.34051 -18.10154 -17.34989 -17.15667 -16.46508 -16.29004 -15.96677 -15.46116 -14.86940 -14.80488 -14.74094 -14.60909 -14.26515 -14.09904 -13.73745 -13.51741 -13.09732 -12.98773 -12.91682 -12.30184 -12.29133 -12.18868 -12.03836 -11.87116 -11.76062 -11.73136 -11.29058 -11.10685 -11.02776 -10.79936 -10.63368 -10.38630 -10.00297 -9.33450 -8.02968 -5.39142 1.35776 1.41688 1.48312 1.71233 2.14636 2.47385 2.87103 3.05394 3.27904 3.40471 3.57387 3.75506 3.78606 3.82910 4.03528 4.11443 4.15013 4.24553 4.27463 4.30023 4.53939 4.57568 4.67835 4.74340 4.77797 4.81955 4.85126 4.91622 5.02894 5.10099 5.12392 5.16488 5.20149 5.32099 5.34289 5.35930 5.38805 5.50482 5.52800 5.78517 6.20349 6.65653 7.06328 7.33901 7.80061 8.00096 9.18683 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.004173 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.739401 B = 6708.736930 C = 6856.449869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.065 4.065 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.245 1.245 7 C -0.225 4.225 8 H 0.049 0.951 9 N -0.715 5.715 10 C 0.098 3.902 11 C 0.161 3.839 12 N -0.706 5.706 13 C 0.508 3.492 14 O -0.585 6.585 15 C -0.067 4.067 16 H 0.111 0.889 17 C -0.109 4.109 18 C -0.113 4.113 19 C -0.091 4.091 20 C -0.127 4.127 21 H 0.112 0.888 22 C -0.176 4.176 23 C -0.136 4.136 24 H 0.083 0.917 25 C -0.187 4.187 26 C -0.142 4.142 27 H 0.257 0.743 28 H 0.371 0.629 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.411 0.589 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.826 -6.174 9.038 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.787 3.213 4 H -0.204 1.204 5 H -0.227 1.227 6 H -0.169 1.169 7 C -0.356 4.356 8 H 0.067 0.933 9 N -0.357 5.357 10 C 0.007 3.993 11 C 0.034 3.966 12 N -0.357 5.357 13 C 0.295 3.705 14 O -0.465 6.465 15 C -0.088 4.088 16 H 0.129 0.871 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.128 4.128 20 C -0.146 4.146 21 H 0.130 0.870 22 C -0.213 4.213 23 C -0.155 4.155 24 H 0.102 0.898 25 C -0.227 4.227 26 C -0.180 4.180 27 H 0.066 0.934 28 H 0.206 0.794 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.247 0.753 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.074 -6.912 9.110 25.752 hybrid contribution -0.861 1.184 -0.186 1.476 sum 22.213 -5.728 8.925 24.615 Atomic orbital electron populations 1.69909 1.07411 1.26709 1.59575 1.25552 0.96076 1.01451 1.02483 0.85339 0.78702 0.79158 0.78069 1.20442 1.22718 1.16910 1.18856 0.82428 0.93107 1.41205 0.93326 1.41981 1.01978 1.03126 1.88626 1.20262 0.98005 0.89046 0.92026 1.20862 0.91928 0.96773 0.87006 1.45878 1.39852 1.32422 1.17552 1.21318 0.83887 0.81959 0.83311 1.90661 1.44780 1.30689 1.80364 1.20657 0.95324 1.00889 0.91913 0.87147 1.21636 0.91029 1.02919 0.99091 1.21576 0.99470 0.98003 0.96000 1.21125 0.93259 0.98038 1.00382 1.22442 0.92484 1.02038 0.97591 0.87029 1.22959 1.04304 0.92670 1.01377 1.21375 0.98581 0.96340 0.99156 0.89834 1.23387 1.02752 1.00484 0.96115 1.23251 0.89897 1.03311 1.01500 0.93382 0.79411 0.91444 0.95255 0.75300 0.89453 0.91978 0.90966 0.89537 0.91399 0.89814 0.89793 0.89585 0.87953 0.90031 0.87751 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.73 13.97 21.65 0.30 -63.43 16 2 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 3 Si 0.96 44.39 27.79 68.60 1.91 46.29 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.24 -9.81 6.45 99.48 0.64 -9.17 16 7 C -0.23 -12.71 10.01 84.03 0.84 -11.86 16 8 H 0.05 3.11 8.02 -2.91 -0.02 3.09 16 9 N -0.71 -31.60 5.29 -303.35 -1.60 -33.20 16 10 C 0.10 3.46 2.19 3.60 0.01 3.47 16 11 C 0.16 5.81 5.77 86.38 0.50 6.31 16 12 N -0.71 -20.70 5.37 -463.07 -2.49 -23.18 16 13 C 0.51 15.68 7.10 87.66 0.62 16.30 16 14 O -0.58 -23.47 15.65 -3.02 -0.05 -23.52 16 15 C -0.07 -1.46 2.58 -11.89 -0.03 -1.49 16 16 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 17 C -0.11 -1.68 4.82 30.65 0.15 -1.53 16 18 C -0.11 -1.30 5.93 30.65 0.18 -1.12 16 19 C -0.09 -1.12 5.83 30.45 0.18 -0.94 16 20 C -0.13 -2.15 6.19 -10.98 -0.07 -2.22 16 21 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 22 C -0.18 -3.93 9.16 30.59 0.28 -3.65 16 23 C -0.14 -3.11 4.69 -11.63 -0.05 -3.17 16 24 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 25 C -0.19 -5.86 10.11 30.62 0.31 -5.55 16 26 C -0.14 -3.53 9.95 30.62 0.30 -3.23 16 27 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 28 H 0.37 15.34 5.87 -92.71 -0.54 14.80 16 29 H 0.07 2.33 7.91 -2.39 -0.02 2.31 16 30 H 0.03 1.35 7.71 -2.39 -0.02 1.34 16 31 H 0.41 9.66 7.86 -92.71 -0.73 8.93 16 32 H 0.09 1.08 7.70 -2.39 -0.02 1.06 16 33 H 0.06 1.07 7.11 -2.39 -0.02 1.05 16 34 H 0.07 0.82 8.04 -2.39 -0.02 0.80 16 35 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.07 0.84 8.06 -2.39 -0.02 0.82 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.09 1.99 7.26 -2.39 -0.02 1.97 16 40 H 0.10 2.85 8.06 -2.39 -0.02 2.83 16 41 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 43 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -74.18 343.73 1.42 -72.76 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -0.33 Total: 36.28 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 3.68 Total: -12.00 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -3.79 Total: -119.81 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.91 Total: 46.29 kcal Total: -74.18 1.42 -72.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733247586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.059 kcal (2) G-P(sol) polarization free energy of solvation -74.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds