Wall clock time and date at job start Tue Mar 31 2020 00:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.46789 * 65.00069 * 11 10 9 13 13 N 1.46503 * 109.47212 * 305.00581 * 11 10 9 14 14 C 1.34773 * 119.99980 * 154.99163 * 13 11 10 15 15 O 1.21279 * 120.00434 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99703 * 179.97438 * 14 13 11 17 17 C 1.53003 * 109.46899 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.34897 * 304.16775 * 17 16 14 19 19 C 1.51098 * 110.38760 * 66.45350 * 17 16 14 20 20 C 1.30532 * 111.10237 * 135.24659 * 19 17 16 21 21 C 1.51103 * 111.10577 * 0.02562 * 20 19 17 22 22 C 1.54632 * 104.72220 * 343.56309 * 21 20 19 23 23 C 1.52999 * 109.47457 * 185.00151 * 11 10 9 24 24 C 1.53002 * 117.49620 * 248.74692 * 23 11 10 25 25 C 1.53001 * 117.49881 * 180.09061 * 23 11 10 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 29 29 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 30 30 H 0.96999 * 119.99599 * 334.99953 * 13 11 10 31 31 H 1.08997 * 109.47333 * 300.00038 * 16 14 13 32 32 H 1.08993 * 109.47320 * 60.00826 * 16 14 13 33 33 H 1.07996 * 124.45106 * 315.22899 * 19 17 16 34 34 H 1.08001 * 124.44629 * 180.02562 * 20 19 17 35 35 H 1.08999 * 110.38791 * 102.37248 * 21 20 19 36 36 H 1.08997 * 110.38399 * 224.63539 * 21 20 19 37 37 H 1.09001 * 111.03381 * 266.59933 * 22 21 20 38 38 H 1.09004 * 111.03694 * 142.66573 * 22 21 20 39 39 H 1.08999 * 115.54708 * 34.42062 * 23 11 10 40 40 H 1.08992 * 117.50150 * 0.02562 * 24 23 11 41 41 H 1.09004 * 117.49599 * 145.02286 * 24 23 11 42 42 H 1.09002 * 117.50007 * 214.98211 * 25 23 11 43 43 H 1.09003 * 117.49733 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4975 -4.8138 -0.9301 13 7 0.1449 -4.6758 1.1329 14 6 -1.0796 -5.2366 1.0820 15 8 -1.4204 -5.8608 0.0996 16 6 -2.0249 -5.0891 2.2464 17 6 -3.3354 -5.8143 1.9344 18 1 -3.7626 -5.4415 1.0035 19 6 -3.1044 -7.3050 1.8475 20 6 -4.0310 -7.9625 2.4901 21 6 -5.0349 -7.0199 3.1121 22 6 -4.3390 -5.6391 3.0975 23 6 1.8250 -6.1411 0.1269 24 6 1.8340 -7.0695 -1.0892 25 6 1.0024 -7.4311 0.1440 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 0.0005 28 1 2.6849 -3.7145 -0.8894 29 1 2.6848 -3.7144 0.8905 30 1 0.4176 -4.1768 1.9187 31 1 -1.5732 -5.5233 3.1383 32 1 -2.2265 -4.0320 2.4190 33 1 -2.2809 -7.7660 1.3224 34 1 -4.0745 -9.0389 2.5670 35 1 -5.9479 -6.9912 2.5174 36 1 -5.2581 -7.3238 4.1347 37 1 -3.8193 -5.4530 4.0374 38 1 -5.0524 -4.8436 2.8825 39 1 2.7239 -6.1091 0.7426 40 1 1.2983 -6.7388 -1.9789 41 1 2.7389 -7.6487 -1.2734 42 1 1.3604 -8.2480 0.7706 43 1 -0.0808 -7.3383 0.0661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754433573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:26 Heat of formation + Delta-G solvation = 7.646267 kcal Electronic energy + Delta-G solvation = -21925.678357 eV Core-core repulsion = 18778.798766 eV Total energy + Delta-G solvation = -3146.879591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00116 -38.51704 -36.93624 -34.97741 -33.33233 -31.64655 -30.85260 -28.93940 -28.05297 -25.31477 -23.92190 -22.13252 -21.50600 -20.81096 -20.25489 -19.91768 -18.64141 -17.29923 -16.61108 -16.04770 -15.80142 -15.48528 -14.95624 -14.80005 -14.35358 -13.88337 -13.49544 -13.13960 -12.90468 -12.58366 -12.16818 -11.94234 -11.86246 -11.80444 -11.63201 -11.27707 -11.22143 -11.13192 -10.94484 -10.89399 -10.80275 -10.68432 -10.21824 -10.08165 -9.92785 -9.68802 -9.34086 -8.91825 -8.87055 -8.54149 -6.97419 -5.79525 -3.09303 2.33414 3.01814 3.41852 3.46352 3.47439 3.49183 4.17191 4.54829 4.62003 4.63391 4.89381 4.91373 5.10210 5.19507 5.28809 5.30078 5.42806 5.44881 5.52525 5.56240 5.59421 5.68394 5.80212 5.81567 5.85915 5.87803 5.93432 5.98732 6.10368 6.17469 6.24284 6.30206 6.38488 6.51633 6.53233 6.62190 6.71223 6.94566 7.00985 7.66312 7.96405 8.38547 8.64869 9.50297 10.06145 10.41838 11.42795 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.004581 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.243583 B = 6111.162873 C = 7632.386301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.086 0.914 13 N -0.709 5.709 14 C 0.517 3.483 15 O -0.546 6.546 16 C -0.134 4.134 17 C -0.053 4.053 18 H 0.090 0.910 19 C -0.133 4.133 20 C -0.191 4.191 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.162 4.162 24 C -0.172 4.172 25 C -0.185 4.185 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.034 0.966 29 H 0.024 0.976 30 H 0.403 0.597 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 -15.342 6.665 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.104 0.896 13 N -0.359 5.359 14 C 0.304 3.696 15 O -0.425 6.425 16 C -0.174 4.174 17 C -0.071 4.071 18 H 0.108 0.892 19 C -0.150 4.150 20 C -0.209 4.209 21 C -0.134 4.134 22 C -0.160 4.160 23 C -0.181 4.181 24 C -0.210 4.210 25 C -0.222 4.222 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.238 0.762 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.853 -15.626 5.963 17.415 hybrid contribution 0.513 1.173 0.312 1.317 sum -4.340 -14.453 6.275 16.343 Atomic orbital electron populations 1.69658 1.05108 1.25810 1.57416 1.24738 0.95500 0.97677 1.02806 0.86264 0.78520 0.83501 0.77854 1.21685 1.21259 1.21261 1.19177 0.91014 0.84088 1.43176 0.91201 1.42336 1.05992 0.99704 1.89582 1.20910 0.93070 0.85178 0.98842 1.20762 0.90202 0.92539 0.90136 0.89558 1.45997 1.14697 1.54538 1.20641 1.20544 0.82107 0.78275 0.88648 1.90588 1.76165 1.41733 1.34033 1.21710 0.95159 1.03112 0.97448 1.20800 0.93827 0.93388 0.99116 0.89161 1.23353 0.98761 0.95216 0.97719 1.23210 0.97423 0.98879 1.01343 1.21313 0.97930 0.93867 1.00337 1.22559 0.97935 0.97114 0.98434 1.22650 1.01410 0.91565 1.02525 1.22889 1.01998 1.03262 0.92830 1.23267 1.00742 0.97448 1.00743 0.93435 0.77994 0.94840 0.95838 0.76220 0.89177 0.88427 0.85690 0.86357 0.91104 0.91625 0.90939 0.90819 0.88040 0.88792 0.89323 0.90056 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.04 5.43 -59.91 -0.33 -18.36 16 10 C 0.15 2.90 5.80 -4.04 -0.02 2.88 16 11 C 0.17 2.85 2.43 -67.93 -0.17 2.68 16 12 H 0.09 1.68 7.34 -51.93 -0.38 1.29 16 13 N -0.71 -11.14 4.50 -53.80 -0.24 -11.39 16 14 C 0.52 8.03 6.93 -10.99 -0.08 7.95 16 15 O -0.55 -9.76 11.71 5.56 0.07 -9.70 16 16 C -0.13 -1.66 5.12 -27.88 -0.14 -1.81 16 17 C -0.05 -0.65 2.54 -90.72 -0.23 -0.88 16 18 H 0.09 1.27 8.01 -51.93 -0.42 0.85 16 19 C -0.13 -1.63 9.19 -35.70 -0.33 -1.96 16 20 C -0.19 -2.04 10.78 -35.70 -0.38 -2.42 16 21 C -0.10 -0.92 6.81 -26.83 -0.18 -1.11 16 22 C -0.12 -1.23 6.71 -25.02 -0.17 -1.39 16 23 C -0.16 -2.32 5.36 -90.62 -0.49 -2.81 16 24 C -0.17 -2.31 10.18 -26.69 -0.27 -2.58 16 25 C -0.19 -2.55 9.74 -26.69 -0.26 -2.81 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.39 10.13 7.33 -40.82 -0.30 9.83 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.40 6.06 8.60 -40.82 -0.35 5.71 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.13 1.68 7.31 -52.49 -0.38 1.29 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.66 7.91 -51.93 -0.41 0.25 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.37 8.11 -51.93 -0.42 0.94 16 40 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.12 1.85 5.02 -51.93 -0.26 1.59 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -30.45 347.80 -9.64 -40.09 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -7.12 Total: 15.57 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -2.96 Total: -11.50 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.16 Total: -56.81 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.70 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.45 -9.64 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754433573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.740 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds