Wall clock time and date at job start Tue Mar 31 2020 00:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00316 * 2 1 4 4 H 1.48497 * 109.46981 * 270.00077 * 3 2 1 5 5 H 1.48501 * 109.46835 * 29.99789 * 3 2 1 6 6 H 1.48496 * 109.47089 * 149.99668 * 3 2 1 7 7 C 1.38812 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99778 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00249 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00293 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46981 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.91365 * 51.10707 * 11 10 9 13 13 C 1.55151 * 111.00935 * 287.20078 * 11 10 9 14 14 C 1.54314 * 102.86520 * 206.23180 * 13 11 10 15 15 N 1.47020 * 107.27690 * 22.52478 * 14 13 11 16 16 C 1.34776 * 125.64840 * 180.96475 * 15 14 13 17 17 O 1.21281 * 119.99940 * 184.62896 * 16 15 14 18 18 C 1.50703 * 119.99944 * 4.63994 * 16 15 14 19 19 C 1.52995 * 119.29519 * 271.78036 * 18 16 15 20 20 C 1.53163 * 60.49241 * 247.80687 * 19 18 16 21 21 H 1.08998 * 119.93316 * 111.13787 * 20 19 18 22 22 C 1.54270 * 118.09499 * 266.59841 * 20 19 18 23 23 C 1.54889 * 104.31006 * 87.61424 * 22 20 19 24 24 C 1.54262 * 117.41281 * 66.12223 * 18 16 15 25 25 C 1.47425 * 108.70385 * 0.70558 * 15 14 13 26 26 H 0.97007 * 119.99719 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99351 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.46685 * 60.00190 * 10 9 7 29 29 H 1.08997 * 109.47437 * 300.00831 * 10 9 7 30 30 H 1.09010 * 110.72097 * 324.78711 * 13 11 10 31 31 H 1.09001 * 110.72211 * 87.88121 * 13 11 10 32 32 H 1.08999 * 109.98763 * 263.04521 * 14 13 11 33 33 H 1.09009 * 109.77257 * 141.88524 * 14 13 11 34 34 H 1.09008 * 117.46540 * 355.35963 * 19 18 16 35 35 H 1.09004 * 117.46154 * 140.18226 * 19 18 16 36 36 H 1.08996 * 110.48715 * 328.86976 * 22 20 19 37 37 H 1.09002 * 110.48518 * 206.35743 * 22 20 19 38 38 H 1.08995 * 110.75826 * 80.30814 * 23 22 20 39 39 H 1.09000 * 110.75129 * 203.67764 * 23 22 20 40 40 H 1.08998 * 110.48744 * 358.90566 * 24 18 16 41 41 H 1.09004 * 110.60051 * 236.31211 * 24 18 16 42 42 H 1.08999 * 110.36978 * 94.93346 * 25 15 14 43 43 H 1.08998 * 110.36868 * 217.25991 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8196 0.0012 12 1 0.3246 -4.7001 -0.7910 13 6 0.3771 -4.9637 1.3851 14 6 -0.0022 -6.4590 1.4264 15 7 0.8817 -7.1599 0.4835 16 6 0.8550 -8.4804 0.2154 17 8 1.6880 -8.9669 -0.5197 18 6 -0.2101 -9.3525 0.8288 19 6 0.0364 -9.9816 2.2016 20 6 -0.0408 -10.8795 0.9631 21 1 0.8542 -11.3861 0.6021 22 6 -1.4047 -11.5031 0.6017 23 6 -2.0913 -10.4347 -0.2850 24 6 -1.6686 -9.1066 0.3909 25 6 1.7978 -6.1780 -0.1248 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0002 28 1 2.6845 -3.7145 0.8906 29 1 2.6847 -3.7146 -0.8893 30 1 1.0718 -4.7160 2.1879 31 1 -0.5135 -4.3378 1.4409 32 1 -1.0419 -6.5880 1.1258 33 1 0.1459 -6.8493 2.4334 34 1 1.0172 -9.8338 2.6535 35 1 -0.8017 -10.0129 2.8979 36 1 -1.9912 -11.6858 1.5020 37 1 -1.2650 -12.4292 0.0440 38 1 -1.7178 -10.4835 -1.3078 39 1 -3.1747 -10.5520 -0.2622 40 1 -1.7194 -8.2831 -0.3214 41 1 -2.2994 -8.9012 1.2558 42 1 2.7414 -6.1511 0.4202 43 1 1.9711 -6.4198 -1.1734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752946473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:43 Heat of formation + Delta-G solvation = -23.001797 kcal Electronic energy + Delta-G solvation = -21740.348355 eV Core-core repulsion = 18592.139764 eV Total energy + Delta-G solvation = -3148.208591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68867 -39.89745 -38.46673 -36.45227 -33.94375 -32.62803 -31.88198 -30.40471 -29.37514 -27.19990 -25.19069 -24.00377 -23.66387 -22.24038 -21.45984 -21.18225 -19.59980 -19.12221 -17.95723 -17.44007 -17.01966 -16.55552 -16.03658 -15.60946 -15.32063 -14.98171 -14.90299 -14.65408 -14.21656 -13.99593 -13.94118 -13.88998 -13.78272 -13.02092 -12.97566 -12.78482 -12.74902 -12.23114 -12.12159 -12.05710 -12.02238 -11.88655 -11.79821 -11.69504 -11.62571 -11.37499 -10.93133 -10.74216 -10.64038 -9.72991 -8.99736 -7.95050 -5.23552 1.45859 1.48505 1.49719 1.58124 1.85680 2.54132 2.56684 3.30464 3.39281 3.48787 3.63101 3.63988 3.69327 3.83001 3.92290 4.22496 4.25535 4.28877 4.40096 4.42943 4.49029 4.54593 4.60267 4.64054 4.72463 4.77838 4.80591 4.81247 4.92689 4.96381 5.02149 5.06991 5.14181 5.19811 5.21969 5.26453 5.27914 5.38295 5.45983 5.50426 6.27330 6.46247 7.04999 7.34479 8.08638 8.33482 9.28297 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042528 B = 0.003087 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.232556 B = 9069.249856 C = 9312.895058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.741 5.741 10 C 0.165 3.835 11 C -0.095 4.095 12 H 0.076 0.924 13 C -0.117 4.117 14 C 0.110 3.890 15 N -0.611 5.611 16 C 0.563 3.437 17 O -0.591 6.591 18 C -0.186 4.186 19 C -0.109 4.109 20 C -0.136 4.136 21 H 0.098 0.902 22 C -0.089 4.089 23 C -0.123 4.123 24 C -0.078 4.078 25 C 0.118 3.882 26 H 0.252 0.748 27 H 0.376 0.624 28 H 0.028 0.972 29 H 0.017 0.983 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 -22.776 6.106 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.038 3.962 11 C -0.115 4.115 12 H 0.094 0.906 13 C -0.155 4.155 14 C -0.012 4.012 15 N -0.342 5.342 16 C 0.353 3.647 17 O -0.472 6.472 18 C -0.189 4.189 19 C -0.146 4.146 20 C -0.155 4.155 21 H 0.116 0.884 22 C -0.126 4.126 23 C -0.160 4.160 24 C -0.115 4.115 25 C -0.006 4.006 26 H 0.061 0.939 27 H 0.209 0.791 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.132 -23.006 5.711 24.253 hybrid contribution 0.536 1.374 -0.521 1.564 sum -4.596 -21.632 5.190 22.715 Atomic orbital electron populations 1.69801 1.06472 1.26100 1.59356 1.25528 0.96417 1.00948 1.03611 0.85164 0.77759 0.79612 0.77363 1.21596 1.22009 1.19523 1.19611 0.91485 0.85365 1.41393 0.90834 1.42465 1.05687 1.00828 1.89422 1.20639 0.93338 0.84300 0.97901 1.22339 0.97688 0.92600 0.98861 0.90592 1.22613 1.01631 0.94860 0.96362 1.22185 0.94410 0.91213 0.93386 1.48514 1.36348 1.06358 1.43027 1.19708 0.84410 0.80736 0.79849 1.90657 1.42312 1.74008 1.40265 1.22338 0.95532 0.96701 1.04313 1.23269 1.04316 0.97982 0.89018 1.23569 1.00489 0.89640 1.01808 0.88408 1.21995 0.92236 0.97947 1.00431 1.22699 1.01405 0.93353 0.98554 1.21920 0.90189 0.98330 1.01105 1.22099 0.93212 0.86819 0.98440 0.93941 0.79136 0.95433 0.96484 0.90467 0.89880 0.89706 0.89226 0.88633 0.85099 0.88868 0.90508 0.92916 0.88805 0.92451 0.88127 0.90973 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.18 13.06 21.65 0.28 -57.90 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -36.91 5.55 -343.47 -1.91 -38.81 16 10 C 0.17 6.47 5.71 86.38 0.49 6.96 16 11 C -0.10 -2.99 3.04 -9.40 -0.03 -3.01 16 12 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.12 -3.09 6.37 31.78 0.20 -2.88 16 14 C 0.11 2.32 6.39 86.73 0.55 2.87 16 15 N -0.61 -16.31 3.33 -811.79 -2.70 -19.01 16 16 C 0.56 16.21 7.32 87.66 0.64 16.85 16 17 O -0.59 -22.13 17.21 -3.03 -0.05 -22.18 16 18 C -0.19 -3.72 1.88 -52.09 -0.10 -3.81 16 19 C -0.11 -1.59 9.85 30.65 0.30 -1.29 16 20 C -0.14 -2.40 6.71 -9.90 -0.07 -2.47 16 21 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 22 C -0.09 -1.10 6.61 31.67 0.21 -0.89 16 23 C -0.12 -1.69 6.91 31.89 0.22 -1.47 16 24 C -0.08 -1.23 5.52 31.67 0.17 -1.05 16 25 C 0.12 3.47 6.36 86.86 0.55 4.02 16 26 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 27 H 0.38 19.66 7.67 -92.71 -0.71 18.95 16 28 H 0.03 1.07 7.97 -2.39 -0.02 1.05 16 29 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 2.08 7.91 -2.38 -0.02 2.06 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.08 1.55 7.20 -2.39 -0.02 1.53 16 33 H 0.09 1.53 8.14 -2.38 -0.02 1.52 16 34 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 1.08 7.85 -2.39 -0.02 1.06 16 41 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 43 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 Total: -1.00 -69.67 346.75 2.39 -67.29 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.27 Total: 25.48 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 4.46 Total: -2.67 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -4.32 Total: -115.72 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -69.67 2.39 -67.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752946473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.285 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds