Wall clock time and date at job start Tue Mar 31 2020 00:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48504 * 109.47142 * 269.99845 * 3 2 1 5 5 H 1.48498 * 109.47286 * 29.99985 * 3 2 1 6 6 H 1.48503 * 109.47084 * 150.00461 * 3 2 1 7 7 C 1.38810 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99455 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00293 * 186.78896 * 9 7 2 11 11 C 1.53004 * 115.54823 * 39.95428 * 10 9 7 12 12 N 1.46497 * 109.47130 * 81.01919 * 11 10 9 13 13 C 1.34776 * 119.99880 * 175.01522 * 12 11 10 14 14 O 1.21280 * 120.00167 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99843 * 179.97438 * 13 12 11 16 16 C 1.53001 * 109.47006 * 179.97438 * 15 13 12 17 17 H 1.08993 * 110.43970 * 56.08966 * 16 15 13 18 18 C 1.54892 * 110.48618 * 293.54343 * 16 15 13 19 19 C 1.54893 * 102.75050 * 203.37949 * 18 16 15 20 20 C 1.54264 * 104.19299 * 37.94393 * 19 18 16 21 21 H 1.09000 * 117.41200 * 116.36902 * 20 19 18 22 22 C 1.52998 * 118.20092 * 270.99733 * 20 19 18 23 23 C 1.53870 * 106.60340 * 336.39149 * 20 19 18 24 24 H 1.09003 * 121.33775 * 138.06162 * 23 20 19 25 25 C 1.53001 * 117.50291 * 254.24266 * 10 9 7 26 26 C 1.53000 * 60.00133 * 252.51257 * 25 10 9 27 27 H 0.97001 * 120.00004 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99300 * 7.07388 * 9 7 2 29 29 H 1.08997 * 109.47093 * 201.01714 * 11 10 9 30 30 H 1.08996 * 109.46686 * 321.01720 * 11 10 9 31 31 H 0.97004 * 120.00366 * 355.00901 * 12 11 10 32 32 H 1.08998 * 109.47345 * 299.99931 * 15 13 12 33 33 H 1.09001 * 109.47459 * 60.00041 * 15 13 12 34 34 H 1.08999 * 110.75910 * 321.69577 * 18 16 15 35 35 H 1.09006 * 110.74897 * 84.88109 * 18 16 15 36 36 H 1.09000 * 110.48379 * 156.62220 * 19 18 16 37 37 H 1.08999 * 110.48713 * 279.13546 * 19 18 16 38 38 H 1.08998 * 117.46300 * 201.21440 * 22 20 19 39 39 H 1.08998 * 117.46363 * 346.04526 * 22 20 19 40 40 H 1.09004 * 117.49572 * 0.02562 * 25 10 9 41 41 H 1.08997 * 117.49620 * 145.02079 * 25 10 9 42 42 H 1.08997 * 117.49921 * 252.51514 * 26 25 10 43 43 H 1.08995 * 117.51984 * 107.47943 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0505 -3.6523 0.1489 11 6 3.1998 -3.6387 1.1588 12 7 2.6631 -3.8052 2.5117 13 6 3.5022 -3.9246 3.5596 14 8 4.7016 -3.8948 3.3825 15 6 2.9500 -4.0953 4.9513 16 6 4.1053 -4.2070 5.9482 17 1 4.7606 -3.3395 5.8702 18 6 4.9036 -5.5126 5.7087 19 6 5.5719 -5.7618 7.0837 20 6 4.4981 -5.3405 8.1080 21 1 4.1034 -6.1131 8.7678 22 6 4.4659 -3.8799 8.5624 23 6 3.5656 -4.3520 7.3862 24 1 2.4841 -4.3965 7.5141 25 6 2.2153 -4.5239 -1.0978 26 6 1.2480 -4.9475 0.0094 27 1 -0.4850 0.8400 0.0004 28 1 0.3612 -2.3912 -0.1036 29 1 3.8875 -4.4550 0.9378 30 1 3.7302 -2.6888 1.0926 31 1 1.7038 -3.8293 2.6534 32 1 2.3325 -3.2338 5.2054 33 1 2.3452 -5.0011 4.9938 34 1 4.2340 -6.3330 5.4504 35 1 5.6543 -5.3693 4.9315 36 1 5.8190 -6.8168 7.2021 37 1 6.4657 -5.1472 7.1904 38 1 3.9729 -3.6587 9.5090 39 1 5.3324 -3.2614 8.3283 40 1 1.7847 -4.1564 -2.0293 41 1 3.1427 -5.0876 -1.1987 42 1 1.5391 -5.7899 0.6368 43 1 0.1808 -4.8589 -0.1932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733248289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:55 Heat of formation + Delta-G solvation = 13.787905 kcal Electronic energy + Delta-G solvation = -21635.378717 eV Core-core repulsion = 18488.765448 eV Total energy + Delta-G solvation = -3146.613270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.02367 -38.83771 -37.42682 -33.63658 -33.09205 -32.61057 -30.45856 -29.76635 -27.09385 -24.69131 -23.92457 -22.81044 -21.86292 -20.51763 -19.88657 -19.51991 -19.03867 -17.29152 -16.59968 -16.07750 -15.66976 -15.34058 -14.74469 -14.72092 -14.12213 -13.84085 -13.41119 -13.06913 -13.03080 -12.91735 -12.86967 -12.27097 -11.93007 -11.67779 -11.27713 -11.15946 -11.03767 -10.97700 -10.92623 -10.76003 -10.66791 -10.38020 -10.27930 -10.17885 -9.80555 -9.70878 -9.55087 -9.41962 -8.78229 -8.49652 -7.02979 -5.88755 -3.18655 3.03367 3.38703 3.45223 3.47035 3.48005 3.55669 4.37755 4.47355 4.56363 4.62100 4.67216 4.97681 5.06742 5.20072 5.25483 5.26126 5.31509 5.42489 5.43474 5.45061 5.50298 5.60327 5.63090 5.67708 5.81143 5.82275 5.88625 5.92660 6.09520 6.11391 6.15088 6.23685 6.31248 6.43884 6.45321 6.56980 6.63779 6.74714 6.94019 7.65465 7.97950 8.29520 8.64443 9.40953 9.93418 10.28910 11.32889 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.004077 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.001510 B = 6865.814194 C = 7816.928164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.684 5.684 10 C 0.141 3.859 11 C 0.154 3.846 12 N -0.711 5.711 13 C 0.509 3.491 14 O -0.551 6.551 15 C -0.133 4.133 16 C -0.044 4.044 17 H 0.082 0.918 18 C -0.115 4.115 19 C -0.098 4.098 20 C -0.166 4.166 21 H 0.105 0.895 22 C -0.157 4.157 23 C -0.163 4.163 24 H 0.111 0.889 25 C -0.209 4.209 26 C -0.196 4.196 27 H 0.257 0.743 28 H 0.388 0.612 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.402 0.598 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 -12.270 13.048 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.092 0.908 9 N -0.322 5.322 10 C 0.047 3.953 11 C 0.030 3.970 12 N -0.361 5.361 13 C 0.295 3.705 14 O -0.430 6.430 15 C -0.173 4.173 16 C -0.063 4.063 17 H 0.101 0.899 18 C -0.152 4.152 19 C -0.135 4.135 20 C -0.184 4.184 21 H 0.123 0.877 22 C -0.194 4.194 23 C -0.181 4.181 24 H 0.129 0.871 25 C -0.251 4.251 26 C -0.234 4.234 27 H 0.067 0.933 28 H 0.223 0.777 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.236 0.764 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.028 -12.039 12.936 18.671 hybrid contribution -0.614 0.910 -0.086 1.101 sum 5.414 -11.129 12.850 17.841 Atomic orbital electron populations 1.69667 1.05160 1.25971 1.56870 1.24774 0.95500 0.97812 1.02204 0.86193 0.78843 0.83560 0.77668 1.21528 1.21667 1.20521 1.19173 0.91225 0.83484 1.43487 0.90816 1.41878 1.06278 0.98936 1.85064 1.20155 0.94944 0.84902 0.95339 1.21005 0.94504 1.01795 0.79732 1.45916 1.10198 1.72985 1.06983 1.20557 0.86911 0.76368 0.86616 1.90645 1.15267 1.51009 1.86051 1.21677 0.99398 1.04078 0.92121 1.21280 0.95387 0.99302 0.90345 0.89925 1.22744 0.99425 0.96226 0.96811 1.21978 0.96992 1.00856 0.93681 1.23265 1.00763 0.92684 1.01681 0.87742 1.23420 1.01734 0.96458 0.97743 1.23695 0.97012 1.05654 0.91721 0.87111 1.23563 1.00129 1.06159 0.95294 1.23111 0.97766 0.98823 1.03746 0.93336 0.77671 0.92131 0.90337 0.76422 0.88797 0.89175 0.91906 0.89929 0.91566 0.91568 0.88659 0.88916 0.89063 0.90040 0.89539 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.03 13.07 55.49 0.73 -26.31 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.48 9.32 -15.06 -0.14 -6.62 16 8 H 0.07 1.96 6.62 -52.48 -0.35 1.61 16 9 N -0.68 -16.26 5.61 -47.23 -0.26 -16.53 16 10 C 0.14 2.70 2.43 -131.82 -0.32 2.38 16 11 C 0.15 2.86 5.52 -4.04 -0.02 2.84 16 12 N -0.71 -11.61 5.51 -60.30 -0.33 -11.94 16 13 C 0.51 8.13 7.61 -10.99 -0.08 8.04 16 14 O -0.55 -10.49 14.50 5.56 0.08 -10.41 16 15 C -0.13 -1.59 5.19 -27.88 -0.14 -1.74 16 16 C -0.04 -0.53 2.29 -88.95 -0.20 -0.73 16 17 H 0.08 1.14 8.02 -51.93 -0.42 0.72 16 18 C -0.11 -1.33 5.63 -24.73 -0.14 -1.47 16 19 C -0.10 -0.96 6.62 -25.07 -0.17 -1.13 16 20 C -0.17 -1.55 6.85 -89.51 -0.61 -2.16 16 21 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 22 C -0.16 -1.44 10.21 -25.42 -0.26 -1.70 16 23 C -0.16 -1.63 6.46 -88.19 -0.57 -2.20 16 24 H 0.11 1.01 8.05 -51.93 -0.42 0.59 16 25 C -0.21 -3.60 10.10 -26.73 -0.27 -3.87 16 26 C -0.20 -3.12 10.09 -26.73 -0.27 -3.39 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.39 9.82 8.00 -40.82 -0.33 9.49 16 29 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 30 H 0.08 1.69 6.44 -51.93 -0.33 1.36 16 31 H 0.40 6.07 8.48 -40.82 -0.35 5.73 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 35 H 0.08 1.13 7.05 -51.93 -0.37 0.76 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -29.80 349.78 -10.01 -39.81 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -7.16 Total: 15.04 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -3.30 Total: -12.02 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.13 Total: -54.78 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.80 -10.01 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733248289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.598 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds