Wall clock time and date at job start Tue Mar 31 2020 00:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00316 * 2 1 4 4 H 1.48497 * 109.46981 * 270.00077 * 3 2 1 5 5 H 1.48501 * 109.46835 * 29.99789 * 3 2 1 6 6 H 1.48496 * 109.47089 * 149.99668 * 3 2 1 7 7 C 1.38812 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99778 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00249 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00293 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46981 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.91365 * 51.10707 * 11 10 9 13 13 C 1.55151 * 111.00935 * 287.20078 * 11 10 9 14 14 C 1.54314 * 102.86520 * 206.23180 * 13 11 10 15 15 N 1.47020 * 107.27690 * 22.52478 * 14 13 11 16 16 C 1.34776 * 125.64840 * 180.96475 * 15 14 13 17 17 O 1.21281 * 119.99940 * 184.62896 * 16 15 14 18 18 C 1.50703 * 119.99944 * 4.63994 * 16 15 14 19 19 C 1.52995 * 119.29519 * 271.78036 * 18 16 15 20 20 C 1.53163 * 60.49241 * 247.80687 * 19 18 16 21 21 H 1.08998 * 119.93316 * 111.13787 * 20 19 18 22 22 C 1.54270 * 118.09499 * 266.59841 * 20 19 18 23 23 C 1.54889 * 104.31006 * 87.61424 * 22 20 19 24 24 C 1.54262 * 117.41281 * 66.12223 * 18 16 15 25 25 C 1.47425 * 108.70385 * 0.70558 * 15 14 13 26 26 H 0.97007 * 119.99719 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99351 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.46685 * 60.00190 * 10 9 7 29 29 H 1.08997 * 109.47437 * 300.00831 * 10 9 7 30 30 H 1.09010 * 110.72097 * 324.78711 * 13 11 10 31 31 H 1.09001 * 110.72211 * 87.88121 * 13 11 10 32 32 H 1.08999 * 109.98763 * 263.04521 * 14 13 11 33 33 H 1.09009 * 109.77257 * 141.88524 * 14 13 11 34 34 H 1.09008 * 117.46540 * 355.35963 * 19 18 16 35 35 H 1.09004 * 117.46154 * 140.18226 * 19 18 16 36 36 H 1.08996 * 110.48715 * 328.86976 * 22 20 19 37 37 H 1.09002 * 110.48518 * 206.35743 * 22 20 19 38 38 H 1.08995 * 110.75826 * 80.30814 * 23 22 20 39 39 H 1.09000 * 110.75129 * 203.67764 * 23 22 20 40 40 H 1.08998 * 110.48744 * 358.90566 * 24 18 16 41 41 H 1.09004 * 110.60051 * 236.31211 * 24 18 16 42 42 H 1.08999 * 110.36978 * 94.93346 * 25 15 14 43 43 H 1.08998 * 110.36868 * 217.25991 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8196 0.0012 12 1 0.3246 -4.7001 -0.7910 13 6 0.3771 -4.9637 1.3851 14 6 -0.0022 -6.4590 1.4264 15 7 0.8817 -7.1599 0.4835 16 6 0.8550 -8.4804 0.2154 17 8 1.6880 -8.9669 -0.5197 18 6 -0.2101 -9.3525 0.8288 19 6 0.0364 -9.9816 2.2016 20 6 -0.0408 -10.8795 0.9631 21 1 0.8542 -11.3861 0.6021 22 6 -1.4047 -11.5031 0.6017 23 6 -2.0913 -10.4347 -0.2850 24 6 -1.6686 -9.1066 0.3909 25 6 1.7978 -6.1780 -0.1248 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0002 28 1 2.6845 -3.7145 0.8906 29 1 2.6847 -3.7146 -0.8893 30 1 1.0718 -4.7160 2.1879 31 1 -0.5135 -4.3378 1.4409 32 1 -1.0419 -6.5880 1.1258 33 1 0.1459 -6.8493 2.4334 34 1 1.0172 -9.8338 2.6535 35 1 -0.8017 -10.0129 2.8979 36 1 -1.9912 -11.6858 1.5020 37 1 -1.2650 -12.4292 0.0440 38 1 -1.7178 -10.4835 -1.3078 39 1 -3.1747 -10.5520 -0.2622 40 1 -1.7194 -8.2831 -0.3214 41 1 -2.2994 -8.9012 1.2558 42 1 2.7414 -6.1511 0.4202 43 1 1.9711 -6.4198 -1.1734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752946473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:44 Heat of formation + Delta-G solvation = -3.888022 kcal Electronic energy + Delta-G solvation = -21739.519519 eV Core-core repulsion = 18592.139764 eV Total energy + Delta-G solvation = -3147.379755 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73573 -38.90055 -37.25654 -34.67554 -32.28333 -31.90346 -30.25749 -29.28512 -28.46987 -25.62365 -23.83326 -22.88275 -22.35277 -21.33320 -20.53504 -20.03901 -18.60786 -17.19493 -16.90481 -16.15724 -15.98918 -15.30372 -14.72495 -14.39101 -13.88437 -13.63416 -13.51240 -13.47364 -13.31286 -13.12157 -12.78599 -12.56405 -12.46843 -11.95086 -11.66375 -11.38511 -11.36402 -11.22771 -11.16587 -10.87369 -10.67804 -10.65847 -10.46479 -10.38657 -10.07137 -9.94144 -9.73333 -9.64197 -8.89035 -8.59395 -6.94182 -5.78434 -3.07021 2.54218 2.90274 3.31009 3.43007 3.48325 3.49722 4.13177 4.35779 4.37235 4.54554 4.58282 4.78027 4.87663 4.92652 5.05638 5.11556 5.15804 5.25849 5.34181 5.37034 5.42974 5.49007 5.55311 5.56379 5.61292 5.69010 5.78772 5.79016 5.89909 5.91893 6.03256 6.04535 6.07784 6.12526 6.24397 6.38523 6.44821 6.71693 6.83418 7.55201 7.68992 8.17323 8.40527 9.51968 10.08909 10.43891 11.44479 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042528 B = 0.003087 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.232556 B = 9069.249856 C = 9312.895058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.085 0.915 13 C -0.122 4.122 14 C 0.103 3.897 15 N -0.611 5.611 16 C 0.570 3.430 17 O -0.544 6.544 18 C -0.170 4.170 19 C -0.129 4.129 20 C -0.130 4.130 21 H 0.117 0.883 22 C -0.096 4.096 23 C -0.123 4.123 24 C -0.081 4.081 25 C 0.113 3.887 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.862 -21.811 4.555 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.160 4.160 14 C -0.020 4.020 15 N -0.344 5.344 16 C 0.358 3.642 17 O -0.421 6.421 18 C -0.173 4.173 19 C -0.166 4.166 20 C -0.148 4.148 21 H 0.135 0.865 22 C -0.133 4.133 23 C -0.160 4.160 24 C -0.119 4.119 25 C -0.010 4.010 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.283 -22.023 4.144 22.815 hybrid contribution 0.193 1.119 -0.003 1.136 sum -4.090 -20.904 4.141 21.699 Atomic orbital electron populations 1.69657 1.05105 1.25656 1.57828 1.24735 0.95536 0.97694 1.03011 0.86184 0.78653 0.83788 0.77537 1.21718 1.21771 1.20758 1.19230 0.91065 0.84118 1.42635 0.91166 1.42307 1.05847 0.99825 1.89538 1.20548 0.92762 0.84882 0.98165 1.22569 0.98611 0.93652 0.97624 0.89707 1.22670 1.02120 0.93169 0.98015 1.22119 0.94049 0.93205 0.92641 1.48436 1.36451 1.06453 1.43020 1.18969 0.84218 0.80517 0.80510 1.90688 1.40203 1.73165 1.38079 1.22308 0.95846 0.96613 1.02503 1.23153 1.03440 1.00361 0.89655 1.23444 0.99891 0.90365 1.01142 0.86477 1.21983 0.93498 0.98221 0.99599 1.22688 1.00128 0.93663 0.99547 1.21880 0.91161 0.98352 1.00509 1.22270 0.92849 0.87022 0.98834 0.93521 0.78247 0.95948 0.96032 0.90282 0.89501 0.91453 0.91612 0.88143 0.88017 0.91093 0.90940 0.91067 0.90928 0.90890 0.90548 0.91227 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.08 5.55 -59.91 -0.33 -18.42 16 10 C 0.16 3.22 5.71 -4.05 -0.02 3.19 16 11 C -0.11 -1.65 3.04 -88.47 -0.27 -1.92 16 12 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.12 -1.68 6.37 -24.90 -0.16 -1.84 16 14 C 0.10 1.20 6.39 -3.07 -0.02 1.18 16 15 N -0.61 -8.40 3.33 -170.52 -0.57 -8.96 16 16 C 0.57 8.29 7.32 -10.98 -0.08 8.21 16 17 O -0.54 -9.90 17.21 5.56 0.10 -9.80 16 18 C -0.17 -1.84 1.88 -154.36 -0.29 -2.13 16 19 C -0.13 -1.13 9.85 -26.65 -0.26 -1.39 16 20 C -0.13 -1.24 6.71 -89.23 -0.60 -1.84 16 21 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 22 C -0.10 -0.72 6.61 -25.07 -0.17 -0.88 16 23 C -0.12 -0.98 6.91 -24.74 -0.17 -1.15 16 24 C -0.08 -0.74 5.52 -25.07 -0.14 -0.88 16 25 C 0.11 1.66 6.36 -2.52 -0.02 1.64 16 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.38 9.89 7.67 -40.82 -0.31 9.58 16 28 H 0.02 0.44 7.97 -51.93 -0.41 0.03 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.12 7.91 -51.92 -0.41 0.71 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 0.71 7.20 -51.93 -0.37 0.33 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 43 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -32.10 346.75 -9.69 -41.79 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.38 Total: 5.15 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.44 Total: -5.09 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.18 Total: -54.54 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.10 Total: -9.80 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.10 -9.69 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752946473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.903 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds