Wall clock time and date at job start Tue Mar 31 2020 00:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48504 * 109.47142 * 269.99845 * 3 2 1 5 5 H 1.48498 * 109.47286 * 29.99985 * 3 2 1 6 6 H 1.48503 * 109.47084 * 150.00461 * 3 2 1 7 7 C 1.38810 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99455 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00293 * 186.78896 * 9 7 2 11 11 C 1.53004 * 115.54823 * 39.95428 * 10 9 7 12 12 N 1.46497 * 109.47130 * 81.01919 * 11 10 9 13 13 C 1.34776 * 119.99880 * 175.01522 * 12 11 10 14 14 O 1.21280 * 120.00167 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99843 * 179.97438 * 13 12 11 16 16 C 1.53001 * 109.47006 * 179.97438 * 15 13 12 17 17 H 1.08993 * 110.43970 * 56.08966 * 16 15 13 18 18 C 1.54892 * 110.48618 * 293.54343 * 16 15 13 19 19 C 1.54893 * 102.75050 * 203.37949 * 18 16 15 20 20 C 1.54264 * 104.19299 * 37.94393 * 19 18 16 21 21 H 1.09000 * 117.41200 * 116.36902 * 20 19 18 22 22 C 1.52998 * 118.20092 * 270.99733 * 20 19 18 23 23 C 1.53870 * 106.60340 * 336.39149 * 20 19 18 24 24 H 1.09003 * 121.33775 * 138.06162 * 23 20 19 25 25 C 1.53001 * 117.50291 * 254.24266 * 10 9 7 26 26 C 1.53000 * 60.00133 * 252.51257 * 25 10 9 27 27 H 0.97001 * 120.00004 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99300 * 7.07388 * 9 7 2 29 29 H 1.08997 * 109.47093 * 201.01714 * 11 10 9 30 30 H 1.08996 * 109.46686 * 321.01720 * 11 10 9 31 31 H 0.97004 * 120.00366 * 355.00901 * 12 11 10 32 32 H 1.08998 * 109.47345 * 299.99931 * 15 13 12 33 33 H 1.09001 * 109.47459 * 60.00041 * 15 13 12 34 34 H 1.08999 * 110.75910 * 321.69577 * 18 16 15 35 35 H 1.09006 * 110.74897 * 84.88109 * 18 16 15 36 36 H 1.09000 * 110.48379 * 156.62220 * 19 18 16 37 37 H 1.08999 * 110.48713 * 279.13546 * 19 18 16 38 38 H 1.08998 * 117.46300 * 201.21440 * 22 20 19 39 39 H 1.08998 * 117.46363 * 346.04526 * 22 20 19 40 40 H 1.09004 * 117.49572 * 0.02562 * 25 10 9 41 41 H 1.08997 * 117.49620 * 145.02079 * 25 10 9 42 42 H 1.08997 * 117.49921 * 252.51514 * 26 25 10 43 43 H 1.08995 * 117.51984 * 107.47943 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0505 -3.6523 0.1489 11 6 3.1998 -3.6387 1.1588 12 7 2.6631 -3.8052 2.5117 13 6 3.5022 -3.9246 3.5596 14 8 4.7016 -3.8948 3.3825 15 6 2.9500 -4.0953 4.9513 16 6 4.1053 -4.2070 5.9482 17 1 4.7606 -3.3395 5.8702 18 6 4.9036 -5.5126 5.7087 19 6 5.5719 -5.7618 7.0837 20 6 4.4981 -5.3405 8.1080 21 1 4.1034 -6.1131 8.7678 22 6 4.4659 -3.8799 8.5624 23 6 3.5656 -4.3520 7.3862 24 1 2.4841 -4.3965 7.5141 25 6 2.2153 -4.5239 -1.0978 26 6 1.2480 -4.9475 0.0094 27 1 -0.4850 0.8400 0.0004 28 1 0.3612 -2.3912 -0.1036 29 1 3.8875 -4.4550 0.9378 30 1 3.7302 -2.6888 1.0926 31 1 1.7038 -3.8293 2.6534 32 1 2.3325 -3.2338 5.2054 33 1 2.3452 -5.0011 4.9938 34 1 4.2340 -6.3330 5.4504 35 1 5.6543 -5.3693 4.9315 36 1 5.8190 -6.8168 7.2021 37 1 6.4657 -5.1472 7.1904 38 1 3.9729 -3.6587 9.5090 39 1 5.3324 -3.2614 8.3283 40 1 1.7847 -4.1564 -2.0293 41 1 3.1427 -5.0876 -1.1987 42 1 1.5391 -5.7899 0.6368 43 1 0.1808 -4.8589 -0.1932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733248289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:54 Heat of formation + Delta-G solvation = -4.052179 kcal Electronic energy + Delta-G solvation = -21636.152321 eV Core-core repulsion = 18488.765448 eV Total energy + Delta-G solvation = -3147.386874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11029 -39.94879 -38.87928 -35.24328 -34.82027 -33.55294 -31.70129 -31.32851 -28.38024 -25.97374 -25.75336 -23.62164 -23.21186 -21.46819 -21.09608 -20.58268 -20.28889 -19.23406 -17.92916 -17.29637 -16.93063 -16.47398 -16.18674 -15.88110 -15.77379 -15.41553 -14.72769 -14.42865 -14.25754 -13.96076 -13.69145 -13.60844 -13.50230 -12.97557 -12.89987 -12.71875 -12.29839 -12.21392 -12.12679 -12.03224 -11.97078 -11.79451 -11.64578 -11.55629 -11.05995 -10.98075 -10.82694 -10.52831 -10.48854 -9.92199 -8.93630 -7.99127 -5.26862 1.44198 1.45276 1.53229 1.75962 2.27466 2.50867 2.74747 3.10809 3.42660 3.57511 3.65228 3.71067 3.83204 3.86364 4.03373 4.13802 4.25323 4.33619 4.35171 4.42634 4.55931 4.58662 4.66843 4.70346 4.82260 4.84160 4.93712 4.96138 4.97604 5.02325 5.04771 5.12665 5.14251 5.25834 5.37007 5.38719 5.40821 5.53651 5.56077 5.58273 6.24084 6.69686 7.30660 7.36681 8.02289 8.26732 9.23216 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.004077 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.001510 B = 6865.814194 C = 7816.928164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.063 4.063 3 Si 0.961 3.039 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.069 0.931 9 N -0.695 5.695 10 C 0.111 3.889 11 C 0.164 3.836 12 N -0.708 5.708 13 C 0.505 3.495 14 O -0.586 6.586 15 C -0.124 4.124 16 C -0.046 4.046 17 H 0.054 0.946 18 C -0.114 4.114 19 C -0.098 4.098 20 C -0.160 4.160 21 H 0.122 0.878 22 C -0.158 4.158 23 C -0.168 4.168 24 H 0.126 0.874 25 C -0.203 4.203 26 C -0.162 4.162 27 H 0.252 0.748 28 H 0.379 0.621 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.409 0.591 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -14.069 14.410 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.256 4.256 3 Si 0.791 3.209 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.019 3.981 11 C 0.039 3.961 12 N -0.358 5.358 13 C 0.293 3.707 14 O -0.467 6.467 15 C -0.163 4.163 16 C -0.065 4.065 17 H 0.073 0.927 18 C -0.151 4.151 19 C -0.135 4.135 20 C -0.177 4.177 21 H 0.140 0.860 22 C -0.195 4.195 23 C -0.186 4.186 24 H 0.144 0.856 25 C -0.245 4.245 26 C -0.200 4.200 27 H 0.061 0.939 28 H 0.212 0.788 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.245 0.755 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.133 0.867 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.741 -13.882 14.301 20.741 hybrid contribution -0.435 1.375 -0.547 1.543 sum 5.305 -12.507 13.754 19.332 Atomic orbital electron populations 1.69783 1.06209 1.26058 1.59109 1.25395 0.96225 1.00454 1.03501 0.85327 0.77690 0.80433 0.77451 1.21380 1.21912 1.20338 1.19372 0.91133 0.84789 1.41176 0.91337 1.41895 1.05854 0.99858 1.85677 1.20360 0.96328 0.84478 0.96959 1.20749 0.94250 1.00181 0.80915 1.45910 1.10653 1.72896 1.06378 1.21304 0.86409 0.75134 0.87862 1.90636 1.16927 1.52452 1.86699 1.21702 0.99627 1.05856 0.89138 1.21229 0.95045 0.98294 0.91917 0.92742 1.22689 0.98989 0.96419 0.97027 1.21973 0.96908 1.01679 0.92939 1.23322 0.99940 0.93075 1.01411 0.85959 1.23511 1.01387 0.96410 0.98144 1.23668 0.97895 1.06596 0.90420 0.85565 1.23555 1.01539 1.05099 0.94257 1.23169 0.97579 0.97000 1.02265 0.93913 0.78815 0.91013 0.94160 0.75550 0.87810 0.86238 0.91010 0.92747 0.90140 0.92311 0.86885 0.89820 0.90247 0.87912 0.86670 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.79 13.07 21.65 0.28 -56.51 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 3 Si 0.96 46.16 29.55 68.60 2.03 48.18 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.23 -12.58 9.32 84.03 0.78 -11.80 16 8 H 0.07 3.71 6.62 -2.91 -0.02 3.69 16 9 N -0.70 -33.17 5.61 -303.34 -1.70 -34.87 16 10 C 0.11 4.14 2.43 3.61 0.01 4.14 16 11 C 0.16 6.02 5.52 86.38 0.48 6.50 16 12 N -0.71 -22.47 5.51 -463.07 -2.55 -25.02 16 13 C 0.50 15.81 7.61 87.66 0.67 16.48 16 14 O -0.59 -22.66 14.50 -3.03 -0.04 -22.71 16 15 C -0.12 -2.76 5.19 29.85 0.15 -2.60 16 16 C -0.05 -1.05 2.29 -9.71 -0.02 -1.07 16 17 H 0.05 1.54 8.02 -2.39 -0.02 1.52 16 18 C -0.11 -2.56 5.63 31.89 0.18 -2.38 16 19 C -0.10 -1.79 6.62 31.67 0.21 -1.58 16 20 C -0.16 -2.58 6.85 -10.07 -0.07 -2.65 16 21 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 22 C -0.16 -2.59 10.21 31.44 0.32 -2.27 16 23 C -0.17 -2.98 6.46 -9.22 -0.06 -3.04 16 24 H 0.13 1.87 8.05 -2.39 -0.02 1.86 16 25 C -0.20 -6.57 10.10 30.59 0.31 -6.26 16 26 C -0.16 -4.70 10.09 30.60 0.31 -4.39 16 27 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.38 19.28 8.00 -92.71 -0.74 18.54 16 29 H 0.07 2.45 7.93 -2.39 -0.02 2.43 16 30 H 0.04 1.78 6.44 -2.39 -0.02 1.76 16 31 H 0.41 11.74 8.48 -92.71 -0.79 10.95 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.12 1.99 8.10 -2.39 -0.02 1.97 16 34 H 0.07 1.46 8.02 -2.39 -0.02 1.44 16 35 H 0.05 1.52 7.05 -2.38 -0.02 1.50 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 41 H 0.10 2.89 8.08 -2.39 -0.02 2.88 16 42 H 0.12 2.73 8.14 -2.39 -0.02 2.72 16 43 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -65.26 349.78 1.23 -64.03 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -0.52 Total: 40.86 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 3.74 Total: -13.97 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -3.97 Total: -116.40 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.04 Total: -22.71 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -65.26 1.23 -64.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733248289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.978 kcal (2) G-P(sol) polarization free energy of solvation -65.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds